Wall clock time and date at job start Fri Apr 10 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 120.00221 * 2 1 4 4 N 1.34777 * 119.99870 * 179.97438 * 2 1 3 5 5 C 1.47153 * 120.98180 * 6.29137 * 4 2 1 6 6 C 1.53292 * 108.38401 * 230.55531 * 5 4 2 7 7 O 1.42965 * 109.22138 * 307.69730 * 6 5 4 8 8 C 1.42959 * 114.16937 * 62.58286 * 7 6 5 9 9 C 1.47149 * 120.98378 * 186.30817 * 4 2 1 10 10 H 1.09002 * 109.68101 * 249.20822 * 9 4 2 11 11 C 1.50704 * 109.67865 * 9.72316 * 9 4 2 12 12 O 1.21275 * 120.00321 * 55.24229 * 11 9 4 13 13 N 1.34779 * 119.99636 * 235.22868 * 11 9 4 14 14 C 1.46920 * 120.63308 * 354.10411 * 13 11 9 15 15 C 1.53193 * 108.77280 * 233.58169 * 14 13 11 16 16 C 1.53042 * 109.31068 * 305.36151 * 15 14 13 17 17 C 1.53352 * 109.60622 * 61.37910 * 16 15 14 18 18 H 1.09000 * 109.47666 * 58.54796 * 17 16 15 19 19 N 1.46505 * 109.68314 * 178.74585 * 17 16 15 20 20 C 1.36932 * 119.99856 * 274.74905 * 19 17 16 21 21 H 1.08003 * 120.00274 * 0.02562 * 20 19 17 22 22 C 1.38808 * 120.00319 * 180.02562 * 20 19 17 23 23 N 1.31622 * 120.00614 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99648 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46690 * 90.00129 * 24 22 20 26 26 H 1.48498 * 109.46926 * 209.99782 * 24 22 20 27 27 H 1.48498 * 109.47167 * 330.00151 * 24 22 20 28 28 C 1.46929 * 120.62481 * 174.07174 * 13 11 9 29 29 H 1.08995 * 109.47604 * 270.01039 * 1 2 3 30 30 H 1.09005 * 109.46711 * 30.00733 * 1 2 3 31 31 H 1.08993 * 109.47155 * 150.00609 * 1 2 3 32 32 H 1.09006 * 109.68110 * 350.27689 * 5 4 2 33 33 H 1.08989 * 109.68252 * 110.79313 * 5 4 2 34 34 H 1.09002 * 109.51800 * 67.61701 * 6 5 4 35 35 H 1.08998 * 109.51269 * 187.77335 * 6 5 4 36 36 H 1.09003 * 109.51441 * 177.49670 * 8 7 6 37 37 H 1.08997 * 109.51386 * 57.34164 * 8 7 6 38 38 H 1.09001 * 109.58832 * 353.36523 * 14 13 11 39 39 H 1.09006 * 109.59023 * 113.79558 * 14 13 11 40 40 H 1.08993 * 109.49858 * 65.31829 * 15 14 13 41 41 H 1.09000 * 109.49559 * 185.41384 * 15 14 13 42 42 H 1.09010 * 109.45774 * 181.38480 * 16 15 14 43 43 H 1.08997 * 109.46413 * 301.35460 * 16 15 14 44 44 H 0.96998 * 120.00144 * 94.74635 * 19 17 16 45 45 H 0.96991 * 120.00101 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.58835 * 246.20500 * 28 13 11 47 47 H 1.08998 * 109.59093 * 6.49231 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4736 -2.4503 -0.1372 6 6 1.9403 -3.3826 0.9866 7 8 3.3687 -3.4418 0.9863 8 6 4.0065 -2.1897 1.2495 9 6 3.6455 -1.1963 0.1391 10 1 4.0970 -1.5150 -0.8004 11 6 4.1481 0.1769 0.5037 12 8 3.7058 0.7454 1.4794 13 7 5.0894 0.7732 -0.2546 14 6 5.7279 0.0490 -1.3621 15 6 7.2480 0.1176 -1.1846 16 6 7.6774 1.5813 -1.0603 17 6 7.0183 2.2078 0.1745 18 1 7.3061 1.6472 1.0639 19 7 7.4518 3.6005 0.3121 20 6 8.6222 3.8924 0.9603 21 1 9.2259 3.0959 1.3697 22 6 9.0327 5.2119 1.0912 23 7 10.1574 5.4925 1.7146 24 14 7.9889 6.5894 0.3824 25 1 7.0169 7.0506 1.4059 26 1 8.8652 7.7210 -0.0134 27 1 7.2548 6.0916 -0.8086 28 6 5.4960 2.1600 0.0102 29 1 -0.3634 0.0002 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5137 32 1 0.3988 -2.2875 -0.0565 33 1 1.7058 -2.8955 -1.1045 34 1 1.5921 -2.9995 1.9458 35 1 1.5345 -4.3810 0.8234 36 1 5.0872 -2.3299 1.2754 37 1 3.6657 -1.8023 2.2096 38 1 5.4055 -0.9922 -1.3519 39 1 5.4494 0.5107 -2.3094 40 1 7.5337 -0.4233 -0.2826 41 1 7.7358 -0.3324 -2.0492 42 1 8.7615 1.6342 -0.9585 43 1 7.3694 2.1272 -1.9519 44 1 6.9099 4.3158 -0.0559 45 1 10.4440 6.4146 1.8064 46 1 5.1986 2.7939 -0.8252 47 1 5.0186 2.5126 0.9245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000966496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:55 Heat of formation + Delta-G solvation = -97.053221 kcal Electronic energy + Delta-G solvation = -29651.181326 eV Core-core repulsion = 25641.433710 eV Total energy + Delta-G solvation = -4009.747616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24379 -40.43211 -39.35756 -38.52620 -36.35770 -35.91495 -34.07007 -33.08464 -32.94252 -30.79072 -30.59912 -28.60216 -26.80161 -25.92065 -24.96753 -23.42330 -23.25959 -22.00628 -21.00119 -19.80727 -19.52742 -18.71516 -18.08249 -17.82760 -16.97613 -16.83701 -16.61721 -16.43663 -16.07911 -16.00343 -15.59313 -15.47149 -15.28109 -15.13437 -14.74101 -14.69868 -14.48786 -14.22771 -14.02785 -13.85178 -13.28665 -13.14637 -13.08429 -13.00765 -12.86674 -12.57728 -12.42989 -12.24205 -12.02013 -11.94222 -11.85439 -11.77374 -11.72252 -11.37103 -10.99637 -10.87057 -10.54844 -9.77549 -9.59881 -9.33605 -8.06869 -5.41258 1.33156 1.33862 1.37625 1.43807 1.56127 1.84820 2.07267 2.44082 2.74104 3.23590 3.31594 3.47070 3.54044 3.65128 3.77803 3.91824 3.98180 3.99303 4.06981 4.12092 4.16147 4.23346 4.29080 4.35607 4.46037 4.51243 4.58822 4.61597 4.70515 4.76490 4.79431 4.82146 4.90690 5.01082 5.03176 5.11249 5.22485 5.35222 5.45014 5.49587 5.72160 5.95840 6.16650 6.24050 6.43132 7.00767 7.04609 7.28262 7.75809 7.95586 9.14516 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.003339 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.807198 B = 8382.684484 C = 9040.321956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.491 3.509 3 O -0.564 6.564 4 N -0.612 5.612 5 C 0.070 3.930 6 C 0.035 3.965 7 O -0.377 6.377 8 C 0.069 3.931 9 C 0.092 3.908 10 H 0.128 0.872 11 C 0.531 3.469 12 O -0.573 6.573 13 N -0.604 5.604 14 C 0.102 3.898 15 C -0.122 4.122 16 C -0.129 4.129 17 C 0.171 3.829 18 H 0.033 0.967 19 N -0.750 5.750 20 C -0.229 4.229 21 H 0.057 0.943 22 C -0.060 4.060 23 N -0.982 5.982 24 Si 0.952 3.048 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.253 1.253 28 C 0.128 3.872 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.364 0.636 45 H 0.259 0.741 46 H 0.063 0.937 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.367 -25.216 -10.479 35.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.282 3.718 3 O -0.442 6.442 4 N -0.350 5.350 5 C -0.050 4.050 6 C -0.042 4.042 7 O -0.295 6.295 8 C -0.009 4.009 9 C -0.015 4.015 10 H 0.145 0.855 11 C 0.320 3.680 12 O -0.452 6.452 13 N -0.338 5.338 14 C -0.019 4.019 15 C -0.161 4.161 16 C -0.169 4.169 17 C 0.062 3.938 18 H 0.051 0.949 19 N -0.394 5.394 20 C -0.360 4.360 21 H 0.075 0.925 22 C -0.252 4.252 23 N -0.632 5.632 24 Si 0.779 3.221 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.177 1.177 28 C 0.004 3.996 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.197 0.803 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.025 -24.571 -9.882 35.093 hybrid contribution 0.038 1.986 0.275 2.005 sum -22.987 -22.585 -9.607 33.627 Atomic orbital electron populations 1.21956 0.87491 1.06556 1.05954 1.21861 0.92742 0.82560 0.74678 1.90822 1.70365 1.33035 1.49974 1.48303 1.04851 1.07983 1.73852 1.22934 0.99559 0.81359 1.01163 1.23358 0.80282 1.02717 0.97850 1.88004 1.20475 1.28838 1.92166 1.22717 0.99891 0.83510 0.94803 1.22033 0.83623 0.92867 1.02996 0.85520 1.20279 0.78103 0.87345 0.82296 1.90657 1.58195 1.66243 1.30096 1.47935 1.39594 1.13226 1.33066 1.22148 0.92831 0.98014 0.88891 1.21892 0.94965 0.95453 1.03758 1.22108 1.00151 0.96515 0.98158 1.20677 0.91779 0.84662 0.96684 0.94858 1.42673 1.24743 1.03396 1.68561 1.18965 0.97375 0.92744 1.26911 0.92472 1.25449 0.98640 0.99533 1.01547 1.69867 1.24823 1.18991 1.49505 0.85454 0.78251 0.79265 0.79100 1.21016 1.21603 1.17718 1.21409 0.94291 0.83049 1.00842 0.87874 0.89244 0.85941 0.84907 0.87940 0.92919 0.83798 0.86013 0.93628 0.86628 0.90190 0.91733 0.87455 0.93435 0.91961 0.80290 0.93214 0.91828 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.63 71.24 0.69 -1.22 16 2 C 0.49 11.53 7.41 87.66 0.65 12.18 16 3 O -0.56 -20.47 12.96 20.67 0.27 -20.20 16 4 N -0.61 -10.94 3.02 -797.67 -2.41 -13.35 16 5 C 0.07 0.46 6.47 86.35 0.56 1.02 16 6 C 0.03 0.28 6.98 72.08 0.50 0.78 16 7 O -0.38 -5.64 10.74 -148.98 -1.60 -7.24 16 8 C 0.07 1.32 6.26 72.08 0.45 1.77 16 9 C 0.09 1.93 3.13 44.22 0.14 2.07 16 10 H 0.13 1.97 5.31 -2.39 -0.01 1.95 16 11 C 0.53 17.22 4.42 87.66 0.39 17.61 16 12 O -0.57 -24.55 13.91 20.68 0.29 -24.27 16 13 N -0.60 -18.82 2.97 -818.89 -2.43 -21.26 16 14 C 0.10 2.13 6.25 86.36 0.54 2.67 16 15 C -0.12 -2.78 6.08 30.67 0.19 -2.60 16 16 C -0.13 -4.36 5.49 30.73 0.17 -4.19 16 17 C 0.17 7.14 2.94 45.17 0.13 7.27 16 18 H 0.03 1.54 8.08 -2.39 -0.02 1.52 16 19 N -0.75 -37.84 4.94 -322.06 -1.59 -39.43 16 20 C -0.23 -13.72 10.42 84.03 0.88 -12.85 16 21 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 22 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 23 N -0.98 -64.90 13.97 21.65 0.30 -64.60 16 24 Si 0.95 47.96 27.74 68.60 1.90 49.86 16 25 H -0.28 -14.24 7.11 99.48 0.71 -13.54 16 26 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 27 H -0.25 -11.58 6.52 99.48 0.65 -10.93 16 28 C 0.13 4.98 5.90 86.36 0.51 5.49 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.12 0.36 6.00 -2.39 -0.01 0.34 16 32 H 0.13 0.04 5.49 -2.38 -0.01 0.03 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 38 H 0.12 1.58 5.25 -2.39 -0.01 1.56 16 39 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.36 17.81 5.66 -92.71 -0.52 17.29 16 45 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 46 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.06 2.58 7.00 -2.39 -0.02 2.56 16 Total: -1.00 -91.65 362.73 1.38 -90.26 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.40 Total: 23.44 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 6.26 Total: 26.78 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -6.13 Total: -138.64 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.04 Total: -51.71 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.90 Total: 49.86 kcal Total: -91.65 1.38 -90.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000966496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.789 kcal (2) G-P(sol) polarization free energy of solvation -91.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds