Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99307 * 2 1 4 4 N 1.34768 * 120.00429 * 180.02562 * 2 1 3 5 5 C 1.47155 * 120.98301 * 4.07867 * 4 2 1 6 6 C 1.53296 * 108.38732 * 230.56156 * 5 4 2 7 7 O 1.42958 * 109.22021 * 307.69548 * 6 5 4 8 8 C 1.42965 * 114.16852 * 62.58127 * 7 6 5 9 9 C 1.47150 * 120.98599 * 184.10452 * 4 2 1 10 10 H 1.08999 * 109.68260 * 249.20604 * 9 4 2 11 11 C 1.50700 * 109.67822 * 9.71671 * 9 4 2 12 12 O 1.21281 * 120.00088 * 57.97818 * 11 9 4 13 13 N 1.34775 * 120.00019 * 237.97091 * 11 9 4 14 14 C 1.47029 * 125.64726 * 4.53023 * 13 11 9 15 15 C 1.54324 * 107.26769 * 178.98306 * 14 13 11 16 16 C 1.55152 * 102.94670 * 337.80330 * 15 14 13 17 17 H 1.08999 * 111.00824 * 277.39267 * 16 15 14 18 18 N 1.46504 * 111.00537 * 153.57235 * 16 15 14 19 19 C 1.46496 * 120.00560 * 301.46059 * 18 16 15 20 20 C 1.36942 * 119.99340 * 121.45183 * 18 16 15 21 21 H 1.08001 * 120.00086 * 37.86680 * 20 18 16 22 22 C 1.38815 * 119.99912 * 217.85765 * 20 18 16 23 23 N 1.31621 * 119.99602 * 25.96032 * 22 20 18 24 24 Si 1.86800 * 119.99878 * 205.95137 * 22 20 18 25 25 H 1.48494 * 109.47191 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46824 * 240.00322 * 24 22 20 27 27 H 1.48502 * 109.46677 * 120.00402 * 24 22 20 28 28 C 1.47422 * 125.65067 * 184.57652 * 13 11 9 29 29 H 1.09000 * 109.47464 * 269.99405 * 1 2 3 30 30 H 1.09005 * 109.47629 * 30.00208 * 1 2 3 31 31 H 1.09008 * 109.47049 * 149.99678 * 1 2 3 32 32 H 1.09008 * 109.68229 * 350.28196 * 5 4 2 33 33 H 1.09003 * 109.68390 * 110.79611 * 5 4 2 34 34 H 1.09002 * 109.51248 * 67.61753 * 6 5 4 35 35 H 1.09001 * 109.51343 * 187.72295 * 6 5 4 36 36 H 1.09003 * 109.51595 * 177.49644 * 8 7 6 37 37 H 1.09005 * 109.51050 * 57.34060 * 8 7 6 38 38 H 1.08996 * 109.88355 * 59.56617 * 14 13 11 39 39 H 1.09000 * 109.87858 * 298.39574 * 14 13 11 40 40 H 1.09005 * 110.71774 * 219.43985 * 15 14 13 41 41 H 1.09004 * 110.72037 * 96.16860 * 15 14 13 42 42 H 1.08997 * 109.46893 * 273.38583 * 19 18 16 43 43 H 1.09002 * 109.47133 * 33.38189 * 19 18 16 44 44 H 1.08995 * 109.47105 * 153.38445 * 19 18 16 45 45 H 0.96994 * 120.00272 * 5.23464 * 23 22 20 46 46 H 1.09007 * 110.36809 * 85.24604 * 28 13 11 47 47 H 1.09004 * 110.37000 * 322.92739 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4700 -2.4523 -0.0908 6 6 1.9743 -3.3639 1.0337 7 8 3.4018 -3.4235 0.9869 8 6 4.0476 -2.1668 1.2055 9 6 3.6494 -1.1939 0.0898 10 1 4.0694 -1.5299 -0.8583 11 6 4.1633 0.1856 0.4119 12 8 3.7910 0.7519 1.4177 13 7 5.0369 0.7900 -0.4176 14 6 5.4970 0.2617 -1.7102 15 6 6.4650 1.3021 -2.3119 16 6 6.0588 2.6136 -1.5892 17 1 5.1980 3.0756 -2.0725 18 7 7.1853 3.5481 -1.5243 19 6 8.4307 3.1494 -0.8640 20 6 7.0740 4.7942 -2.0811 21 1 6.1413 5.3345 -2.0136 22 6 8.1601 5.3630 -2.7322 23 7 9.0841 4.5929 -3.2666 24 14 8.3099 7.2212 -2.8501 25 1 7.1500 7.8553 -2.1737 26 1 8.3325 7.6263 -4.2786 27 1 9.5667 7.6592 -2.1914 28 6 5.6899 2.0899 -0.1787 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 0.3984 -2.2879 0.0226 33 1 1.6700 -2.9154 -1.0571 34 1 1.6580 -2.9631 1.9968 35 1 1.5629 -4.3649 0.9031 36 1 5.1286 -2.3067 1.1980 37 1 3.7388 -1.7617 2.1692 38 1 4.6462 0.1184 -2.3762 39 1 6.0166 -0.6847 -1.5600 40 1 6.3144 1.3921 -3.3877 41 1 7.4994 1.0421 -2.0866 42 1 8.3606 3.3622 0.2027 43 1 8.5946 2.0819 -1.0114 44 1 9.2636 3.7073 -1.2919 45 1 8.9689 3.6298 -3.2725 46 1 6.5886 1.9580 0.4240 47 1 5.0002 2.7765 0.3124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980441345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -61.368088 kcal Electronic energy + Delta-G solvation = -29585.900643 eV Core-core repulsion = 25577.700450 eV Total energy + Delta-G solvation = -4008.200192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16780 -39.13267 -38.51802 -37.21204 -35.09133 -34.94997 -32.49887 -31.44627 -30.13353 -29.70313 -28.24160 -27.58959 -26.09126 -25.07560 -23.34264 -22.50747 -22.17707 -20.34820 -19.35624 -18.68202 -17.61218 -17.36990 -17.19002 -16.87430 -16.14135 -15.78868 -15.52870 -15.46182 -15.09830 -14.39242 -14.19579 -13.96892 -13.81271 -13.77141 -13.50100 -13.29173 -13.08914 -12.68816 -12.65295 -12.48412 -12.27089 -12.10071 -11.93574 -11.81454 -11.39819 -11.20101 -10.88882 -10.84916 -10.64188 -10.59443 -10.53767 -10.11095 -10.03298 -9.73673 -9.48048 -9.36693 -8.92246 -8.39938 -8.20350 -6.82739 -6.06070 -3.40852 2.26369 2.48012 3.06757 3.14164 3.47003 3.51591 3.53573 3.68919 4.21202 4.28887 4.49035 4.56368 4.60519 4.66348 4.68243 4.75724 4.92505 4.99145 5.03735 5.13105 5.21599 5.28131 5.30492 5.31277 5.42925 5.48531 5.53871 5.59516 5.77002 5.90301 5.98207 6.04592 6.30725 6.35952 6.54126 6.58757 6.63031 6.67527 6.87533 6.91145 7.03126 7.20492 7.87224 7.97143 8.11443 8.50843 8.57133 9.09684 9.78716 10.23843 11.13319 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.003058 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.112949 B = 9154.003014 C = 9708.346063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.503 3.497 3 O -0.495 6.495 4 N -0.613 5.613 5 C 0.074 3.926 6 C 0.043 3.957 7 O -0.373 6.373 8 C 0.064 3.936 9 C 0.094 3.906 10 H 0.096 0.904 11 C 0.550 3.450 12 O -0.529 6.529 13 N -0.608 5.608 14 C 0.103 3.897 15 C -0.153 4.153 16 C 0.171 3.829 17 H 0.078 0.922 18 N -0.584 5.584 19 C 0.112 3.888 20 C -0.357 4.357 21 H 0.053 0.947 22 C -0.016 4.016 23 N -0.904 5.904 24 Si 1.070 2.930 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.098 3.902 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.002 0.998 43 H 0.021 0.979 44 H 0.069 0.931 45 H 0.270 0.730 46 H 0.062 0.938 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 -19.487 5.377 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.291 3.709 3 O -0.368 6.368 4 N -0.352 5.352 5 C -0.049 4.049 6 C -0.034 4.034 7 O -0.291 6.291 8 C -0.014 4.014 9 C -0.013 4.013 10 H 0.114 0.886 11 C 0.338 3.662 12 O -0.405 6.405 13 N -0.343 5.343 14 C -0.021 4.021 15 C -0.193 4.193 16 C 0.061 3.939 17 H 0.096 0.904 18 N -0.305 5.305 19 C -0.033 4.033 20 C -0.486 4.486 21 H 0.071 0.929 22 C -0.220 4.220 23 N -0.542 5.542 24 Si 0.899 3.101 25 H -0.216 1.216 26 H -0.220 1.220 27 H -0.215 1.215 28 C -0.026 4.026 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.020 0.980 43 H 0.040 0.960 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.624 -17.494 5.418 23.436 hybrid contribution -1.222 -1.294 0.362 1.816 sum -15.846 -18.788 5.780 25.248 Atomic orbital electron populations 1.21929 0.91267 1.04811 1.04823 1.20938 0.90799 0.83021 0.76096 1.90880 1.68702 1.30494 1.46693 1.48093 1.04979 1.06571 1.75584 1.22547 0.98022 0.83878 1.00475 1.23038 0.81823 1.00779 0.97777 1.87995 1.18559 1.29647 1.92867 1.22839 0.98724 0.83242 0.96645 1.21881 0.82014 0.95893 1.01521 0.88647 1.19080 0.77921 0.85753 0.83488 1.90677 1.56712 1.64967 1.28145 1.48232 1.44016 1.22051 1.19993 1.22032 0.97681 0.97560 0.84793 1.23210 0.98758 0.96588 1.00724 1.21601 0.92479 0.88840 0.90949 0.90365 1.43752 1.10578 1.12686 1.63489 1.21126 0.90915 0.96876 0.94346 1.19935 1.01974 0.92310 1.34421 0.92943 1.26007 0.95807 1.06562 0.93631 1.70722 1.38210 1.06777 1.38506 0.83473 0.75654 0.74887 0.76049 1.21615 1.22017 1.21550 1.22773 0.96320 0.83159 1.00388 0.88776 0.88676 0.90067 0.88017 0.90128 0.92247 0.87268 0.87104 0.91163 0.92308 0.92273 0.90621 0.90689 0.97993 0.96038 0.91240 0.91935 0.91953 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.56 36.01 0.34 -1.01 16 2 C 0.50 6.76 7.49 -10.99 -0.08 6.67 16 3 O -0.50 -9.50 12.95 -19.10 -0.25 -9.75 16 4 N -0.61 -6.91 3.02 -166.05 -0.50 -7.41 16 5 C 0.07 0.47 6.45 -3.53 -0.02 0.45 16 6 C 0.04 0.28 6.99 37.31 0.26 0.54 16 7 O -0.37 -3.61 10.74 -35.23 -0.38 -3.99 16 8 C 0.06 0.70 6.26 37.31 0.23 0.93 16 9 C 0.09 1.21 3.32 -68.58 -0.23 0.98 16 10 H 0.10 1.11 6.63 -51.93 -0.34 0.77 16 11 C 0.55 9.65 4.49 -10.99 -0.05 9.60 16 12 O -0.53 -11.25 14.82 -19.10 -0.28 -11.53 16 13 N -0.61 -10.84 3.33 -170.51 -0.57 -11.40 16 14 C 0.10 1.55 5.82 -3.06 -0.02 1.53 16 15 C -0.15 -2.74 6.52 -24.90 -0.16 -2.90 16 16 C 0.17 3.71 3.55 -65.78 -0.23 3.47 16 17 H 0.08 1.82 7.96 -51.93 -0.41 1.41 16 18 N -0.58 -14.73 2.63 -171.03 -0.45 -15.18 16 19 C 0.11 2.66 8.56 59.84 0.51 3.17 16 20 C -0.36 -10.07 9.33 -15.06 -0.14 -10.21 16 21 H 0.05 1.52 7.95 -52.49 -0.42 1.10 16 22 C -0.02 -0.46 4.78 -17.43 -0.08 -0.55 16 23 N -0.90 -26.64 12.29 55.49 0.68 -25.95 16 24 Si 1.07 25.44 29.99 -169.99 -5.10 20.35 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.10 2.00 6.49 -2.53 -0.02 1.99 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.38 6.09 -51.92 -0.32 0.07 16 32 H 0.10 0.37 5.55 -51.92 -0.29 0.08 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.86 7.94 -51.93 -0.41 0.44 16 38 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.06 0.74 7.98 -51.93 -0.41 0.32 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.07 1.37 6.28 -51.93 -0.33 1.05 16 42 H 0.00 0.04 7.97 -51.93 -0.41 -0.37 16 43 H 0.02 0.45 6.30 -51.93 -0.33 0.12 16 44 H 0.07 1.82 5.65 -51.93 -0.29 1.53 16 45 H 0.27 7.96 7.28 -40.82 -0.30 7.66 16 46 H 0.06 1.29 6.97 -51.93 -0.36 0.93 16 47 H 0.07 1.66 8.00 -51.93 -0.42 1.24 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -36.66 364.36 -8.25 -44.91 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.22 Total: -0.20 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 0.31 Total: 14.67 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.84 Total: -59.95 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.91 Total: -25.27 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.66 -8.25 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.455 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds