Wall clock time and date at job start Fri Apr 10 2020 18:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 120.00098 * 2 1 4 4 N 1.34777 * 119.99462 * 179.97438 * 2 1 3 5 5 C 1.47157 * 120.98734 * 0.02562 * 4 2 1 6 6 C 1.53289 * 108.38472 * 230.51062 * 5 4 2 7 7 O 1.42963 * 109.26916 * 307.72307 * 6 5 4 8 8 C 1.42959 * 114.16918 * 62.49272 * 7 6 5 9 9 H 1.09002 * 109.50796 * 57.45763 * 8 7 6 10 10 C 1.50703 * 109.51124 * 177.55575 * 8 7 6 11 11 O 1.21281 * 119.99982 * 12.61241 * 10 8 7 12 12 N 1.34775 * 120.00057 * 192.61141 * 10 8 7 13 13 C 1.46920 * 120.63082 * 175.36666 * 12 10 8 14 14 C 1.53191 * 108.77647 * 233.63348 * 13 12 10 15 15 C 1.53048 * 109.31345 * 305.36259 * 14 13 12 16 16 C 1.53045 * 109.53463 * 61.36495 * 15 14 13 17 17 H 1.08999 * 109.51880 * 58.60277 * 16 15 14 18 18 N 1.46497 * 109.49596 * 178.68518 * 16 15 14 19 19 C 1.36939 * 120.00159 * 274.83694 * 18 16 15 20 20 H 1.08003 * 119.99504 * 0.02562 * 19 18 16 21 21 C 1.38802 * 120.00233 * 180.27603 * 19 18 16 22 22 N 1.31615 * 120.00230 * 179.72511 * 21 19 18 23 23 Si 1.86797 * 120.00187 * 359.72695 * 21 19 18 24 24 H 1.48501 * 109.47160 * 89.99597 * 23 21 19 25 25 H 1.48500 * 109.47674 * 210.00057 * 23 21 19 26 26 H 1.48505 * 109.47110 * 330.00041 * 23 21 19 27 27 C 1.46924 * 120.62918 * 355.39170 * 12 10 8 28 28 C 1.47154 * 120.98153 * 179.97438 * 4 2 1 29 29 H 1.09008 * 109.46703 * 270.00474 * 1 2 3 30 30 H 1.08993 * 109.46931 * 29.99860 * 1 2 3 31 31 H 1.08995 * 109.47333 * 150.00611 * 1 2 3 32 32 H 1.08996 * 109.67506 * 350.23403 * 5 4 2 33 33 H 1.08998 * 109.67578 * 110.78612 * 5 4 2 34 34 H 1.09005 * 109.51233 * 67.62205 * 6 5 4 35 35 H 1.09001 * 109.51107 * 187.77284 * 6 5 4 36 36 H 1.08994 * 109.58779 * 353.41908 * 13 12 10 37 37 H 1.08999 * 109.59009 * 113.84376 * 13 12 10 38 38 H 1.08999 * 109.49977 * 65.31533 * 14 13 12 39 39 H 1.09000 * 109.49963 * 185.38339 * 14 13 12 40 40 H 1.09003 * 109.45903 * 301.35074 * 15 14 13 41 41 H 1.08999 * 109.46113 * 181.38700 * 15 14 13 42 42 H 0.97000 * 119.99838 * 94.84137 * 18 16 15 43 43 H 0.97006 * 120.00324 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58811 * 6.58201 * 27 12 10 45 45 H 1.09002 * 109.58545 * 246.15318 * 27 12 10 46 46 H 1.09006 * 109.67762 * 9.76826 * 28 4 2 47 47 H 1.08998 * 109.68615 * 249.21671 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4670 -2.4541 0.0005 6 6 2.0410 -3.3254 1.1236 7 8 3.4631 -3.3884 0.9918 8 6 4.1197 -2.1253 1.1236 9 1 3.8716 -1.6851 2.0894 10 6 5.6109 -2.3208 1.0276 11 8 6.0601 -3.3780 0.6384 12 7 6.4453 -1.3208 1.3742 13 6 7.8997 -1.5285 1.3830 14 6 8.4471 -1.1252 2.7558 15 6 8.0152 0.3086 3.0716 16 6 6.4873 0.3840 3.1197 17 1 6.1124 -0.3043 3.8772 18 7 6.0754 1.7498 3.4530 19 6 6.0015 2.1423 4.7629 20 1 6.2473 1.4450 5.5502 21 6 5.6057 3.4346 5.0789 22 7 5.5294 3.8102 6.3380 23 14 5.1812 4.6408 3.7172 24 1 3.7338 4.5407 3.4006 25 1 5.4960 6.0218 4.1631 26 1 5.9763 4.3188 2.5050 27 6 5.9177 -0.0023 1.7511 28 6 3.6521 -1.1926 0.0000 29 1 -0.3633 0.0001 1.0278 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 0.4044 -2.2843 0.1742 33 1 1.6078 -2.9519 -0.9588 34 1 1.7845 -2.8899 2.0894 35 1 1.6240 -4.3301 1.0541 36 1 8.1198 -2.5796 1.1963 37 1 8.3614 -0.9136 0.6105 38 1 8.0541 -1.7996 3.5166 39 1 9.5355 -1.1837 2.7449 40 1 8.3876 0.9791 2.2971 41 1 8.4240 0.6068 4.0371 42 1 5.8550 2.3761 2.7458 43 1 5.2532 4.7135 6.5588 44 1 4.8301 -0.0464 1.8072 45 1 6.2177 0.7371 1.0085 46 1 4.0366 -0.1874 0.1733 47 1 4.0126 -1.5637 -0.9594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000821322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:44 Heat of formation + Delta-G solvation = -107.390862 kcal Electronic energy + Delta-G solvation = -29586.787371 eV Core-core repulsion = 25576.591482 eV Total energy + Delta-G solvation = -4010.195889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02856 -40.89442 -39.46458 -38.64287 -36.25305 -35.92794 -34.34944 -33.62029 -32.54546 -30.84939 -30.50078 -28.90769 -26.78926 -25.59262 -25.34737 -23.96152 -23.02067 -21.67622 -20.67208 -20.28732 -19.59297 -18.67597 -18.31883 -17.77920 -17.31731 -16.90927 -16.72761 -16.59659 -16.24486 -16.01104 -15.57562 -15.43784 -15.29591 -15.05084 -14.76917 -14.68556 -14.55094 -14.11808 -14.03000 -13.86587 -13.66142 -13.15778 -13.06437 -12.98759 -12.85320 -12.72936 -12.53780 -12.29057 -12.01379 -11.97859 -11.84879 -11.80220 -11.68943 -11.45113 -11.11409 -10.97339 -10.78981 -9.87101 -9.75617 -9.34651 -8.04392 -5.38752 1.20774 1.37360 1.41081 1.45596 1.48107 1.56549 1.80400 2.46187 2.63806 3.23012 3.26994 3.37524 3.56372 3.61120 3.68436 3.81113 3.87813 3.91589 4.03606 4.11525 4.19662 4.21815 4.25264 4.29264 4.38419 4.46001 4.53491 4.61180 4.64277 4.68951 4.73373 4.84856 4.85423 4.95285 5.04497 5.05620 5.17704 5.31162 5.36819 5.46866 5.74204 5.85785 6.14598 6.18826 6.23030 6.89898 7.01607 7.04469 7.78377 7.97219 9.16801 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.005055 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.443499 B = 5537.260285 C = 7646.625431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.503 3.497 3 O -0.593 6.593 4 N -0.618 5.618 5 C 0.068 3.932 6 C 0.036 3.964 7 O -0.373 6.373 8 C 0.069 3.931 9 H 0.086 0.914 10 C 0.527 3.473 11 O -0.553 6.553 12 N -0.597 5.597 13 C 0.113 3.887 14 C -0.121 4.121 15 C -0.130 4.130 16 C 0.167 3.833 17 H 0.041 0.959 18 N -0.747 5.747 19 C -0.227 4.227 20 H 0.058 0.942 21 C -0.056 4.056 22 N -0.981 5.981 23 Si 0.947 3.053 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.251 1.251 27 C 0.105 3.895 28 C 0.088 3.912 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.075 -15.339 -16.947 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.295 3.705 3 O -0.473 6.473 4 N -0.353 5.353 5 C -0.053 4.053 6 C -0.041 4.041 7 O -0.291 6.291 8 C 0.007 3.993 9 H 0.103 0.897 10 C 0.314 3.686 11 O -0.430 6.430 12 N -0.330 5.330 13 C -0.009 4.009 14 C -0.160 4.160 15 C -0.170 4.170 16 C 0.059 3.941 17 H 0.060 0.940 18 N -0.390 5.390 19 C -0.358 4.358 20 H 0.076 0.924 21 C -0.247 4.247 22 N -0.631 5.631 23 Si 0.774 3.226 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.175 1.175 27 C -0.019 4.019 28 C -0.036 4.036 29 H 0.129 0.871 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.161 0.839 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.439 -15.550 -16.971 24.516 hybrid contribution -0.179 1.454 0.112 1.470 sum -8.618 -14.096 -16.859 23.605 Atomic orbital electron populations 1.22013 0.87314 1.06728 1.06465 1.21856 0.92706 0.82031 0.73954 1.90751 1.71989 1.32825 1.51715 1.48354 1.05619 1.07609 1.73681 1.22872 0.99316 0.82178 1.00964 1.23453 0.78986 1.03547 0.98110 1.88057 1.21016 1.26617 1.93422 1.22132 0.90407 0.86865 0.99912 0.89657 1.20132 0.88109 0.83256 0.77083 1.90673 1.78272 1.27137 1.46953 1.48025 1.07667 1.11264 1.66084 1.21804 0.77709 1.03190 0.98153 1.21856 1.02129 0.95767 0.96251 1.22089 0.96742 0.96717 1.01499 1.20626 0.93953 0.85436 0.94126 0.94038 1.42633 1.82638 1.10145 1.03625 1.18933 1.36751 0.96175 0.83891 0.92365 1.25375 1.02286 0.99182 0.97904 1.69862 1.55983 1.19277 1.18006 0.85539 0.78399 0.78596 0.80021 1.21066 1.22164 1.17541 1.22117 0.99233 0.83852 0.96707 1.22090 0.82232 1.00760 0.98487 0.87133 0.88756 0.86269 0.84248 0.88821 0.92022 0.83861 0.89075 0.89276 0.92591 0.88274 0.91449 0.93465 0.80077 0.93311 0.89724 0.89519 0.88571 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.44 71.24 0.67 -1.19 16 2 C 0.50 11.31 7.82 87.66 0.69 11.99 16 3 O -0.59 -20.09 16.57 -3.01 -0.05 -20.14 16 4 N -0.62 -11.97 3.02 -817.28 -2.47 -14.44 16 5 C 0.07 0.70 6.39 86.35 0.55 1.25 16 6 C 0.04 0.48 6.98 72.08 0.50 0.98 16 7 O -0.37 -9.04 9.95 -130.28 -1.30 -10.33 16 8 C 0.07 1.78 2.33 29.96 0.07 1.85 16 9 H 0.09 2.29 7.22 -2.39 -0.02 2.27 16 10 C 0.53 15.66 7.04 87.66 0.62 16.28 16 11 O -0.55 -19.47 15.98 15.67 0.25 -19.22 16 12 N -0.60 -16.41 2.97 -818.92 -2.43 -18.84 16 13 C 0.11 2.71 6.42 86.36 0.55 3.26 16 14 C -0.12 -3.02 6.08 30.67 0.19 -2.84 16 15 C -0.13 -4.17 5.47 30.63 0.17 -4.00 16 16 C 0.17 6.10 2.92 45.07 0.13 6.23 16 17 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 18 N -0.75 -33.90 4.93 -322.57 -1.59 -35.49 16 19 C -0.23 -12.69 10.41 84.03 0.87 -11.82 16 20 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 21 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 22 N -0.98 -62.61 13.97 21.65 0.30 -62.31 16 23 Si 0.95 45.96 27.73 68.60 1.90 47.87 16 24 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 27 C 0.10 3.09 4.90 86.36 0.42 3.51 16 28 C 0.09 2.11 5.56 86.37 0.48 2.59 16 29 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.12 0.41 6.28 -2.39 -0.02 0.40 16 32 H 0.14 0.37 5.68 -2.39 -0.01 0.35 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 2.25 7.03 -2.39 -0.02 2.23 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.37 16.13 5.67 -92.71 -0.53 15.61 16 43 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 44 H 0.08 2.55 4.56 -2.39 -0.01 2.54 16 45 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.10 2.64 4.97 -2.38 -0.01 2.63 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -81.97 366.68 1.41 -80.56 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.41 Total: 27.03 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 6.39 Total: 25.32 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -6.19 Total: -131.08 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -1.10 Total: -49.69 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.87 kcal Total: -81.97 1.41 -80.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000821322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.830 kcal (2) G-P(sol) polarization free energy of solvation -81.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds