Wall clock time and date at job start Fri Apr 10 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21278 * 120.00187 * 2 1 4 4 N 1.34777 * 119.99590 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98664 * 355.29456 * 4 2 1 6 6 C 1.53293 * 108.38480 * 129.43901 * 5 4 2 7 7 O 1.42959 * 109.22478 * 52.30546 * 6 5 4 8 8 C 1.42968 * 114.16344 * 297.41945 * 7 6 5 9 9 H 1.09001 * 109.54941 * 302.62650 * 8 7 6 10 10 C 1.50699 * 109.50854 * 182.50440 * 8 7 6 11 11 O 1.21287 * 120.00346 * 355.25266 * 10 8 7 12 12 N 1.34779 * 119.99710 * 175.25531 * 10 8 7 13 13 C 1.46923 * 120.63262 * 0.02562 * 12 10 8 14 14 C 1.53187 * 108.77992 * 233.59043 * 13 12 10 15 15 C 1.53040 * 109.31100 * 305.36925 * 14 13 12 16 16 C 1.53039 * 109.53948 * 61.36442 * 15 14 13 17 17 H 1.08994 * 109.52506 * 58.60416 * 16 15 14 18 18 N 1.46500 * 109.49505 * 178.68336 * 16 15 14 19 19 C 1.36936 * 119.99995 * 274.83667 * 18 16 15 20 20 H 1.07997 * 120.00243 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00037 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00134 * 180.27344 * 21 19 18 24 24 H 1.48498 * 109.47437 * 179.72365 * 23 21 19 25 25 H 1.48503 * 109.47438 * 299.72645 * 23 21 19 26 26 H 1.48506 * 109.47253 * 59.72520 * 23 21 19 27 27 C 1.46924 * 120.62650 * 180.02562 * 12 10 8 28 28 C 1.47155 * 120.98055 * 175.26590 * 4 2 1 29 29 H 1.09002 * 109.47455 * 185.41006 * 1 2 3 30 30 H 1.08999 * 109.46586 * 305.41177 * 1 2 3 31 31 H 1.08997 * 109.46710 * 65.40533 * 1 2 3 32 32 H 1.08992 * 109.68076 * 249.16775 * 5 4 2 33 33 H 1.09002 * 109.67620 * 9.68185 * 5 4 2 34 34 H 1.09006 * 109.50880 * 172.22893 * 6 5 4 35 35 H 1.09005 * 109.51462 * 292.32381 * 6 5 4 36 36 H 1.09007 * 109.58339 * 353.38013 * 13 12 10 37 37 H 1.09000 * 109.58093 * 113.65983 * 13 12 10 38 38 H 1.09003 * 109.49745 * 65.31357 * 14 13 12 39 39 H 1.08996 * 109.50194 * 185.41340 * 14 13 12 40 40 H 1.09000 * 109.46120 * 301.33805 * 15 14 13 41 41 H 1.09004 * 109.45965 * 181.38669 * 15 14 13 42 42 H 0.97005 * 120.00274 * 94.84131 * 18 16 15 43 43 H 0.97001 * 120.00204 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.59441 * 6.62018 * 27 12 10 45 45 H 1.09000 * 109.70235 * 246.26080 * 27 12 10 46 46 H 1.09004 * 109.67588 * 110.83623 * 28 4 2 47 47 H 1.09003 * 109.71324 * 350.30608 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4707 -2.4519 0.1046 6 6 1.9643 -3.3696 -1.0197 7 8 3.3923 -3.4291 -0.9861 8 6 4.0359 -2.1737 -1.2177 9 1 3.7189 -1.7735 -2.1807 10 6 5.5304 -2.3673 -1.2204 11 8 6.0018 -3.4533 -0.9567 12 7 6.3433 -1.3336 -1.5159 13 6 5.7873 -0.0121 -1.8369 14 6 6.3567 0.4490 -3.1822 15 6 7.8855 0.4070 -3.1258 16 6 8.3491 -1.0292 -2.8718 17 1 7.9776 -1.6776 -3.6653 18 7 9.8132 -1.0735 -2.8493 19 6 10.5125 -1.1979 -4.0201 20 1 9.9847 -1.2628 -4.9600 21 6 11.8998 -1.2405 -3.9987 22 7 12.5431 -1.1608 -2.8532 23 14 12.8540 -1.4024 -5.5964 24 1 14.3099 -1.4181 -5.3041 25 1 12.4718 -2.6666 -6.2754 26 1 12.5390 -0.2512 -6.4800 27 6 7.8022 -1.5071 -1.5232 28 6 3.6485 -1.1947 -0.1036 29 1 -0.3634 -1.0231 0.0969 30 1 -0.3632 0.5955 0.8376 31 1 -0.3632 0.4277 -0.9344 32 1 1.6804 -2.9099 1.0711 33 1 0.3981 -2.2878 0.0010 34 1 1.5548 -4.3700 -0.8792 35 1 1.6381 -2.9746 -1.9819 36 1 4.7013 -0.0789 -1.9033 37 1 6.0627 0.6990 -1.0581 38 1 6.0035 -0.2131 -3.9728 39 1 6.0279 1.4679 -3.3864 40 1 8.2369 1.0502 -2.3190 41 1 8.2936 0.7581 -4.0736 42 1 10.2874 -1.0149 -2.0051 43 1 13.5126 -1.1902 -2.8383 44 1 8.0459 -2.5601 -1.3827 45 1 8.2462 -0.9190 -0.7200 46 1 4.0773 -1.5263 0.8421 47 1 4.0187 -0.1984 -0.3452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000821327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:47 Heat of formation + Delta-G solvation = -105.206890 kcal Electronic energy + Delta-G solvation = -28931.393612 eV Core-core repulsion = 24921.292427 eV Total energy + Delta-G solvation = -4010.101185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.01765 -40.85864 -39.42305 -38.53066 -36.36494 -35.90614 -34.20269 -33.05142 -32.78960 -30.80306 -30.22325 -28.73302 -26.80405 -25.88501 -25.21600 -23.62479 -23.46412 -21.60102 -20.64691 -20.07290 -19.19089 -18.64596 -18.33740 -17.77238 -17.31509 -16.94790 -16.66556 -16.46527 -16.21782 -15.85735 -15.61728 -15.41752 -15.20594 -15.02992 -14.77684 -14.65356 -14.53007 -14.25810 -13.90449 -13.75120 -13.58439 -13.01811 -12.94981 -12.86482 -12.80033 -12.56525 -12.35954 -12.22927 -12.15643 -11.95227 -11.87570 -11.72831 -11.65141 -11.41753 -11.01303 -10.92205 -10.75644 -9.83058 -9.73655 -9.05435 -7.96577 -5.26479 1.28064 1.44771 1.48614 1.50223 1.54982 1.57382 1.81364 2.54138 2.73331 3.29519 3.36465 3.40216 3.58881 3.68482 3.75690 3.92634 3.97354 3.99326 3.99918 4.07684 4.17967 4.23447 4.27122 4.31653 4.45310 4.56907 4.62644 4.66727 4.68400 4.70743 4.77430 4.80731 4.88730 5.00707 5.09675 5.12824 5.20622 5.32509 5.35291 5.47025 5.55141 5.91144 6.24592 6.25826 6.27371 6.95948 7.04181 7.30704 8.02873 8.27579 9.26546 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.002723 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.197654 B =10280.193677 C =10872.696729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.590 6.590 4 N -0.616 5.616 5 C 0.064 3.936 6 C 0.036 3.964 7 O -0.381 6.381 8 C 0.079 3.921 9 H 0.107 0.893 10 C 0.515 3.485 11 O -0.567 6.567 12 N -0.596 5.596 13 C 0.100 3.900 14 C -0.123 4.123 15 C -0.128 4.128 16 C 0.168 3.832 17 H 0.034 0.966 18 N -0.735 5.735 19 C -0.241 4.241 20 H 0.074 0.926 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.295 1.295 25 H -0.280 1.280 26 H -0.275 1.275 27 C 0.119 3.881 28 C 0.085 3.915 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.718 1.551 5.358 33.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.300 3.700 3 O -0.470 6.470 4 N -0.351 5.351 5 C -0.057 4.057 6 C -0.040 4.040 7 O -0.299 6.299 8 C 0.017 3.983 9 H 0.125 0.875 10 C 0.303 3.697 11 O -0.445 6.445 12 N -0.330 5.330 13 C -0.021 4.021 14 C -0.162 4.162 15 C -0.168 4.168 16 C 0.059 3.941 17 H 0.052 0.948 18 N -0.375 5.375 19 C -0.372 4.372 20 H 0.092 0.908 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.221 1.221 25 H -0.207 1.207 26 H -0.201 1.201 27 C -0.004 4.004 28 C -0.039 4.039 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -32.044 1.331 5.360 32.516 hybrid contribution 1.553 -0.064 -0.423 1.611 sum -30.490 1.267 4.937 30.913 Atomic orbital electron populations 1.22077 0.87440 1.06828 1.06496 1.21765 0.92521 0.81878 0.73825 1.90726 1.71863 1.32534 1.51879 1.48363 1.05830 1.07739 1.73132 1.22933 1.00059 0.82232 1.00470 1.23459 0.78711 1.03071 0.98794 1.88109 1.21036 1.27957 1.92844 1.22073 0.89078 0.86749 1.00414 0.87513 1.20589 0.88982 0.83558 0.76608 1.90713 1.77522 1.26711 1.49544 1.48072 1.05993 1.11050 1.67888 1.22232 0.99243 0.82557 0.98095 1.21886 0.94493 1.03168 0.96623 1.22079 0.95593 0.97609 1.01514 1.20611 0.83543 0.95363 0.94605 0.94817 1.42469 1.00736 1.88132 1.06140 1.19510 0.89370 1.40956 0.87410 0.90825 1.25569 0.97495 1.03567 1.00010 1.69810 1.07239 1.59056 1.25788 0.85214 0.77188 0.78179 0.79190 1.22088 1.20658 1.20105 1.21637 0.79047 1.01681 0.98056 1.22187 0.82485 1.00869 0.98333 0.86886 0.87946 0.87244 0.89786 0.83625 0.84617 0.90804 0.87681 0.89476 0.91565 0.88000 0.92397 0.93183 0.79429 0.93944 0.91724 0.90840 0.91141 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.12 71.24 0.72 -0.02 16 2 C 0.51 7.62 7.81 87.66 0.68 8.30 16 3 O -0.59 -14.58 16.59 -3.02 -0.05 -14.63 16 4 N -0.62 -8.52 3.02 -817.35 -2.47 -10.99 16 5 C 0.06 0.43 6.55 86.35 0.57 1.00 16 6 C 0.04 0.36 6.98 72.08 0.50 0.86 16 7 O -0.38 -8.64 9.92 -130.01 -1.29 -9.93 16 8 C 0.08 1.75 2.35 29.94 0.07 1.82 16 9 H 0.11 1.94 7.44 -2.39 -0.02 1.92 16 10 C 0.52 16.29 7.12 87.66 0.62 16.92 16 11 O -0.57 -23.61 15.92 15.91 0.25 -23.36 16 12 N -0.60 -17.75 2.97 -818.95 -2.43 -20.19 16 13 C 0.10 2.21 5.13 86.36 0.44 2.65 16 14 C -0.12 -2.92 6.08 30.67 0.19 -2.73 16 15 C -0.13 -4.31 5.47 30.62 0.17 -4.14 16 16 C 0.17 6.88 2.92 45.06 0.13 7.02 16 17 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 18 N -0.73 -38.03 5.12 -322.62 -1.65 -39.69 16 19 C -0.24 -13.64 9.93 84.03 0.83 -12.80 16 20 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 22 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 23 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 C 0.12 4.43 5.90 86.36 0.51 4.94 16 28 C 0.09 1.66 5.45 86.35 0.47 2.13 16 29 H 0.11 -0.25 5.16 -2.39 -0.01 -0.26 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.15 -0.26 5.15 -2.39 -0.01 -0.28 16 34 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.11 1.84 4.54 -2.38 -0.01 1.83 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.37 20.69 7.80 -92.70 -0.72 19.96 16 43 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.06 2.79 7.01 -2.39 -0.02 2.77 16 45 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.11 2.24 4.50 -2.39 -0.01 2.23 16 Total: -1.00 -83.29 368.32 1.32 -81.97 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.27 Total: 25.75 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 6.38 Total: 22.08 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -6.27 Total: -130.84 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -1.09 Total: -47.92 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -83.29 1.32 -81.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000821327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.239 kcal (2) G-P(sol) polarization free energy of solvation -83.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds