Wall clock time and date at job start Fri Apr 10 2020 18:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99307 * 2 1 4 4 N 1.34768 * 120.00429 * 180.02562 * 2 1 3 5 5 C 1.47155 * 120.98301 * 4.07867 * 4 2 1 6 6 C 1.53296 * 108.38732 * 230.56156 * 5 4 2 7 7 O 1.42958 * 109.22021 * 307.69548 * 6 5 4 8 8 C 1.42965 * 114.16852 * 62.58127 * 7 6 5 9 9 C 1.47150 * 120.98599 * 184.10452 * 4 2 1 10 10 H 1.08999 * 109.68260 * 249.20604 * 9 4 2 11 11 C 1.50700 * 109.67822 * 9.71671 * 9 4 2 12 12 O 1.21281 * 120.00088 * 57.97818 * 11 9 4 13 13 N 1.34775 * 120.00019 * 237.97091 * 11 9 4 14 14 C 1.47029 * 125.64726 * 4.53023 * 13 11 9 15 15 C 1.54324 * 107.26769 * 178.98306 * 14 13 11 16 16 C 1.55152 * 102.94670 * 337.80330 * 15 14 13 17 17 H 1.08999 * 111.00824 * 277.39267 * 16 15 14 18 18 N 1.46504 * 111.00537 * 153.57235 * 16 15 14 19 19 C 1.46496 * 120.00560 * 301.46059 * 18 16 15 20 20 C 1.36942 * 119.99340 * 121.45183 * 18 16 15 21 21 H 1.08001 * 120.00086 * 37.86680 * 20 18 16 22 22 C 1.38815 * 119.99912 * 217.85765 * 20 18 16 23 23 N 1.31621 * 119.99602 * 25.96032 * 22 20 18 24 24 Si 1.86800 * 119.99878 * 205.95137 * 22 20 18 25 25 H 1.48494 * 109.47191 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46824 * 240.00322 * 24 22 20 27 27 H 1.48502 * 109.46677 * 120.00402 * 24 22 20 28 28 C 1.47422 * 125.65067 * 184.57652 * 13 11 9 29 29 H 1.09000 * 109.47464 * 269.99405 * 1 2 3 30 30 H 1.09005 * 109.47629 * 30.00208 * 1 2 3 31 31 H 1.09008 * 109.47049 * 149.99678 * 1 2 3 32 32 H 1.09008 * 109.68229 * 350.28196 * 5 4 2 33 33 H 1.09003 * 109.68390 * 110.79611 * 5 4 2 34 34 H 1.09002 * 109.51248 * 67.61753 * 6 5 4 35 35 H 1.09001 * 109.51343 * 187.72295 * 6 5 4 36 36 H 1.09003 * 109.51595 * 177.49644 * 8 7 6 37 37 H 1.09005 * 109.51050 * 57.34060 * 8 7 6 38 38 H 1.08996 * 109.88355 * 59.56617 * 14 13 11 39 39 H 1.09000 * 109.87858 * 298.39574 * 14 13 11 40 40 H 1.09005 * 110.71774 * 219.43985 * 15 14 13 41 41 H 1.09004 * 110.72037 * 96.16860 * 15 14 13 42 42 H 1.08997 * 109.46893 * 273.38583 * 19 18 16 43 43 H 1.09002 * 109.47133 * 33.38189 * 19 18 16 44 44 H 1.08995 * 109.47105 * 153.38445 * 19 18 16 45 45 H 0.96994 * 120.00272 * 5.23464 * 23 22 20 46 46 H 1.09007 * 110.36809 * 85.24604 * 28 13 11 47 47 H 1.09004 * 110.37000 * 322.92739 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4700 -2.4523 -0.0908 6 6 1.9743 -3.3639 1.0337 7 8 3.4018 -3.4235 0.9869 8 6 4.0476 -2.1668 1.2055 9 6 3.6494 -1.1939 0.0898 10 1 4.0694 -1.5299 -0.8583 11 6 4.1633 0.1856 0.4119 12 8 3.7910 0.7519 1.4177 13 7 5.0369 0.7900 -0.4176 14 6 5.4970 0.2617 -1.7102 15 6 6.4650 1.3021 -2.3119 16 6 6.0588 2.6136 -1.5892 17 1 5.1980 3.0756 -2.0725 18 7 7.1853 3.5481 -1.5243 19 6 8.4307 3.1494 -0.8640 20 6 7.0740 4.7942 -2.0811 21 1 6.1413 5.3345 -2.0136 22 6 8.1601 5.3630 -2.7322 23 7 9.0841 4.5929 -3.2666 24 14 8.3099 7.2212 -2.8501 25 1 7.1500 7.8553 -2.1737 26 1 8.3325 7.6263 -4.2786 27 1 9.5667 7.6592 -2.1914 28 6 5.6899 2.0899 -0.1787 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 0.3984 -2.2879 0.0226 33 1 1.6700 -2.9154 -1.0571 34 1 1.6580 -2.9631 1.9968 35 1 1.5629 -4.3649 0.9031 36 1 5.1286 -2.3067 1.1980 37 1 3.7388 -1.7617 2.1692 38 1 4.6462 0.1184 -2.3762 39 1 6.0166 -0.6847 -1.5600 40 1 6.3144 1.3921 -3.3877 41 1 7.4994 1.0421 -2.0866 42 1 8.3606 3.3622 0.2027 43 1 8.5946 2.0819 -1.0114 44 1 9.2636 3.7073 -1.2919 45 1 8.9689 3.6298 -3.2725 46 1 6.5886 1.9580 0.4240 47 1 5.0002 2.7765 0.3124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980441345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:06 Heat of formation + Delta-G solvation = -87.556695 kcal Electronic energy + Delta-G solvation = -29587.036266 eV Core-core repulsion = 25577.700450 eV Total energy + Delta-G solvation = -4009.335815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20651 -40.47760 -39.39831 -38.76757 -36.80009 -35.97488 -33.76562 -32.99574 -31.31036 -30.83079 -29.65312 -28.56508 -28.09147 -26.17692 -24.77752 -23.83521 -23.31923 -21.49792 -21.07074 -19.78027 -19.51198 -18.69777 -18.11553 -17.88499 -17.30516 -16.81215 -16.57675 -16.47847 -16.04338 -15.96173 -15.69140 -15.35350 -15.27387 -15.01026 -14.82640 -14.76911 -14.52496 -14.09765 -13.80055 -13.65203 -13.27530 -13.13198 -13.00304 -12.90418 -12.87310 -12.68679 -12.49086 -12.42963 -12.29997 -12.05223 -11.92279 -11.78995 -11.42668 -11.39169 -10.96025 -10.66687 -10.50306 -9.83243 -9.64221 -8.93425 -8.24136 -5.61380 1.26510 1.51346 1.56871 1.63563 1.81107 1.83632 2.01997 2.59584 2.71715 3.13658 3.24985 3.40017 3.47634 3.70406 3.74037 3.76988 3.91583 3.95199 4.03228 4.08714 4.18551 4.19115 4.30639 4.34233 4.42387 4.49871 4.53744 4.57591 4.58902 4.69190 4.73782 4.85332 4.87289 4.88090 4.99470 5.07969 5.10516 5.15081 5.21637 5.30106 5.86724 5.92739 6.19238 6.36015 6.50758 6.98571 7.02989 7.20843 7.67079 8.11772 8.89618 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.003058 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.112949 B = 9154.003014 C = 9708.346063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.489 3.511 3 O -0.566 6.566 4 N -0.612 5.612 5 C 0.069 3.931 6 C 0.036 3.964 7 O -0.378 6.378 8 C 0.073 3.927 9 C 0.098 3.902 10 H 0.115 0.885 11 C 0.546 3.454 12 O -0.575 6.575 13 N -0.614 5.614 14 C 0.111 3.889 15 C -0.139 4.139 16 C 0.166 3.834 17 H 0.052 0.948 18 N -0.600 5.600 19 C 0.122 3.878 20 C -0.373 4.373 21 H 0.033 0.967 22 C -0.056 4.056 23 N -0.920 5.920 24 Si 1.116 2.884 25 H -0.282 1.282 26 H -0.284 1.284 27 H -0.282 1.282 28 C 0.113 3.887 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.004 0.996 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.260 0.740 46 H 0.060 0.940 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 -22.609 4.768 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.280 3.720 3 O -0.444 6.444 4 N -0.350 5.350 5 C -0.051 4.051 6 C -0.041 4.041 7 O -0.295 6.295 8 C -0.005 4.005 9 C -0.009 4.009 10 H 0.133 0.867 11 C 0.336 3.664 12 O -0.454 6.454 13 N -0.348 5.348 14 C -0.012 4.012 15 C -0.179 4.179 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.322 5.322 19 C -0.023 4.023 20 C -0.502 4.502 21 H 0.051 0.949 22 C -0.256 4.256 23 N -0.559 5.559 24 Si 0.940 3.060 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.208 1.208 28 C -0.012 4.012 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.163 0.837 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.058 -20.724 4.796 26.653 hybrid contribution -0.901 -0.402 0.607 1.159 sum -16.960 -21.127 5.404 27.626 Atomic orbital electron populations 1.21955 0.87125 1.06551 1.06180 1.21963 0.92917 0.82518 0.74637 1.90852 1.70314 1.33081 1.50201 1.48335 1.04413 1.07982 1.74238 1.22956 0.99413 0.81351 1.01407 1.23360 0.80145 1.02842 0.97730 1.88001 1.20472 1.28347 1.92727 1.22690 0.99587 0.83396 0.94868 1.21863 0.83417 0.92655 1.03002 0.86745 1.19926 0.76752 0.87224 0.82469 1.90639 1.57915 1.66618 1.30199 1.48324 1.44324 1.20963 1.21214 1.22133 0.97776 0.97860 0.83403 1.23026 0.99537 0.94829 1.00526 1.21547 0.90658 0.89989 0.92067 0.92997 1.43854 1.11708 1.12802 1.63882 1.21021 0.89419 0.97945 0.93943 1.20025 1.01596 0.93921 1.34669 0.94927 1.27249 0.95333 1.09938 0.93039 1.70824 1.38786 1.06396 1.39925 0.82853 0.76077 0.70489 0.76540 1.20742 1.21063 1.20783 1.22332 0.95441 0.84386 0.99082 0.87409 0.89387 0.85891 0.84728 0.88237 0.92594 0.83680 0.86041 0.93105 0.90841 0.88187 0.90395 0.90544 0.97775 0.93510 0.93734 0.92973 0.92167 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.56 71.24 0.68 -1.49 16 2 C 0.49 12.71 7.49 87.66 0.66 13.36 16 3 O -0.57 -22.54 12.95 20.53 0.27 -22.28 16 4 N -0.61 -12.39 3.02 -797.66 -2.41 -14.80 16 5 C 0.07 0.58 6.45 86.35 0.56 1.14 16 6 C 0.04 0.32 6.99 72.08 0.50 0.82 16 7 O -0.38 -6.08 10.74 -148.98 -1.60 -7.68 16 8 C 0.07 1.47 6.26 72.08 0.45 1.92 16 9 C 0.10 2.34 3.32 44.22 0.15 2.49 16 10 H 0.11 2.28 6.63 -2.39 -0.02 2.27 16 11 C 0.55 19.34 4.49 87.66 0.39 19.73 16 12 O -0.57 -25.59 14.82 20.54 0.30 -25.28 16 13 N -0.61 -21.99 3.33 -811.77 -2.70 -24.69 16 14 C 0.11 3.12 5.82 86.73 0.51 3.63 16 15 C -0.14 -4.91 6.52 31.78 0.21 -4.70 16 16 C 0.17 7.47 3.55 46.38 0.16 7.63 16 17 H 0.05 2.57 7.96 -2.39 -0.02 2.55 16 18 N -0.60 -31.29 2.63 -695.02 -1.83 -33.12 16 19 C 0.12 5.86 8.56 127.77 1.09 6.95 16 20 C -0.37 -21.74 9.33 84.03 0.78 -20.96 16 21 H 0.03 2.00 7.95 -2.91 -0.02 1.97 16 22 C -0.06 -3.23 4.78 84.86 0.41 -2.82 16 23 N -0.92 -54.93 12.29 21.65 0.27 -54.66 16 24 Si 1.12 51.94 29.99 68.60 2.06 54.00 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 C 0.11 4.85 6.49 86.86 0.56 5.41 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.12 0.58 6.09 -2.38 -0.01 0.56 16 32 H 0.13 0.24 5.55 -2.38 -0.01 0.22 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.22 7.94 -2.38 -0.02 1.20 16 38 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 39 H 0.10 2.10 7.98 -2.39 -0.02 2.08 16 40 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 41 H 0.08 2.69 6.28 -2.39 -0.01 2.67 16 42 H 0.00 0.19 7.97 -2.39 -0.02 0.17 16 43 H 0.05 1.97 6.30 -2.39 -0.02 1.95 16 44 H 0.04 2.38 5.65 -2.39 -0.01 2.36 16 45 H 0.26 15.62 7.28 -92.71 -0.68 14.95 16 46 H 0.06 2.58 6.97 -2.38 -0.02 2.56 16 47 H 0.03 1.74 8.00 -2.38 -0.02 1.72 16 Total: -1.00 -86.07 364.36 2.54 -83.54 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.07 Total: 11.86 kcal Atomic # 6 Polarization: 26.00 SS G_CDS: 7.11 Total: 33.11 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -6.67 Total: -127.26 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -1.03 Total: -55.24 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.06 Total: 54.00 kcal Total: -86.07 2.54 -83.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.022 kcal (2) G-P(sol) polarization free energy of solvation -86.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds