Wall clock time and date at job start Fri Apr 10 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21278 * 120.00187 * 2 1 4 4 N 1.34777 * 119.99590 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98664 * 355.29456 * 4 2 1 6 6 C 1.53293 * 108.38480 * 129.43901 * 5 4 2 7 7 O 1.42959 * 109.22478 * 52.30546 * 6 5 4 8 8 C 1.42968 * 114.16344 * 297.41945 * 7 6 5 9 9 H 1.09001 * 109.54941 * 302.62650 * 8 7 6 10 10 C 1.50699 * 109.50854 * 182.50440 * 8 7 6 11 11 O 1.21287 * 120.00346 * 355.25266 * 10 8 7 12 12 N 1.34779 * 119.99710 * 175.25531 * 10 8 7 13 13 C 1.46923 * 120.63262 * 0.02562 * 12 10 8 14 14 C 1.53187 * 108.77992 * 233.59043 * 13 12 10 15 15 C 1.53040 * 109.31100 * 305.36925 * 14 13 12 16 16 C 1.53039 * 109.53948 * 61.36442 * 15 14 13 17 17 H 1.08994 * 109.52506 * 58.60416 * 16 15 14 18 18 N 1.46500 * 109.49505 * 178.68336 * 16 15 14 19 19 C 1.36936 * 119.99995 * 274.83667 * 18 16 15 20 20 H 1.07997 * 120.00243 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00037 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00134 * 180.27344 * 21 19 18 24 24 H 1.48498 * 109.47437 * 179.72365 * 23 21 19 25 25 H 1.48503 * 109.47438 * 299.72645 * 23 21 19 26 26 H 1.48506 * 109.47253 * 59.72520 * 23 21 19 27 27 C 1.46924 * 120.62650 * 180.02562 * 12 10 8 28 28 C 1.47155 * 120.98055 * 175.26590 * 4 2 1 29 29 H 1.09002 * 109.47455 * 185.41006 * 1 2 3 30 30 H 1.08999 * 109.46586 * 305.41177 * 1 2 3 31 31 H 1.08997 * 109.46710 * 65.40533 * 1 2 3 32 32 H 1.08992 * 109.68076 * 249.16775 * 5 4 2 33 33 H 1.09002 * 109.67620 * 9.68185 * 5 4 2 34 34 H 1.09006 * 109.50880 * 172.22893 * 6 5 4 35 35 H 1.09005 * 109.51462 * 292.32381 * 6 5 4 36 36 H 1.09007 * 109.58339 * 353.38013 * 13 12 10 37 37 H 1.09000 * 109.58093 * 113.65983 * 13 12 10 38 38 H 1.09003 * 109.49745 * 65.31357 * 14 13 12 39 39 H 1.08996 * 109.50194 * 185.41340 * 14 13 12 40 40 H 1.09000 * 109.46120 * 301.33805 * 15 14 13 41 41 H 1.09004 * 109.45965 * 181.38669 * 15 14 13 42 42 H 0.97005 * 120.00274 * 94.84131 * 18 16 15 43 43 H 0.97001 * 120.00204 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.59441 * 6.62018 * 27 12 10 45 45 H 1.09000 * 109.70235 * 246.26080 * 27 12 10 46 46 H 1.09004 * 109.67588 * 110.83623 * 28 4 2 47 47 H 1.09003 * 109.71324 * 350.30608 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4707 -2.4519 0.1046 6 6 1.9643 -3.3696 -1.0197 7 8 3.3923 -3.4291 -0.9861 8 6 4.0359 -2.1737 -1.2177 9 1 3.7189 -1.7735 -2.1807 10 6 5.5304 -2.3673 -1.2204 11 8 6.0018 -3.4533 -0.9567 12 7 6.3433 -1.3336 -1.5159 13 6 5.7873 -0.0121 -1.8369 14 6 6.3567 0.4490 -3.1822 15 6 7.8855 0.4070 -3.1258 16 6 8.3491 -1.0292 -2.8718 17 1 7.9776 -1.6776 -3.6653 18 7 9.8132 -1.0735 -2.8493 19 6 10.5125 -1.1979 -4.0201 20 1 9.9847 -1.2628 -4.9600 21 6 11.8998 -1.2405 -3.9987 22 7 12.5431 -1.1608 -2.8532 23 14 12.8540 -1.4024 -5.5964 24 1 14.3099 -1.4181 -5.3041 25 1 12.4718 -2.6666 -6.2754 26 1 12.5390 -0.2512 -6.4800 27 6 7.8022 -1.5071 -1.5232 28 6 3.6485 -1.1947 -0.1036 29 1 -0.3634 -1.0231 0.0969 30 1 -0.3632 0.5955 0.8376 31 1 -0.3632 0.4277 -0.9344 32 1 1.6804 -2.9099 1.0711 33 1 0.3981 -2.2878 0.0010 34 1 1.5548 -4.3700 -0.8792 35 1 1.6381 -2.9746 -1.9819 36 1 4.7013 -0.0789 -1.9033 37 1 6.0627 0.6990 -1.0581 38 1 6.0035 -0.2131 -3.9728 39 1 6.0279 1.4679 -3.3864 40 1 8.2369 1.0502 -2.3190 41 1 8.2936 0.7581 -4.0736 42 1 10.2874 -1.0149 -2.0051 43 1 13.5126 -1.1902 -2.8383 44 1 8.0459 -2.5601 -1.3827 45 1 8.2462 -0.9190 -0.7200 46 1 4.0773 -1.5263 0.8421 47 1 4.0187 -0.1984 -0.3452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000821327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:47 Heat of formation + Delta-G solvation = -78.623680 kcal Electronic energy + Delta-G solvation = -28930.240877 eV Core-core repulsion = 24921.292427 eV Total energy + Delta-G solvation = -4008.948451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11053 -39.85700 -38.52386 -37.19171 -35.22840 -34.61520 -32.81579 -31.95779 -31.20345 -30.31602 -28.81776 -27.70461 -25.70852 -24.51307 -23.85732 -22.81234 -22.07267 -20.21959 -19.80812 -18.98232 -17.72416 -17.58653 -17.20784 -16.85423 -16.48303 -15.98930 -15.61421 -15.45635 -14.83700 -14.60854 -14.42802 -14.20948 -14.06975 -13.91667 -13.64323 -13.50791 -13.44046 -12.99934 -12.84480 -12.66008 -12.53553 -12.24966 -12.13620 -11.94054 -11.32809 -11.08798 -10.94814 -10.89034 -10.71553 -10.58142 -10.42420 -10.35263 -10.24416 -10.10199 -9.74768 -9.59539 -9.05759 -8.90714 -8.46589 -6.98999 -5.77170 -3.06948 2.13718 2.29823 2.59251 2.67377 3.44557 3.48887 3.49871 3.59023 4.03490 4.18153 4.29343 4.36560 4.42334 4.58054 4.59377 4.69330 4.84040 4.87081 4.93512 5.01418 5.08539 5.13328 5.23306 5.29855 5.38142 5.44394 5.52823 5.54143 5.64362 5.74546 5.79784 5.81041 6.01906 6.14202 6.21615 6.38083 6.50540 6.56497 6.71843 6.83638 6.87274 7.03906 7.45821 7.66516 7.69192 8.19801 8.40739 9.51849 10.06796 10.41940 11.45227 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.002723 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.197654 B =10280.193677 C =10872.696729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.514 3.486 3 O -0.540 6.540 4 N -0.617 5.617 5 C 0.064 3.936 6 C 0.045 3.955 7 O -0.347 6.347 8 C 0.064 3.936 9 H 0.088 0.912 10 C 0.521 3.479 11 O -0.515 6.515 12 N -0.600 5.600 13 C 0.100 3.900 14 C -0.133 4.133 15 C -0.137 4.137 16 C 0.168 3.832 17 H 0.051 0.949 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.286 1.286 27 C 0.107 3.893 28 C 0.081 3.919 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.961 0.848 6.071 29.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.304 3.696 3 O -0.416 6.416 4 N -0.353 5.353 5 C -0.059 4.059 6 C -0.033 4.033 7 O -0.264 6.264 8 C 0.002 3.998 9 H 0.106 0.894 10 C 0.306 3.694 11 O -0.389 6.389 12 N -0.335 5.335 13 C -0.023 4.023 14 C -0.172 4.172 15 C -0.178 4.178 16 C 0.058 3.942 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.213 1.213 27 C -0.015 4.015 28 C -0.042 4.042 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -28.186 0.621 6.092 28.844 hybrid contribution 0.497 0.213 -0.680 0.869 sum -27.689 0.834 5.412 28.225 Atomic orbital electron populations 1.22029 0.91401 1.04624 1.05670 1.20882 0.90746 0.82751 0.75268 1.90749 1.70550 1.30779 1.49544 1.48240 1.06848 1.06466 1.73752 1.22695 0.98164 0.84058 1.00934 1.23083 0.81577 1.01169 0.97471 1.88145 1.17872 1.27843 1.92554 1.22268 0.92326 0.86139 0.99093 0.89393 1.19760 0.87053 0.84497 0.78058 1.90746 1.76256 1.24648 1.47235 1.48045 1.07412 1.09714 1.68313 1.22004 0.97866 0.84154 0.98271 1.21934 0.98100 1.01107 0.96031 1.22293 0.92349 1.00551 1.02608 1.20470 0.86095 0.93612 0.94072 0.93147 1.42296 0.98670 1.87856 1.07329 1.19154 0.88873 1.42613 0.86445 0.91207 1.24749 0.96435 1.02756 0.96841 1.69650 1.07463 1.57138 1.23728 0.86259 0.79082 0.77908 0.82868 1.21671 1.21232 1.21267 1.22049 0.76690 1.03607 0.99132 1.22418 0.80499 1.01796 0.99486 0.89890 0.88497 0.88395 0.89868 0.87752 0.86810 0.92250 0.90362 0.90709 0.91831 0.91111 0.92327 0.91440 0.78153 0.93388 0.88734 0.91330 0.89839 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 10.12 36.01 0.36 -0.39 16 2 C 0.51 4.56 7.81 -10.98 -0.09 4.48 16 3 O -0.54 -7.10 16.59 5.56 0.09 -7.01 16 4 N -0.62 -5.11 3.02 -172.28 -0.52 -5.63 16 5 C 0.06 0.33 6.55 -3.53 -0.02 0.31 16 6 C 0.04 0.29 6.98 37.31 0.26 0.55 16 7 O -0.35 -4.16 9.92 -55.07 -0.55 -4.70 16 8 C 0.06 0.75 2.35 -27.73 -0.07 0.69 16 9 H 0.09 0.91 7.44 -51.93 -0.39 0.52 16 10 C 0.52 8.15 7.12 -10.98 -0.08 8.07 16 11 O -0.51 -10.26 15.92 -14.28 -0.23 -10.48 16 12 N -0.60 -8.93 2.97 -172.78 -0.51 -9.44 16 13 C 0.10 1.20 5.13 -3.71 -0.02 1.18 16 14 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 15 C -0.14 -2.35 5.47 -26.69 -0.15 -2.49 16 16 C 0.17 3.36 2.92 -67.82 -0.20 3.16 16 17 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 18 N -0.72 -18.00 5.12 -53.32 -0.27 -18.28 16 19 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.11 1.92 5.90 -3.72 -0.02 1.90 16 28 C 0.08 0.84 5.45 -3.54 -0.02 0.82 16 29 H 0.08 0.14 5.16 -51.93 -0.27 -0.13 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.20 5.15 -51.93 -0.27 -0.07 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.79 4.54 -51.93 -0.24 0.56 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 1.91 7.01 -51.93 -0.36 1.54 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.12 1.25 4.50 -51.93 -0.23 1.02 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -36.17 368.32 -8.29 -44.45 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.11 Total: 6.36 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -0.44 Total: 9.16 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.58 Total: -60.81 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.68 Total: -22.20 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.17 -8.29 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000821327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.169 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds