Wall clock time and date at job start Fri Apr 10 2020 18:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00060 * 2 1 4 4 N 1.34775 * 120.00368 * 180.02562 * 2 1 3 5 5 C 1.47148 * 120.98061 * 6.14118 * 4 2 1 6 6 C 1.53295 * 108.38519 * 129.44420 * 5 4 2 7 7 O 1.42965 * 109.22179 * 52.30464 * 6 5 4 8 8 C 1.42957 * 114.16370 * 297.41952 * 7 6 5 9 9 H 1.09000 * 109.55817 * 302.62840 * 8 7 6 10 10 C 1.50698 * 109.51238 * 182.50425 * 8 7 6 11 11 O 1.21284 * 119.99887 * 346.95893 * 10 8 7 12 12 N 1.34777 * 120.00518 * 166.96456 * 10 8 7 13 13 C 1.48210 * 119.97465 * 175.26600 * 12 10 8 14 14 C 1.47142 * 110.34835 * 102.50480 * 13 12 10 15 15 C 1.53241 * 111.81129 * 58.22375 * 14 13 12 16 16 N 1.43461 * 108.26418 * 281.68072 * 15 14 13 17 17 C 1.36939 * 118.94178 * 273.77883 * 16 15 14 18 18 H 1.07995 * 119.99508 * 40.49458 * 17 16 15 19 19 C 1.38805 * 119.99931 * 220.50266 * 17 16 15 20 20 N 1.31623 * 120.00297 * 19.61998 * 19 17 16 21 21 Si 1.86802 * 119.99912 * 199.62184 * 19 17 16 22 22 H 1.48503 * 109.47109 * 59.99752 * 21 19 17 23 23 H 1.48504 * 109.47500 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46974 * 299.99897 * 21 19 17 25 25 C 1.48864 * 122.11963 * 93.50765 * 16 15 14 26 26 C 1.43622 * 119.96817 * 355.28348 * 12 10 8 27 27 C 1.47153 * 120.98469 * 186.12176 * 4 2 1 28 28 H 1.09000 * 109.47001 * 181.28635 * 1 2 3 29 29 H 1.09008 * 109.46859 * 301.28370 * 1 2 3 30 30 H 1.08994 * 109.47219 * 61.28306 * 1 2 3 31 31 H 1.08994 * 109.68831 * 249.17250 * 5 4 2 32 32 H 1.09004 * 109.67775 * 9.68733 * 5 4 2 33 33 H 1.09000 * 109.51299 * 172.22773 * 6 5 4 34 34 H 1.09005 * 109.51277 * 292.33272 * 6 5 4 35 35 H 1.09003 * 109.32206 * 222.77115 * 13 12 10 36 36 H 1.09001 * 109.32299 * 342.41143 * 13 12 10 37 37 H 1.08996 * 109.00431 * 178.90144 * 14 13 12 38 38 H 1.08994 * 109.00449 * 297.76787 * 14 13 12 39 39 H 1.09001 * 109.49130 * 162.03911 * 15 14 13 40 40 H 1.09002 * 109.73719 * 41.46149 * 15 14 13 41 41 H 0.96996 * 120.00369 * 6.34225 * 20 19 17 42 42 H 1.08997 * 109.48326 * 80.87326 * 25 16 15 43 43 H 1.09002 * 109.47790 * 200.90109 * 25 16 15 44 44 H 1.08996 * 108.87369 * 149.86890 * 26 12 10 45 45 H 1.08997 * 108.87839 * 31.42998 * 26 12 10 46 46 H 1.09001 * 109.68023 * 110.83079 * 27 4 2 47 47 H 1.09001 * 109.71035 * 350.30154 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4734 -2.4503 -0.1361 6 6 2.1509 -3.2609 -1.2468 7 8 3.5547 -3.3344 -0.9866 8 6 4.2176 -2.0678 -0.9899 9 1 4.0588 -1.5754 -1.9492 10 6 5.6940 -2.2718 -0.7672 11 8 6.1072 -3.3470 -0.3875 12 7 6.5554 -1.2594 -0.9899 13 6 7.9931 -1.4268 -0.6713 14 6 8.7648 -1.6690 -1.9005 15 6 8.6013 -0.5274 -2.9096 16 7 7.3357 -0.6856 -3.5664 17 6 7.2580 -1.4936 -4.6693 18 1 7.7962 -2.4296 -4.6919 19 6 6.4875 -1.1094 -5.7581 20 7 6.1517 0.1537 -5.9138 21 14 5.9273 -2.3850 -7.0025 22 1 5.0982 -3.4111 -6.3205 23 1 5.1234 -1.7237 -8.0616 24 1 7.1144 -3.0344 -7.6142 25 6 6.1031 -0.0045 -3.0841 26 6 6.0792 -0.0191 -1.5355 27 6 3.6460 -1.1960 0.1340 28 1 -0.3633 -1.0274 0.0231 29 1 -0.3633 0.5337 0.8783 30 1 -0.3633 0.4937 -0.9012 31 1 1.5262 -2.9997 0.8038 32 1 0.4308 -2.2687 -0.3971 33 1 1.7319 -4.2669 -1.2706 34 1 1.9830 -2.7737 -2.2073 35 1 8.3624 -0.5235 -0.1856 36 1 8.1169 -2.2748 0.0023 37 1 9.8193 -1.7692 -1.6436 38 1 8.4214 -2.5967 -2.3581 39 1 9.4058 -0.5729 -3.6437 40 1 8.6296 0.4303 -2.3898 41 1 6.5171 0.8293 -5.3215 42 1 6.0952 1.0264 -3.4380 43 1 5.2260 -0.5268 -3.4662 44 1 6.7056 0.7925 -1.1655 45 1 5.0562 0.1453 -1.1972 46 1 3.9176 -1.6191 1.1011 47 1 4.0427 -0.1841 0.0517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989585022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:16 Heat of formation + Delta-G solvation = -66.045427 kcal Electronic energy + Delta-G solvation = -30411.499667 eV Core-core repulsion = 26403.096651 eV Total energy + Delta-G solvation = -4008.403017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83926 -39.65318 -38.24137 -36.96833 -34.98156 -34.43768 -33.31345 -31.77504 -30.85091 -30.07182 -28.14097 -27.40954 -25.43707 -24.68916 -23.66246 -23.09982 -21.58566 -19.83276 -19.57804 -18.75049 -17.53667 -17.42723 -17.04565 -16.60291 -16.24261 -15.79022 -15.56081 -15.22332 -14.85086 -14.44876 -14.23132 -14.08999 -13.82399 -13.67325 -13.46150 -13.29940 -13.12387 -12.87081 -12.57918 -12.36043 -12.30495 -12.20176 -11.75787 -11.70575 -11.34966 -11.20531 -10.97030 -10.70463 -10.37521 -10.32118 -10.29086 -10.26537 -10.02868 -10.00993 -9.38380 -9.27316 -8.78421 -8.37948 -8.20385 -6.79528 -5.98468 -3.43048 2.37504 2.54140 2.82077 3.08464 3.47833 3.50195 3.68211 3.91923 4.27662 4.46777 4.56922 4.57661 4.69682 4.73525 4.89610 5.01790 5.03967 5.08860 5.17010 5.30155 5.34952 5.39945 5.48898 5.50572 5.52605 5.59693 5.65663 5.69093 5.86620 5.92975 5.98562 6.04564 6.15544 6.37542 6.44048 6.62374 6.80295 6.85466 6.87608 6.99214 7.08125 7.16772 7.76804 7.90186 8.17135 8.48790 8.61087 9.17811 9.81149 10.26604 11.18332 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.005009 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.129880 B = 5588.265510 C = 6322.787627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.514 3.486 3 O -0.540 6.540 4 N -0.617 5.617 5 C 0.068 3.932 6 C 0.044 3.956 7 O -0.348 6.348 8 C 0.062 3.938 9 H 0.093 0.907 10 C 0.532 3.468 11 O -0.528 6.528 12 N -0.581 5.581 13 C 0.132 3.868 14 C -0.169 4.169 15 C 0.164 3.836 16 N -0.591 5.591 17 C -0.354 4.354 18 H 0.046 0.954 19 C -0.013 4.013 20 N -0.912 5.912 21 Si 1.061 2.939 22 H -0.293 1.293 23 H -0.285 1.285 24 H -0.291 1.291 25 C 0.138 3.862 26 C 0.078 3.922 27 C 0.088 3.912 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.030 0.970 41 H 0.269 0.731 42 H 0.039 0.961 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 -1.768 13.464 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.304 3.696 3 O -0.417 6.417 4 N -0.352 5.352 5 C -0.055 4.055 6 C -0.034 4.034 7 O -0.265 6.265 8 C 0.000 4.000 9 H 0.111 0.889 10 C 0.318 3.682 11 O -0.404 6.404 12 N -0.313 5.313 13 C 0.011 3.989 14 C -0.210 4.210 15 C 0.036 3.964 16 N -0.314 5.314 17 C -0.484 4.484 18 H 0.064 0.936 19 C -0.217 4.217 20 N -0.551 5.551 21 Si 0.891 3.109 22 H -0.220 1.220 23 H -0.211 1.211 24 H -0.218 1.218 25 C 0.012 3.988 26 C -0.048 4.048 27 C -0.035 4.035 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.627 -2.142 12.340 16.426 hybrid contribution 0.744 0.335 1.146 1.407 sum -9.883 -1.807 13.487 16.817 Atomic orbital electron populations 1.22005 0.91440 1.04551 1.05587 1.20871 0.90741 0.82770 0.75235 1.90742 1.70553 1.30805 1.49579 1.48208 1.07022 1.06540 1.73462 1.22648 0.97472 0.84535 1.00873 1.23074 0.81782 1.01653 0.96905 1.88100 1.19679 1.26529 1.92217 1.22311 0.91545 0.86211 0.99897 0.88940 1.19672 0.86700 0.84105 0.77737 1.90661 1.78895 1.24500 1.46330 1.47278 1.08079 1.14018 1.61964 1.20599 0.78974 1.01510 0.97773 1.21744 0.98187 1.03607 0.97505 1.20230 0.89263 0.93528 0.93362 1.43560 1.01354 1.55666 1.30785 1.19809 1.34641 1.00321 0.93589 0.93635 1.26006 0.98912 0.99554 0.97187 1.70792 1.45582 1.00055 1.38629 0.83592 0.76502 0.74763 0.76071 1.21961 1.21055 1.21756 1.22119 0.90925 0.96959 0.88785 1.22192 0.99433 0.85565 0.97576 1.22254 0.80144 1.02454 0.98678 0.89977 0.88553 0.88430 0.90102 0.87954 0.86941 0.92021 0.91758 0.90352 0.92408 0.91186 0.93337 0.95182 0.92020 0.94363 0.92446 0.91139 0.91068 0.90148 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 10.06 36.00 0.36 -0.91 16 2 C 0.51 6.26 7.81 -10.99 -0.09 6.18 16 3 O -0.54 -8.87 16.57 5.55 0.09 -8.78 16 4 N -0.62 -7.25 3.02 -172.28 -0.52 -7.77 16 5 C 0.07 0.57 6.43 -3.54 -0.02 0.55 16 6 C 0.04 0.48 6.98 37.31 0.26 0.74 16 7 O -0.35 -5.72 9.95 -54.77 -0.55 -6.26 16 8 C 0.06 1.04 2.34 -27.73 -0.06 0.98 16 9 H 0.09 1.67 6.61 -51.93 -0.34 1.32 16 10 C 0.53 10.31 6.98 -10.99 -0.08 10.23 16 11 O -0.53 -11.80 16.02 -13.98 -0.22 -12.03 16 12 N -0.58 -10.50 2.46 -176.65 -0.43 -10.93 16 13 C 0.13 2.22 5.67 -5.91 -0.03 2.19 16 14 C -0.17 -3.14 5.63 -29.42 -0.17 -3.31 16 15 C 0.16 3.40 5.59 -5.53 -0.03 3.36 16 16 N -0.59 -14.31 2.20 -172.34 -0.38 -14.69 16 17 C -0.35 -9.81 8.99 -15.06 -0.14 -9.94 16 18 H 0.05 1.32 7.90 -52.49 -0.41 0.91 16 19 C -0.01 -0.36 4.87 -17.43 -0.08 -0.45 16 20 N -0.91 -26.84 13.03 55.49 0.72 -26.12 16 21 Si 1.06 25.49 29.96 -169.99 -5.09 20.39 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.14 3.05 5.18 -1.74 -0.01 3.04 16 26 C 0.08 1.36 4.87 -4.58 -0.02 1.33 16 27 C 0.09 1.22 5.65 -3.53 -0.02 1.20 16 28 H 0.08 0.38 5.30 -51.93 -0.28 0.10 16 29 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.53 5.37 -51.93 -0.28 0.25 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.08 1.33 7.18 -51.93 -0.37 0.95 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.56 7.90 -51.93 -0.41 1.15 16 39 H 0.05 1.05 8.02 -51.93 -0.42 0.64 16 40 H 0.03 0.57 7.58 -51.93 -0.39 0.17 16 41 H 0.27 7.92 6.48 -40.82 -0.26 7.66 16 42 H 0.04 0.88 7.09 -51.93 -0.37 0.52 16 43 H 0.06 1.41 6.90 -51.93 -0.36 1.05 16 44 H 0.07 1.11 7.73 -51.93 -0.40 0.71 16 45 H 0.07 1.15 4.27 -51.93 -0.22 0.92 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.11 1.63 4.86 -51.93 -0.25 1.38 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -36.05 359.82 -8.03 -44.08 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.94 Total: 1.48 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -0.13 Total: 15.20 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.61 Total: -59.51 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.68 Total: -27.07 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.05 -8.03 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989585022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.961 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds