Wall clock time and date at job start Fri Apr 10 2020 18:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99680 * 2 1 4 4 N 1.34766 * 120.00399 * 179.97438 * 2 1 3 5 5 C 1.47158 * 120.98091 * 0.02562 * 4 2 1 6 6 C 1.53298 * 108.38575 * 230.51512 * 5 4 2 7 7 O 1.42964 * 109.22090 * 307.69337 * 6 5 4 8 8 C 1.42963 * 114.16377 * 62.58037 * 7 6 5 9 9 H 1.09004 * 109.51350 * 57.34448 * 8 7 6 10 10 C 1.50701 * 109.51325 * 177.49445 * 8 7 6 11 11 O 1.21286 * 119.99523 * 8.16715 * 10 8 7 12 12 N 1.34772 * 120.00506 * 188.16812 * 10 8 7 13 13 C 1.48216 * 119.96916 * 4.22254 * 12 10 8 14 14 C 1.47148 * 110.34466 * 102.46423 * 13 12 10 15 15 C 1.53794 * 111.83730 * 58.29458 * 14 13 12 16 16 N 1.43460 * 107.96728 * 281.67632 * 15 14 13 17 17 C 1.36940 * 118.93571 * 273.63311 * 16 15 14 18 18 H 1.07998 * 120.00520 * 23.28386 * 17 16 15 19 19 C 1.38817 * 119.99526 * 203.28851 * 17 16 15 20 20 N 1.31613 * 120.00229 * 18.61767 * 19 17 16 21 21 Si 1.86806 * 119.99799 * 198.61558 * 19 17 16 22 22 H 1.48496 * 109.47027 * 89.99683 * 21 19 17 23 23 H 1.48502 * 109.47104 * 210.00148 * 21 19 17 24 24 H 1.48504 * 109.46929 * 329.99820 * 21 19 17 25 25 C 1.48853 * 122.12387 * 93.60418 * 16 15 14 26 26 C 1.43619 * 119.97688 * 183.94772 * 12 10 8 27 27 C 1.47153 * 120.98500 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.46886 * 270.00493 * 1 2 3 29 29 H 1.09006 * 109.47259 * 30.00173 * 1 2 3 30 30 H 1.08996 * 109.47258 * 150.00646 * 1 2 3 31 31 H 1.08992 * 109.68242 * 110.78677 * 5 4 2 32 32 H 1.09007 * 109.71034 * 350.25480 * 5 4 2 33 33 H 1.09000 * 109.51336 * 67.61526 * 6 5 4 34 34 H 1.08992 * 109.51181 * 187.77365 * 6 5 4 35 35 H 1.08999 * 109.32316 * 222.72976 * 13 12 10 36 36 H 1.08997 * 109.32638 * 342.20081 * 13 12 10 37 37 H 1.08999 * 109.00339 * 178.90453 * 14 13 12 38 38 H 1.09002 * 109.00734 * 297.76857 * 14 13 12 39 39 H 1.09005 * 109.76656 * 41.29053 * 15 14 13 40 40 H 1.09005 * 109.75993 * 162.05560 * 15 14 13 41 41 H 0.97006 * 119.99861 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47695 * 80.63087 * 25 16 15 43 43 H 1.08995 * 109.48285 * 200.65967 * 25 16 15 44 44 H 1.08999 * 108.86960 * 31.46609 * 26 12 10 45 45 H 1.08998 * 108.87662 * 149.90954 * 26 12 10 46 46 H 1.09001 * 109.68171 * 249.20799 * 27 4 2 47 47 H 1.08994 * 109.68236 * 9.76147 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4671 -2.4539 0.0005 6 6 2.0411 -3.3252 1.1237 7 8 3.4631 -3.3880 0.9907 8 6 4.1197 -2.1251 1.1237 9 1 3.8708 -1.6852 2.0895 10 6 5.6109 -2.3204 1.0277 11 8 6.0619 -3.4020 0.7152 12 7 6.4434 -1.2932 1.2891 13 6 5.8968 0.0010 1.7614 14 6 6.0981 0.1424 3.2122 15 6 7.5849 0.0528 3.5949 16 7 7.9619 -1.3313 3.5845 17 6 7.7629 -2.0807 4.7132 18 1 7.0198 -1.7802 5.4370 19 6 8.5165 -3.2268 4.9271 20 7 9.6439 -3.4049 4.2719 21 14 7.9303 -4.5162 6.1451 22 1 7.0766 -5.5081 5.4434 23 1 9.1037 -5.2053 6.7395 24 1 7.1445 -3.8599 7.2208 25 6 8.5619 -1.9793 2.3862 26 6 7.8598 -1.4554 1.1155 27 6 3.6522 -1.1923 0.0000 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6079 -2.9518 -0.9587 32 1 0.4043 -2.2848 0.1738 33 1 1.7847 -2.8897 2.0895 34 1 1.6243 -4.3299 1.0542 35 1 6.4040 0.8164 1.2457 36 1 4.8306 0.0449 1.5393 37 1 5.7066 1.1080 3.5324 38 1 5.5523 -0.6495 3.7252 39 1 8.1857 0.6038 2.8713 40 1 7.7346 0.4681 4.5916 41 1 10.1703 -4.2060 4.4211 42 1 9.6249 -1.7428 2.3391 43 1 8.4323 -3.0594 2.4538 44 1 8.0369 -2.1613 0.3040 45 1 8.2943 -0.4932 0.8446 46 1 4.0127 -1.5635 -0.9594 47 1 4.0366 -0.1872 0.1731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989585021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:13 Heat of formation + Delta-G solvation = -58.126331 kcal Electronic energy + Delta-G solvation = -30208.810773 eV Core-core repulsion = 26200.751155 eV Total energy + Delta-G solvation = -4008.059619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.87560 -39.61097 -38.27789 -36.83917 -35.03497 -34.41989 -32.52342 -32.21381 -30.81820 -30.16943 -28.44597 -27.15496 -25.50028 -24.77080 -23.68433 -22.93636 -21.64662 -19.83379 -19.56996 -18.68754 -17.46609 -17.36502 -16.64627 -16.55784 -16.32895 -15.81731 -15.50495 -15.19080 -14.95767 -14.43087 -14.17789 -13.92279 -13.86499 -13.66010 -13.49127 -13.33965 -13.06996 -12.72862 -12.46256 -12.45180 -12.30588 -12.06865 -11.86080 -11.48174 -11.24009 -11.12656 -10.90523 -10.70471 -10.53829 -10.40468 -10.31472 -10.12784 -10.09661 -9.74109 -9.68492 -9.28808 -8.85044 -8.38309 -8.05250 -6.67561 -5.72811 -3.12104 2.28559 2.49108 2.91047 3.13345 3.43753 3.50190 3.51872 3.90361 4.19503 4.40674 4.56232 4.57355 4.63032 4.70362 4.81142 4.90200 4.94497 5.05574 5.07169 5.25811 5.31914 5.40772 5.45613 5.49947 5.54024 5.59646 5.66600 5.80574 5.88495 5.97272 6.17461 6.19445 6.39531 6.41719 6.45461 6.78290 6.81861 6.97514 6.99591 7.05205 7.47118 7.65294 7.80566 7.83188 7.90320 8.49853 8.64674 9.26509 9.95933 10.40255 11.35502 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.004159 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.115211 B = 6731.438894 C = 7304.000895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.514 3.486 3 O -0.542 6.542 4 N -0.617 5.617 5 C 0.068 3.932 6 C 0.044 3.956 7 O -0.346 6.346 8 C 0.065 3.935 9 H 0.087 0.913 10 C 0.524 3.476 11 O -0.516 6.516 12 N -0.579 5.579 13 C 0.113 3.887 14 C -0.174 4.174 15 C 0.164 3.836 16 N -0.591 5.591 17 C -0.259 4.259 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.896 3.104 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.166 3.834 26 C 0.093 3.907 27 C 0.084 3.916 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 6.147 -9.935 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.303 3.697 3 O -0.419 6.419 4 N -0.352 5.352 5 C -0.055 4.055 6 C -0.033 4.033 7 O -0.263 6.263 8 C 0.003 3.997 9 H 0.104 0.896 10 C 0.309 3.691 11 O -0.390 6.390 12 N -0.313 5.313 13 C -0.009 4.009 14 C -0.216 4.216 15 C 0.035 3.965 16 N -0.312 5.312 17 C -0.388 4.388 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.726 3.274 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.040 3.960 26 C -0.032 4.032 27 C -0.039 4.039 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.686 5.834 -10.148 21.209 hybrid contribution -0.563 -0.613 0.852 1.192 sum -18.250 5.221 -9.296 21.136 Atomic orbital electron populations 1.21962 0.91453 1.04989 1.04984 1.20866 0.90724 0.82765 0.75337 1.90734 1.70641 1.30788 1.49730 1.48238 1.06647 1.06310 1.74022 1.22606 0.97537 0.84252 1.01077 1.23059 0.81883 1.01279 0.97127 1.88151 1.17868 1.27274 1.93055 1.22296 0.92456 0.85828 0.99134 0.89554 1.19597 0.86733 0.84448 0.78315 1.90715 1.77289 1.24221 1.46819 1.47287 1.06856 1.11966 1.65149 1.20981 0.98523 0.84941 0.96438 1.21951 1.03310 1.00944 0.95376 1.20232 0.90751 0.86974 0.98569 1.43704 1.72655 1.04363 1.10488 1.19121 1.14710 1.05627 0.99371 0.91821 1.24898 0.95162 1.00241 0.98792 1.70041 1.12134 1.27393 1.45038 0.86387 0.77849 0.82418 0.80701 1.21399 1.21802 1.20612 1.21766 0.93637 0.98716 0.81859 1.21896 0.79463 1.00748 1.01076 1.22398 0.79957 1.02177 0.99368 0.88604 0.88687 0.89869 0.90003 0.88208 0.92313 0.86957 0.91128 0.90983 0.92303 0.91571 0.94719 0.93550 0.93681 0.94218 0.90286 0.91076 0.92255 0.90007 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 9.44 36.01 0.34 -0.68 16 2 C 0.51 5.50 7.82 -10.99 -0.09 5.41 16 3 O -0.54 -8.01 16.57 5.56 0.09 -7.92 16 4 N -0.62 -6.47 3.02 -172.25 -0.52 -6.99 16 5 C 0.07 0.51 6.39 -3.53 -0.02 0.49 16 6 C 0.04 0.43 6.99 37.31 0.26 0.69 16 7 O -0.35 -5.42 9.93 -54.98 -0.55 -5.97 16 8 C 0.07 1.01 2.33 -27.71 -0.06 0.94 16 9 H 0.09 1.32 7.50 -51.93 -0.39 0.93 16 10 C 0.52 10.24 7.02 -10.99 -0.08 10.16 16 11 O -0.52 -12.27 16.11 -14.20 -0.23 -12.50 16 12 N -0.58 -10.57 2.47 -177.00 -0.44 -11.00 16 13 C 0.11 1.71 5.09 -5.91 -0.03 1.68 16 14 C -0.17 -2.94 5.64 -29.13 -0.16 -3.10 16 15 C 0.16 3.28 5.63 -5.24 -0.03 3.25 16 16 N -0.59 -14.58 2.54 -172.33 -0.44 -15.02 16 17 C -0.26 -7.18 9.27 -15.06 -0.14 -7.32 16 18 H 0.06 1.75 7.90 -52.49 -0.41 1.34 16 19 C 0.01 0.22 4.85 -17.43 -0.08 0.14 16 20 N -0.90 -26.78 11.05 55.49 0.61 -26.16 16 21 Si 0.90 22.69 29.59 -169.99 -5.03 17.66 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.17 4.03 5.19 -2.04 -0.01 4.02 16 26 C 0.09 1.81 5.18 -4.87 -0.03 1.78 16 27 C 0.08 1.08 5.55 -3.51 -0.02 1.06 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.29 6.28 -51.93 -0.33 -0.03 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.40 5.68 -51.93 -0.30 0.10 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.07 0.99 4.02 -51.93 -0.21 0.78 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 39 H 0.03 0.64 7.58 -51.93 -0.39 0.25 16 40 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.04 1.02 8.02 -51.93 -0.42 0.60 16 43 H 0.08 2.26 6.50 -51.93 -0.34 1.93 16 44 H 0.07 1.41 7.43 -51.93 -0.39 1.02 16 45 H 0.06 1.00 7.73 -51.93 -0.40 0.60 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.11 1.51 4.64 -51.93 -0.24 1.27 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -36.50 361.54 -8.35 -44.85 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.15 Total: -0.93 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: -0.15 Total: 18.53 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.78 Total: -59.18 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.68 Total: -26.39 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.50 -8.35 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989585021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.278 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds