Wall clock time and date at job start Fri Apr 10 2020 18:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 120.00098 * 2 1 4 4 N 1.34777 * 119.99462 * 179.97438 * 2 1 3 5 5 C 1.47157 * 120.98734 * 0.02562 * 4 2 1 6 6 C 1.53289 * 108.38472 * 230.51062 * 5 4 2 7 7 O 1.42963 * 109.26916 * 307.72307 * 6 5 4 8 8 C 1.42959 * 114.16918 * 62.49272 * 7 6 5 9 9 H 1.09002 * 109.50796 * 57.45763 * 8 7 6 10 10 C 1.50703 * 109.51124 * 177.55575 * 8 7 6 11 11 O 1.21281 * 119.99982 * 12.61241 * 10 8 7 12 12 N 1.34775 * 120.00057 * 192.61141 * 10 8 7 13 13 C 1.46920 * 120.63082 * 175.36666 * 12 10 8 14 14 C 1.53191 * 108.77647 * 233.63348 * 13 12 10 15 15 C 1.53048 * 109.31345 * 305.36259 * 14 13 12 16 16 C 1.53045 * 109.53463 * 61.36495 * 15 14 13 17 17 H 1.08999 * 109.51880 * 58.60277 * 16 15 14 18 18 N 1.46497 * 109.49596 * 178.68518 * 16 15 14 19 19 C 1.36939 * 120.00159 * 274.83694 * 18 16 15 20 20 H 1.08003 * 119.99504 * 0.02562 * 19 18 16 21 21 C 1.38802 * 120.00233 * 180.27603 * 19 18 16 22 22 N 1.31615 * 120.00230 * 179.72511 * 21 19 18 23 23 Si 1.86797 * 120.00187 * 359.72695 * 21 19 18 24 24 H 1.48501 * 109.47160 * 89.99597 * 23 21 19 25 25 H 1.48500 * 109.47674 * 210.00057 * 23 21 19 26 26 H 1.48505 * 109.47110 * 330.00041 * 23 21 19 27 27 C 1.46924 * 120.62918 * 355.39170 * 12 10 8 28 28 C 1.47154 * 120.98153 * 179.97438 * 4 2 1 29 29 H 1.09008 * 109.46703 * 270.00474 * 1 2 3 30 30 H 1.08993 * 109.46931 * 29.99860 * 1 2 3 31 31 H 1.08995 * 109.47333 * 150.00611 * 1 2 3 32 32 H 1.08996 * 109.67506 * 350.23403 * 5 4 2 33 33 H 1.08998 * 109.67578 * 110.78612 * 5 4 2 34 34 H 1.09005 * 109.51233 * 67.62205 * 6 5 4 35 35 H 1.09001 * 109.51107 * 187.77284 * 6 5 4 36 36 H 1.08994 * 109.58779 * 353.41908 * 13 12 10 37 37 H 1.08999 * 109.59009 * 113.84376 * 13 12 10 38 38 H 1.08999 * 109.49977 * 65.31533 * 14 13 12 39 39 H 1.09000 * 109.49963 * 185.38339 * 14 13 12 40 40 H 1.09003 * 109.45903 * 301.35074 * 15 14 13 41 41 H 1.08999 * 109.46113 * 181.38700 * 15 14 13 42 42 H 0.97000 * 119.99838 * 94.84137 * 18 16 15 43 43 H 0.97006 * 120.00324 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58811 * 6.58201 * 27 12 10 45 45 H 1.09002 * 109.58545 * 246.15318 * 27 12 10 46 46 H 1.09006 * 109.67762 * 9.76826 * 28 4 2 47 47 H 1.08998 * 109.68615 * 249.21671 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4670 -2.4541 0.0005 6 6 2.0410 -3.3254 1.1236 7 8 3.4631 -3.3884 0.9918 8 6 4.1197 -2.1253 1.1236 9 1 3.8716 -1.6851 2.0894 10 6 5.6109 -2.3208 1.0276 11 8 6.0601 -3.3780 0.6384 12 7 6.4453 -1.3208 1.3742 13 6 7.8997 -1.5285 1.3830 14 6 8.4471 -1.1252 2.7558 15 6 8.0152 0.3086 3.0716 16 6 6.4873 0.3840 3.1197 17 1 6.1124 -0.3043 3.8772 18 7 6.0754 1.7498 3.4530 19 6 6.0015 2.1423 4.7629 20 1 6.2473 1.4450 5.5502 21 6 5.6057 3.4346 5.0789 22 7 5.5294 3.8102 6.3380 23 14 5.1812 4.6408 3.7172 24 1 3.7338 4.5407 3.4006 25 1 5.4960 6.0218 4.1631 26 1 5.9763 4.3188 2.5050 27 6 5.9177 -0.0023 1.7511 28 6 3.6521 -1.1926 0.0000 29 1 -0.3633 0.0001 1.0278 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 0.4044 -2.2843 0.1742 33 1 1.6078 -2.9519 -0.9588 34 1 1.7845 -2.8899 2.0894 35 1 1.6240 -4.3301 1.0541 36 1 8.1198 -2.5796 1.1963 37 1 8.3614 -0.9136 0.6105 38 1 8.0541 -1.7996 3.5166 39 1 9.5355 -1.1837 2.7449 40 1 8.3876 0.9791 2.2971 41 1 8.4240 0.6068 4.0371 42 1 5.8550 2.3761 2.7458 43 1 5.2532 4.7135 6.5588 44 1 4.8301 -0.0464 1.8072 45 1 6.2177 0.7371 1.0085 46 1 4.0366 -0.1874 0.1733 47 1 4.0126 -1.5637 -0.9594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000821322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:45 Heat of formation + Delta-G solvation = -80.924551 kcal Electronic energy + Delta-G solvation = -29585.639705 eV Core-core repulsion = 25576.591482 eV Total energy + Delta-G solvation = -4009.048224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01034 -39.83423 -38.43797 -37.33303 -35.07539 -34.48000 -33.20182 -31.87746 -31.34107 -30.15969 -28.88742 -28.01866 -25.68387 -24.45056 -23.70629 -23.00381 -21.69254 -20.27882 -19.70517 -19.06330 -17.81204 -17.59253 -17.38619 -16.75850 -16.37776 -15.86504 -15.66789 -15.36480 -14.79407 -14.68684 -14.50348 -14.06795 -14.01169 -13.91379 -13.72447 -13.52422 -13.27257 -12.91214 -12.72308 -12.68368 -12.44767 -12.36419 -12.14026 -11.93026 -11.45306 -11.23131 -11.10730 -11.03447 -10.74233 -10.54119 -10.51117 -10.40832 -10.14394 -10.07995 -9.69139 -9.63296 -8.98242 -8.91349 -8.57320 -7.34526 -5.81354 -3.18713 2.28986 2.40395 2.56910 2.71594 3.37769 3.41735 3.46233 3.61873 4.17600 4.31064 4.38799 4.51142 4.56593 4.64375 4.74580 4.81751 4.91350 5.01062 5.08019 5.11771 5.16799 5.20229 5.21604 5.25859 5.36318 5.46012 5.46969 5.51579 5.56685 5.60805 5.72400 5.81622 5.95552 5.99356 6.13202 6.25136 6.29499 6.51309 6.71566 6.72983 6.88142 7.00855 7.33997 7.87724 7.92576 8.09553 8.36625 9.13999 9.86592 10.04597 11.36417 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.005055 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.443499 B = 5537.260285 C = 7646.625431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.513 3.487 3 O -0.532 6.532 4 N -0.619 5.619 5 C 0.069 3.931 6 C 0.045 3.955 7 O -0.350 6.350 8 C 0.061 3.939 9 H 0.093 0.907 10 C 0.529 3.471 11 O -0.524 6.524 12 N -0.600 5.600 13 C 0.114 3.886 14 C -0.133 4.133 15 C -0.138 4.138 16 C 0.173 3.827 17 H 0.060 0.940 18 N -0.745 5.745 19 C -0.246 4.246 20 H 0.091 0.909 21 C 0.009 3.991 22 N -0.932 5.932 23 Si 0.882 3.118 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.276 1.276 27 C 0.090 3.910 28 C 0.085 3.915 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 -14.175 -14.455 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.302 3.698 3 O -0.407 6.407 4 N -0.355 5.355 5 C -0.054 4.054 6 C -0.033 4.033 7 O -0.267 6.267 8 C -0.002 4.002 9 H 0.111 0.889 10 C 0.314 3.686 11 O -0.399 6.399 12 N -0.335 5.335 13 C -0.007 4.007 14 C -0.172 4.172 15 C -0.178 4.178 16 C 0.062 3.938 17 H 0.078 0.922 18 N -0.388 5.388 19 C -0.376 4.376 20 H 0.109 0.891 21 C -0.187 4.187 22 N -0.579 5.579 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.034 4.034 28 C -0.038 4.038 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.131 0.869 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.298 -14.307 -14.438 21.597 hybrid contribution -0.534 1.269 -0.716 1.552 sum -7.832 -13.038 -15.154 21.471 Atomic orbital electron populations 1.21963 0.91304 1.04921 1.05141 1.20915 0.90804 0.82741 0.75372 1.90785 1.70497 1.30671 1.48785 1.48193 1.06287 1.06319 1.74737 1.22571 0.97763 0.84260 1.00788 1.23088 0.81294 1.01387 0.97532 1.88084 1.18366 1.27002 1.93284 1.22313 0.91554 0.86242 1.00044 0.88894 1.19776 0.87183 0.83793 0.77830 1.90694 1.77602 1.26170 1.45478 1.48004 1.06980 1.11819 1.66652 1.21665 0.78524 1.02627 0.97929 1.21938 1.00453 0.98460 0.96305 1.22251 0.98801 0.94289 1.02478 1.20452 0.92448 0.88074 0.92814 0.92191 1.42685 1.82370 1.08304 1.05405 1.19005 1.39037 0.97001 0.82560 0.89143 1.24644 1.01188 0.97135 0.95726 1.69698 1.53663 1.18874 1.15637 0.86598 0.78698 0.81451 0.82070 1.20855 1.21704 1.20236 1.22374 0.99383 0.83121 0.98498 1.22272 0.80583 1.02089 0.98848 0.88446 0.88622 0.89949 0.88059 0.90090 0.92034 0.86858 0.89211 0.91383 0.91665 0.91010 0.92446 0.90929 0.80473 0.92979 0.89643 0.90837 0.86875 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.44 36.01 0.34 -0.90 16 2 C 0.51 6.14 7.82 -10.98 -0.09 6.05 16 3 O -0.53 -9.01 16.57 5.56 0.09 -8.92 16 4 N -0.62 -6.56 3.02 -172.25 -0.52 -7.08 16 5 C 0.07 0.48 6.39 -3.53 -0.02 0.45 16 6 C 0.04 0.36 6.98 37.31 0.26 0.62 16 7 O -0.35 -4.47 9.95 -54.79 -0.55 -5.02 16 8 C 0.06 0.80 2.33 -27.71 -0.06 0.73 16 9 H 0.09 1.24 7.22 -51.93 -0.37 0.87 16 10 C 0.53 8.01 7.04 -10.98 -0.08 7.93 16 11 O -0.52 -9.40 15.98 -14.00 -0.22 -9.63 16 12 N -0.60 -8.55 2.97 -172.77 -0.51 -9.06 16 13 C 0.11 1.49 6.42 -3.71 -0.02 1.46 16 14 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 15 C -0.14 -2.25 5.47 -26.68 -0.15 -2.40 16 16 C 0.17 3.14 2.92 -67.81 -0.20 2.95 16 17 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 18 N -0.74 -16.92 4.93 -53.31 -0.26 -17.18 16 19 C -0.25 -6.75 10.41 -15.06 -0.16 -6.90 16 20 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 21 C 0.01 0.27 5.50 -17.44 -0.10 0.17 16 22 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 23 Si 0.88 22.10 27.73 -169.99 -4.71 17.39 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 27 C 0.09 1.36 4.90 -3.71 -0.02 1.34 16 28 C 0.09 1.05 5.56 -3.51 -0.02 1.03 16 29 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.34 6.28 -51.93 -0.33 0.02 16 32 H 0.10 0.39 5.68 -51.93 -0.30 0.09 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.19 7.03 -51.93 -0.37 0.82 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.36 8.20 5.67 -40.82 -0.23 7.97 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 44 H 0.09 1.29 4.56 -51.93 -0.24 1.06 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.11 1.56 4.97 -51.93 -0.26 1.30 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -36.16 366.68 -8.03 -44.19 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.17 Total: 7.27 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -0.47 Total: 10.62 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.52 Total: -61.43 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.68 Total: -23.56 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.16 -8.03 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000821322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.738 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds