Wall clock time and date at job start Fri Apr 10 2020 18:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99680 * 2 1 4 4 N 1.34766 * 120.00399 * 179.97438 * 2 1 3 5 5 C 1.47158 * 120.98091 * 0.02562 * 4 2 1 6 6 C 1.53298 * 108.38575 * 230.51512 * 5 4 2 7 7 O 1.42964 * 109.22090 * 307.69337 * 6 5 4 8 8 C 1.42963 * 114.16377 * 62.58037 * 7 6 5 9 9 H 1.09004 * 109.51350 * 57.34448 * 8 7 6 10 10 C 1.50701 * 109.51325 * 177.49445 * 8 7 6 11 11 O 1.21286 * 119.99523 * 8.16715 * 10 8 7 12 12 N 1.34772 * 120.00506 * 188.16812 * 10 8 7 13 13 C 1.48216 * 119.96916 * 4.22254 * 12 10 8 14 14 C 1.47148 * 110.34466 * 102.46423 * 13 12 10 15 15 C 1.53794 * 111.83730 * 58.29458 * 14 13 12 16 16 N 1.43460 * 107.96728 * 281.67632 * 15 14 13 17 17 C 1.36940 * 118.93571 * 273.63311 * 16 15 14 18 18 H 1.07998 * 120.00520 * 23.28386 * 17 16 15 19 19 C 1.38817 * 119.99526 * 203.28851 * 17 16 15 20 20 N 1.31613 * 120.00229 * 18.61767 * 19 17 16 21 21 Si 1.86806 * 119.99799 * 198.61558 * 19 17 16 22 22 H 1.48496 * 109.47027 * 89.99683 * 21 19 17 23 23 H 1.48502 * 109.47104 * 210.00148 * 21 19 17 24 24 H 1.48504 * 109.46929 * 329.99820 * 21 19 17 25 25 C 1.48853 * 122.12387 * 93.60418 * 16 15 14 26 26 C 1.43619 * 119.97688 * 183.94772 * 12 10 8 27 27 C 1.47153 * 120.98500 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.46886 * 270.00493 * 1 2 3 29 29 H 1.09006 * 109.47259 * 30.00173 * 1 2 3 30 30 H 1.08996 * 109.47258 * 150.00646 * 1 2 3 31 31 H 1.08992 * 109.68242 * 110.78677 * 5 4 2 32 32 H 1.09007 * 109.71034 * 350.25480 * 5 4 2 33 33 H 1.09000 * 109.51336 * 67.61526 * 6 5 4 34 34 H 1.08992 * 109.51181 * 187.77365 * 6 5 4 35 35 H 1.08999 * 109.32316 * 222.72976 * 13 12 10 36 36 H 1.08997 * 109.32638 * 342.20081 * 13 12 10 37 37 H 1.08999 * 109.00339 * 178.90453 * 14 13 12 38 38 H 1.09002 * 109.00734 * 297.76857 * 14 13 12 39 39 H 1.09005 * 109.76656 * 41.29053 * 15 14 13 40 40 H 1.09005 * 109.75993 * 162.05560 * 15 14 13 41 41 H 0.97006 * 119.99861 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47695 * 80.63087 * 25 16 15 43 43 H 1.08995 * 109.48285 * 200.65967 * 25 16 15 44 44 H 1.08999 * 108.86960 * 31.46609 * 26 12 10 45 45 H 1.08998 * 108.87662 * 149.90954 * 26 12 10 46 46 H 1.09001 * 109.68171 * 249.20799 * 27 4 2 47 47 H 1.08994 * 109.68236 * 9.76147 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4671 -2.4539 0.0005 6 6 2.0411 -3.3252 1.1237 7 8 3.4631 -3.3880 0.9907 8 6 4.1197 -2.1251 1.1237 9 1 3.8708 -1.6852 2.0895 10 6 5.6109 -2.3204 1.0277 11 8 6.0619 -3.4020 0.7152 12 7 6.4434 -1.2932 1.2891 13 6 5.8968 0.0010 1.7614 14 6 6.0981 0.1424 3.2122 15 6 7.5849 0.0528 3.5949 16 7 7.9619 -1.3313 3.5845 17 6 7.7629 -2.0807 4.7132 18 1 7.0198 -1.7802 5.4370 19 6 8.5165 -3.2268 4.9271 20 7 9.6439 -3.4049 4.2719 21 14 7.9303 -4.5162 6.1451 22 1 7.0766 -5.5081 5.4434 23 1 9.1037 -5.2053 6.7395 24 1 7.1445 -3.8599 7.2208 25 6 8.5619 -1.9793 2.3862 26 6 7.8598 -1.4554 1.1155 27 6 3.6522 -1.1923 0.0000 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6079 -2.9518 -0.9587 32 1 0.4043 -2.2848 0.1738 33 1 1.7847 -2.8897 2.0895 34 1 1.6243 -4.3299 1.0542 35 1 6.4040 0.8164 1.2457 36 1 4.8306 0.0449 1.5393 37 1 5.7066 1.1080 3.5324 38 1 5.5523 -0.6495 3.7252 39 1 8.1857 0.6038 2.8713 40 1 7.7346 0.4681 4.5916 41 1 10.1703 -4.2060 4.4211 42 1 9.6249 -1.7428 2.3391 43 1 8.4323 -3.0594 2.4538 44 1 8.0369 -2.1613 0.3040 45 1 8.2943 -0.4932 0.8446 46 1 4.0127 -1.5635 -0.9594 47 1 4.0366 -0.1872 0.1731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989585021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:12 Heat of formation + Delta-G solvation = -84.082995 kcal Electronic energy + Delta-G solvation = -30209.936339 eV Core-core repulsion = 26200.751155 eV Total energy + Delta-G solvation = -4009.185184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98167 -40.81926 -39.37711 -38.44901 -36.26889 -35.87744 -34.00195 -33.63746 -32.49318 -30.80978 -29.79173 -28.45850 -27.19662 -25.89605 -25.35689 -24.06746 -22.94513 -21.53534 -20.59112 -19.94870 -18.87222 -18.33681 -18.27676 -17.83823 -17.43419 -16.88343 -16.70170 -16.63530 -16.22076 -15.85738 -15.61109 -15.52693 -15.01555 -14.95610 -14.71339 -14.58477 -14.29131 -13.99414 -13.76328 -13.68581 -13.39810 -13.14009 -13.00955 -12.86675 -12.80805 -12.70547 -12.43122 -12.32079 -12.09125 -12.01368 -11.76196 -11.70964 -11.46510 -11.39604 -11.00270 -10.72604 -10.51472 -9.77019 -9.62944 -8.72051 -7.88665 -5.29026 1.36670 1.37812 1.42788 1.47543 1.54106 1.73010 1.88612 2.48035 2.79140 3.25709 3.32490 3.43145 3.59488 3.68785 3.74751 3.88289 3.92752 4.12111 4.21134 4.23496 4.28072 4.30137 4.45788 4.49760 4.51055 4.58358 4.65239 4.69405 4.76329 4.78327 4.85835 4.89537 4.94622 5.09275 5.17891 5.22049 5.26623 5.46233 5.54617 5.67487 5.74967 5.95842 6.27257 6.36457 6.38346 7.03425 7.12629 7.15869 7.92625 8.32842 9.16796 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.004159 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.115211 B = 6731.438894 C = 7304.000895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.589 6.589 4 N -0.617 5.617 5 C 0.071 3.929 6 C 0.033 3.967 7 O -0.385 6.385 8 C 0.079 3.921 9 H 0.087 0.913 10 C 0.513 3.487 11 O -0.571 6.571 12 N -0.579 5.579 13 C 0.111 3.889 14 C -0.160 4.160 15 C 0.155 3.845 16 N -0.604 5.604 17 C -0.258 4.258 18 H 0.064 0.936 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.951 3.049 22 H -0.299 1.299 23 H -0.292 1.292 24 H -0.264 1.264 25 C 0.178 3.822 26 C 0.104 3.896 27 C 0.093 3.907 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.246 0.754 42 H 0.019 0.981 43 H 0.026 0.974 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.051 7.948 -10.380 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.470 6.470 4 N -0.352 5.352 5 C -0.051 4.051 6 C -0.043 4.043 7 O -0.303 6.303 8 C 0.017 3.983 9 H 0.105 0.895 10 C 0.300 3.700 11 O -0.450 6.450 12 N -0.311 5.311 13 C -0.009 4.009 14 C -0.200 4.200 15 C 0.028 3.972 16 N -0.327 5.327 17 C -0.389 4.389 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.579 5.579 21 Si 0.781 3.219 22 H -0.227 1.227 23 H -0.218 1.218 24 H -0.188 1.188 25 C 0.052 3.948 26 C -0.021 4.021 27 C -0.031 4.031 28 H 0.132 0.868 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.296 7.689 -10.579 24.991 hybrid contribution 0.495 -1.141 1.002 1.597 sum -20.802 6.548 -9.577 23.818 Atomic orbital electron populations 1.22020 0.87259 1.06652 1.06624 1.21797 0.92596 0.81795 0.73832 1.90710 1.71935 1.32411 1.51897 1.48373 1.05516 1.07680 1.73605 1.22820 0.99368 0.82392 1.00479 1.23457 0.78941 1.03452 0.98477 1.88104 1.21263 1.27550 1.93385 1.22071 0.89567 0.86611 1.00082 0.89507 1.20478 0.88800 0.83737 0.77017 1.90677 1.78620 1.26398 1.49300 1.47454 1.06183 1.13008 1.64447 1.21231 1.00122 0.84050 0.95516 1.21734 1.00123 1.01985 0.96189 1.20498 0.93089 0.84495 0.99134 1.43907 1.72833 1.06199 1.09723 1.19421 1.13693 1.05875 0.99913 0.91791 1.25589 0.95614 1.02222 1.01039 1.70182 1.13281 1.27500 1.46887 0.85494 0.77201 0.80007 0.79230 1.22696 1.21825 1.18805 1.21415 0.93282 0.95884 0.84229 1.21606 0.80458 1.02119 0.97924 1.22111 0.82141 1.00946 0.97882 0.86753 0.88398 0.86902 0.89328 0.83739 0.91714 0.84694 0.87994 0.89013 0.88493 0.94373 0.92589 0.94104 0.94461 0.96342 0.95559 0.91897 0.88583 0.90581 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.44 71.24 0.67 -0.52 16 2 C 0.51 9.31 7.82 87.66 0.69 9.99 16 3 O -0.59 -16.21 16.57 -3.03 -0.05 -16.26 16 4 N -0.62 -11.21 3.02 -817.26 -2.47 -13.68 16 5 C 0.07 0.80 6.39 86.35 0.55 1.35 16 6 C 0.03 0.56 6.99 72.08 0.50 1.07 16 7 O -0.38 -11.89 9.93 -130.10 -1.29 -13.18 16 8 C 0.08 2.40 2.33 29.96 0.07 2.47 16 9 H 0.09 2.58 7.50 -2.38 -0.02 2.57 16 10 C 0.51 20.39 7.02 87.66 0.61 21.01 16 11 O -0.57 -28.53 16.11 15.83 0.26 -28.27 16 12 N -0.58 -20.86 2.47 -832.30 -2.05 -22.91 16 13 C 0.11 3.07 5.09 84.23 0.43 3.50 16 14 C -0.16 -4.99 5.64 29.04 0.16 -4.83 16 15 C 0.15 5.98 5.63 87.21 0.49 6.48 16 16 N -0.60 -30.25 2.54 -699.14 -1.78 -32.03 16 17 C -0.26 -14.64 9.27 84.03 0.78 -13.86 16 18 H 0.06 3.55 7.90 -2.91 -0.02 3.53 16 19 C -0.05 -2.91 4.85 84.86 0.41 -2.49 16 20 N -0.93 -57.92 11.05 21.65 0.24 -57.68 16 21 Si 0.95 48.05 29.59 68.60 2.03 50.08 16 22 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 24 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.18 9.01 5.19 86.38 0.45 9.46 16 26 C 0.10 4.08 5.18 87.37 0.45 4.54 16 27 C 0.09 2.27 5.55 86.37 0.48 2.75 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.11 0.13 6.28 -2.39 -0.02 0.12 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.14 0.33 5.68 -2.38 -0.01 0.32 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.14 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.10 2.28 8.06 -2.39 -0.02 2.26 16 36 H 0.09 2.26 4.02 -2.39 -0.01 2.25 16 37 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.04 1.42 7.91 -2.39 -0.02 1.40 16 39 H 0.06 1.93 7.58 -2.38 -0.02 1.91 16 40 H 0.04 1.62 8.02 -2.38 -0.02 1.60 16 41 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 42 H 0.02 1.00 8.02 -2.39 -0.02 0.98 16 43 H 0.03 1.59 6.50 -2.39 -0.02 1.57 16 44 H 0.06 2.58 7.43 -2.39 -0.02 2.56 16 45 H 0.10 3.06 7.73 -2.39 -0.02 3.04 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.11 2.76 4.64 -2.39 -0.01 2.74 16 Total: -1.00 -86.11 361.54 2.61 -83.50 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.98 Total: 9.53 kcal Atomic # 6 Polarization: 34.15 SS G_CDS: 6.75 Total: 40.90 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -6.06 Total: -126.30 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -1.09 Total: -57.71 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -86.11 2.61 -83.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989585021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.583 kcal (2) G-P(sol) polarization free energy of solvation -86.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds