Wall clock time and date at job start Fri Apr 10 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00200 * 2 1 4 4 N 1.34771 * 119.99844 * 179.72329 * 2 1 3 5 5 C 1.47156 * 120.98255 * 354.04423 * 4 2 1 6 6 C 1.53718 * 108.16034 * 129.43275 * 5 4 2 7 7 O 1.42957 * 109.14719 * 52.53879 * 6 5 4 8 8 C 1.42966 * 114.16907 * 297.28731 * 7 6 5 9 9 C 1.47151 * 120.98437 * 174.32496 * 4 2 1 10 10 H 1.09003 * 109.68014 * 110.78647 * 9 4 2 11 11 C 1.50700 * 109.67985 * 350.27686 * 9 4 2 12 12 O 1.21281 * 119.99997 * 302.48782 * 11 9 4 13 13 N 1.34782 * 120.00261 * 122.48683 * 11 9 4 14 14 C 1.47028 * 125.64475 * 4.76271 * 13 11 9 15 15 C 1.54333 * 107.26364 * 178.85182 * 14 13 11 16 16 C 1.55161 * 103.02106 * 338.13855 * 15 14 13 17 17 H 1.09007 * 111.00225 * 277.23736 * 16 15 14 18 18 N 1.46494 * 111.03931 * 153.40087 * 16 15 14 19 19 C 1.46506 * 119.99651 * 307.77897 * 18 16 15 20 20 C 1.36941 * 120.00362 * 127.78659 * 18 16 15 21 21 H 1.07995 * 119.99586 * 24.01888 * 20 18 16 22 22 C 1.38809 * 119.99909 * 204.02270 * 20 18 16 23 23 N 1.31619 * 120.00253 * 11.11762 * 22 20 18 24 24 Si 1.86794 * 119.99868 * 191.11513 * 22 20 18 25 25 H 1.48496 * 109.47573 * 90.00302 * 24 22 20 26 26 H 1.48500 * 109.47141 * 210.00140 * 24 22 20 27 27 H 1.48496 * 109.47295 * 329.99866 * 24 22 20 28 28 C 1.47418 * 125.65018 * 185.06951 * 13 11 9 29 29 H 1.09003 * 109.47017 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46951 * 120.00132 * 1 2 3 31 31 H 1.08995 * 109.47179 * 240.00522 * 1 2 3 32 32 H 1.08994 * 109.68330 * 249.21175 * 5 4 2 33 33 H 1.09000 * 109.68159 * 9.76837 * 5 4 2 34 34 H 1.09008 * 109.65572 * 292.57356 * 6 5 4 35 35 H 1.08999 * 109.48493 * 172.40104 * 6 5 4 36 36 H 1.09003 * 109.51136 * 302.65810 * 8 7 6 37 37 H 1.09003 * 109.51388 * 182.50410 * 8 7 6 38 38 H 1.09004 * 109.87841 * 298.38943 * 14 13 11 39 39 H 1.08996 * 109.88448 * 59.55608 * 14 13 11 40 40 H 1.09002 * 110.85005 * 219.67654 * 15 14 13 41 41 H 1.08996 * 110.51804 * 96.44780 * 15 14 13 42 42 H 1.09005 * 109.46668 * 86.67922 * 19 18 16 43 43 H 1.08994 * 109.46916 * 206.67663 * 19 18 16 44 44 H 1.08997 * 109.47098 * 326.68286 * 19 18 16 45 45 H 0.96993 * 120.00180 * 179.97438 * 23 22 20 46 46 H 1.09006 * 110.36733 * 322.92815 * 28 13 11 47 47 H 1.08995 * 110.36885 * 85.25016 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 1.4729 -2.4499 0.1427 6 6 1.9501 -3.3831 -0.9817 7 8 3.3783 -3.4421 -0.9676 8 6 4.0185 -2.1900 -1.2252 9 6 3.6468 -1.1962 -0.1190 10 1 4.0892 -1.5150 0.8249 11 6 4.1529 0.1771 -0.4783 12 8 3.7503 0.7286 -1.4807 13 7 5.0528 0.7924 0.3142 14 6 5.6960 0.2037 1.4980 15 6 6.6667 1.2611 2.0652 16 6 6.9299 2.1838 0.8459 17 1 7.7028 1.7669 0.2001 18 7 7.2847 3.5379 1.2780 19 6 6.4244 4.2542 2.2230 20 6 8.4205 4.1341 0.7985 21 1 8.8397 3.8169 -0.1448 22 6 9.0328 5.1460 1.5251 23 7 8.6595 5.3849 2.7644 24 14 10.3867 6.1688 0.7440 25 1 9.7894 7.3514 0.0733 26 1 11.3338 6.6213 1.7944 27 1 11.1133 5.3467 -0.2567 28 6 5.5503 2.1693 0.1414 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3633 -0.5137 0.8900 32 1 1.7001 -2.8928 1.1124 33 1 0.3986 -2.2875 0.0554 34 1 1.6110 -3.0004 -1.9445 35 1 1.5428 -4.3816 -0.8230 36 1 3.6870 -1.8031 -2.1888 37 1 5.0994 -2.3301 -1.2407 38 1 4.9415 -0.0474 2.2435 39 1 6.2502 -0.6904 1.2127 40 1 7.5925 0.7959 2.4037 41 1 6.1949 1.8174 2.8751 42 1 6.7097 3.9948 3.2426 43 1 6.5384 5.3282 2.0759 44 1 5.3851 3.9725 2.0537 45 1 9.0876 6.0917 3.2722 46 1 5.6627 2.4020 -0.9176 47 1 4.8740 2.8796 0.6170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980441350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:10 Heat of formation + Delta-G solvation = -58.952079 kcal Electronic energy + Delta-G solvation = -29515.709077 eV Core-core repulsion = 25507.613650 eV Total energy + Delta-G solvation = -4008.095426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12133 -39.06874 -38.49084 -37.11985 -35.04835 -34.72455 -32.42717 -31.40736 -30.11810 -29.65039 -28.20918 -27.53148 -26.00448 -25.09820 -23.39270 -22.48013 -22.24753 -20.31093 -19.21861 -18.61518 -17.50118 -17.16212 -16.91912 -16.82217 -16.05254 -15.78939 -15.63287 -15.29272 -15.06322 -14.54349 -14.36584 -13.89274 -13.80983 -13.64573 -13.28975 -13.15203 -12.72385 -12.63711 -12.46841 -12.40363 -12.30924 -12.09976 -11.80693 -11.78010 -11.38853 -11.26187 -10.89951 -10.77115 -10.61194 -10.41711 -10.38093 -10.19602 -9.88534 -9.80230 -9.73133 -9.40390 -8.88865 -8.52901 -8.14851 -6.74893 -5.75031 -3.21071 2.29181 2.50402 3.11731 3.17902 3.39663 3.45797 3.46848 3.52035 4.24727 4.30526 4.49039 4.54136 4.63728 4.70133 4.73715 4.79971 4.92950 5.05640 5.08701 5.11217 5.23766 5.32879 5.33107 5.40699 5.46969 5.56188 5.56970 5.66707 5.86689 5.96501 6.02318 6.10829 6.42989 6.49985 6.62205 6.64704 6.74688 6.90211 6.96370 7.05815 7.40660 7.70835 7.81610 7.93091 7.99674 8.40083 8.55921 9.22600 9.84520 10.34283 11.31260 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.002980 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.123916 B = 9393.674380 C = 9778.197582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.504 3.496 3 O -0.496 6.496 4 N -0.614 5.614 5 C 0.077 3.923 6 C 0.043 3.957 7 O -0.373 6.373 8 C 0.063 3.937 9 C 0.094 3.906 10 H 0.096 0.904 11 C 0.550 3.450 12 O -0.530 6.530 13 N -0.608 5.608 14 C 0.102 3.898 15 C -0.149 4.149 16 C 0.173 3.827 17 H 0.077 0.923 18 N -0.585 5.585 19 C 0.160 3.840 20 C -0.258 4.258 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.906 5.906 24 Si 0.908 3.092 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.095 3.905 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.020 0.980 43 H 0.058 0.942 44 H -0.002 1.002 45 H 0.253 0.747 46 H 0.069 0.931 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 -20.221 -3.032 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.292 3.708 3 O -0.368 6.368 4 N -0.353 5.353 5 C -0.046 4.046 6 C -0.034 4.034 7 O -0.291 6.291 8 C -0.015 4.015 9 C -0.013 4.013 10 H 0.113 0.887 11 C 0.337 3.663 12 O -0.407 6.407 13 N -0.342 5.342 14 C -0.022 4.022 15 C -0.189 4.189 16 C 0.062 3.938 17 H 0.095 0.905 18 N -0.305 5.305 19 C 0.016 3.984 20 C -0.388 4.388 21 H 0.087 0.913 22 C -0.194 4.194 23 N -0.551 5.551 24 Si 0.738 3.262 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.030 4.030 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.016 0.984 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.127 -19.339 -3.455 25.417 hybrid contribution 0.460 0.665 -0.067 0.812 sum -15.666 -18.674 -3.522 24.628 Atomic orbital electron populations 1.21894 0.91282 1.05703 1.03761 1.20925 0.90780 0.82985 0.76094 1.90863 1.68846 1.30544 1.46567 1.48069 1.05278 1.06685 1.75270 1.22559 0.97936 0.83836 1.00283 1.23113 0.81901 1.00610 0.97813 1.87993 1.18566 1.30156 1.92376 1.22856 0.98961 0.83158 0.96534 1.21870 0.82095 0.95927 1.01395 0.88651 1.19078 0.78279 0.85606 0.83321 1.90673 1.57047 1.65873 1.27093 1.48225 1.42208 1.15891 1.27926 1.22055 0.95587 0.97270 0.87283 1.23164 0.98154 0.96845 1.00744 1.21433 0.92925 0.86463 0.92995 0.90454 1.43797 1.24947 1.10056 1.51706 1.20792 0.88310 0.97105 0.92192 1.19255 1.02088 1.16012 1.01420 0.91272 1.25047 0.98440 1.00808 0.95153 1.70066 1.44030 1.33014 1.07989 0.86206 0.81393 0.80458 0.78175 1.21426 1.21735 1.20425 1.22898 0.97330 0.81190 1.01553 0.88771 0.89484 0.89508 0.90115 0.88278 0.92233 0.87345 0.91182 0.87034 0.92581 0.92020 0.90507 0.90594 0.96158 0.92374 0.98403 0.93675 0.91231 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.69 36.01 0.31 -1.02 16 2 C 0.50 6.74 7.44 -10.99 -0.08 6.66 16 3 O -0.50 -9.46 13.02 -19.01 -0.25 -9.71 16 4 N -0.61 -6.88 3.01 -165.80 -0.50 -7.38 16 5 C 0.08 0.49 6.58 -3.31 -0.02 0.47 16 6 C 0.04 0.28 7.00 37.53 0.26 0.54 16 7 O -0.37 -3.58 10.74 -35.23 -0.38 -3.96 16 8 C 0.06 0.68 6.26 37.31 0.23 0.92 16 9 C 0.09 1.20 3.31 -68.58 -0.23 0.97 16 10 H 0.10 1.10 6.62 -51.93 -0.34 0.75 16 11 C 0.55 9.59 4.48 -10.98 -0.05 9.54 16 12 O -0.53 -11.25 14.86 -19.01 -0.28 -11.53 16 13 N -0.61 -10.73 3.33 -170.51 -0.57 -11.30 16 14 C 0.10 1.49 5.86 -3.06 -0.02 1.47 16 15 C -0.15 -2.62 6.50 -24.89 -0.16 -2.78 16 16 C 0.17 3.61 3.55 -65.78 -0.23 3.37 16 17 H 0.08 1.61 7.96 -51.93 -0.41 1.20 16 18 N -0.58 -14.79 2.96 -171.03 -0.51 -15.29 16 19 C 0.16 4.03 7.70 59.85 0.46 4.49 16 20 C -0.26 -7.13 9.60 -15.06 -0.14 -7.27 16 21 H 0.07 1.87 7.85 -52.49 -0.41 1.46 16 22 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 23 N -0.91 -26.36 10.72 55.49 0.59 -25.77 16 24 Si 0.91 21.98 29.57 -169.99 -5.03 16.95 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.09 1.94 6.51 -2.53 -0.02 1.92 16 29 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 30 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 31 H 0.09 0.45 7.77 -51.93 -0.40 0.05 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.36 6.04 -51.93 -0.31 0.04 16 34 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.44 6.94 -51.93 -0.36 1.08 16 42 H 0.02 0.53 7.62 -51.93 -0.40 0.13 16 43 H 0.06 1.59 6.78 -51.93 -0.35 1.24 16 44 H 0.00 -0.06 6.37 -51.93 -0.33 -0.39 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.07 1.51 7.99 -51.93 -0.41 1.10 16 47 H 0.07 1.51 6.34 -51.93 -0.33 1.18 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -36.34 365.44 -8.58 -44.91 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.40 Total: -1.74 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 0.23 Total: 19.30 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.98 Total: -59.73 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.91 Total: -25.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.34 -8.58 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.039 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds