Wall clock time and date at job start Fri Apr 10 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 119.99865 * 2 1 4 4 N 1.34772 * 119.99801 * 180.02562 * 2 1 3 5 5 C 1.47152 * 120.98679 * 354.15715 * 4 2 1 6 6 C 1.53293 * 108.38613 * 129.47673 * 5 4 2 7 7 O 1.42971 * 109.22099 * 52.30620 * 6 5 4 8 8 C 1.42958 * 114.16299 * 297.41591 * 7 6 5 9 9 C 1.47173 * 120.94141 * 174.13832 * 4 2 1 10 10 H 1.08993 * 109.64660 * 110.77372 * 9 4 2 11 11 C 1.50700 * 109.72715 * 350.21392 * 9 4 2 12 12 O 1.21281 * 120.00098 * 301.12578 * 11 9 4 13 13 N 1.34774 * 119.99762 * 121.12444 * 11 9 4 14 14 C 1.46928 * 120.63325 * 353.95497 * 13 11 9 15 15 C 1.53623 * 108.54463 * 126.36951 * 14 13 11 16 16 C 1.53034 * 109.24540 * 54.85636 * 15 14 13 17 17 C 1.53049 * 109.53744 * 298.51057 * 16 15 14 18 18 H 1.08996 * 109.52619 * 301.39981 * 17 16 15 19 19 N 1.46497 * 109.49774 * 181.31594 * 17 16 15 20 20 C 1.36931 * 119.99986 * 85.16133 * 19 17 16 21 21 H 1.07995 * 120.00373 * 0.02562 * 20 19 17 22 22 C 1.38818 * 120.00198 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00369 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47094 * 59.99553 * 24 22 20 26 26 H 1.48497 * 109.47333 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46693 * 299.99646 * 24 22 20 28 28 C 1.46929 * 120.63094 * 174.23203 * 13 11 9 29 29 H 1.08994 * 109.47221 * 269.44782 * 1 2 3 30 30 H 1.09004 * 109.47160 * 29.45044 * 1 2 3 31 31 H 1.09002 * 109.47653 * 149.44614 * 1 2 3 32 32 H 1.08997 * 109.67742 * 9.75374 * 5 4 2 33 33 H 1.08996 * 109.67980 * 249.20549 * 5 4 2 34 34 H 1.08997 * 109.51667 * 292.38014 * 6 5 4 35 35 H 1.08994 * 109.51120 * 172.22441 * 6 5 4 36 36 H 1.09005 * 109.51273 * 182.50511 * 8 7 6 37 37 H 1.08996 * 109.51858 * 302.60518 * 8 7 6 38 38 H 1.09000 * 109.58412 * 246.19930 * 14 13 11 39 39 H 1.08996 * 109.58086 * 6.62529 * 14 13 11 40 40 H 1.09001 * 109.63112 * 294.86527 * 15 14 13 41 41 H 1.09001 * 109.43307 * 174.73121 * 15 14 13 42 42 H 1.08998 * 109.46327 * 178.49371 * 16 15 14 43 43 H 1.08995 * 109.44839 * 58.52336 * 16 15 14 44 44 H 0.97007 * 119.99872 * 265.16449 * 19 17 16 45 45 H 0.96993 * 120.00253 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.58573 * 353.37303 * 28 13 11 47 47 H 1.09000 * 109.58749 * 113.65950 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4727 -2.4508 0.1273 6 6 1.9477 -3.3790 -0.9964 7 8 3.3761 -3.4381 -0.9858 8 6 4.0155 -2.1850 -1.2399 9 6 3.6466 -1.1947 -0.1294 10 1 4.0913 -1.5165 0.8122 11 6 4.1517 0.1795 -0.4866 12 8 3.7652 0.7234 -1.4995 13 7 5.0328 0.8041 0.3194 14 6 5.4096 0.2184 1.6132 15 6 6.9412 0.1171 1.6762 16 6 7.5493 1.4960 1.4101 17 6 7.1554 1.9672 0.0082 18 1 7.5051 1.2459 -0.7303 19 7 7.7637 3.2732 -0.2575 20 6 9.0435 3.3471 -0.7389 21 1 9.6043 2.4427 -0.9230 22 6 9.6202 4.5845 -0.9902 23 7 8.9366 5.6868 -0.7663 24 14 11.3658 4.6854 -1.6475 25 1 11.4448 3.9811 -2.9524 26 1 11.7443 6.1096 -1.8305 27 1 12.2957 4.0456 -0.6825 28 6 5.6304 2.0868 -0.0761 29 1 -0.3633 -0.0099 1.0276 30 1 -0.3634 0.8949 -0.5053 31 1 -0.3634 -0.8850 -0.5224 32 1 0.3986 -2.2878 0.0395 33 1 1.6984 -2.8998 1.0945 34 1 1.6063 -2.9925 -1.9567 35 1 1.5408 -4.3780 -0.8397 36 1 5.0964 -2.3250 -1.2585 37 1 3.6825 -1.7945 -2.2014 38 1 5.0493 0.8550 2.4213 39 1 4.9721 -0.7756 1.7054 40 1 7.2929 -0.5873 0.9223 41 1 7.2414 -0.2282 2.6655 42 1 8.6352 1.4337 1.4804 43 1 7.1776 2.2053 2.1494 44 1 7.2599 4.0855 -0.0925 45 1 9.3393 6.5515 -0.9422 46 1 5.3387 2.3259 -1.0988 47 1 5.2858 2.8731 0.5956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000966501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:02 Heat of formation + Delta-G solvation = -100.473835 kcal Electronic energy + Delta-G solvation = -29592.291141 eV Core-core repulsion = 25582.395197 eV Total energy + Delta-G solvation = -4009.895945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24100 -40.40524 -39.35812 -38.49098 -36.24464 -35.91193 -33.99299 -33.04457 -32.72788 -30.79098 -30.17191 -28.59233 -26.77838 -26.07696 -25.05810 -23.48147 -23.23652 -21.99997 -20.81176 -19.73227 -19.19754 -18.71014 -18.08350 -17.83027 -16.92387 -16.87886 -16.65010 -16.36757 -16.00301 -15.87759 -15.71705 -15.39598 -15.31660 -15.09251 -14.76294 -14.70148 -14.39331 -14.22207 -13.80450 -13.64153 -13.27280 -13.05179 -13.01301 -12.93482 -12.84149 -12.53371 -12.37127 -12.20394 -12.12170 -12.01006 -11.85394 -11.73690 -11.65063 -11.36165 -10.92373 -10.86149 -10.58563 -9.75152 -9.58331 -9.05675 -7.96671 -5.27368 1.32919 1.44634 1.49030 1.54838 1.56702 1.85095 2.08538 2.54786 2.74737 3.30396 3.36330 3.48110 3.58648 3.76296 3.82815 3.94746 4.00837 4.04853 4.07221 4.14502 4.19342 4.26806 4.31859 4.36069 4.45481 4.53229 4.59926 4.63023 4.74663 4.76568 4.81245 4.84917 4.90764 5.04009 5.05156 5.12811 5.21881 5.36464 5.41774 5.49847 5.57617 5.96026 6.23566 6.24069 6.45039 7.04183 7.27398 7.29280 8.01561 8.26712 9.26853 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.003083 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.875592 B = 9078.647536 C = 9433.874740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.490 3.510 3 O -0.566 6.566 4 N -0.611 5.611 5 C 0.071 3.929 6 C 0.034 3.966 7 O -0.377 6.377 8 C 0.071 3.929 9 C 0.091 3.909 10 H 0.128 0.872 11 C 0.532 3.468 12 O -0.578 6.578 13 N -0.602 5.602 14 C 0.103 3.897 15 C -0.120 4.120 16 C -0.127 4.127 17 C 0.170 3.830 18 H 0.037 0.963 19 N -0.737 5.737 20 C -0.242 4.242 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.132 3.868 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.371 0.629 45 H 0.252 0.748 46 H 0.051 0.949 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.503 -25.739 7.413 33.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.281 3.719 3 O -0.444 6.444 4 N -0.349 5.349 5 C -0.050 4.050 6 C -0.043 4.043 7 O -0.295 6.295 8 C -0.008 4.008 9 C -0.016 4.016 10 H 0.145 0.855 11 C 0.321 3.679 12 O -0.458 6.458 13 N -0.335 5.335 14 C -0.018 4.018 15 C -0.159 4.159 16 C -0.167 4.167 17 C 0.061 3.939 18 H 0.055 0.945 19 N -0.377 5.377 20 C -0.373 4.373 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.622 5.622 24 Si 0.806 3.194 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.199 1.199 28 C 0.008 3.992 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.202 0.798 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.154 -25.124 6.842 32.325 hybrid contribution 0.811 1.691 -0.623 1.977 sum -18.343 -23.433 6.219 30.401 Atomic orbital electron populations 1.21940 0.87269 1.05996 1.06574 1.21925 0.92847 0.82515 0.74606 1.90825 1.70287 1.32989 1.50275 1.48341 1.04709 1.08004 1.73834 1.22931 0.99534 0.81287 1.01219 1.23374 0.80255 1.02803 0.97871 1.88004 1.20480 1.28677 1.92311 1.22680 0.99730 0.83504 0.94879 1.22055 0.83595 0.92871 1.03097 0.85518 1.20260 0.77553 0.87091 0.82952 1.90651 1.57789 1.67533 1.29812 1.47924 1.43597 1.21782 1.20228 1.22215 0.96154 0.99866 0.83565 1.21972 0.93778 0.96255 1.03902 1.22063 1.00395 0.97112 0.97176 1.20636 0.90168 0.87428 0.95714 0.94460 1.42519 1.13984 1.02857 1.78333 1.19557 0.90799 0.92615 1.34336 0.90519 1.25631 1.02762 0.95067 1.03405 1.69834 1.38716 0.97171 1.56467 0.85159 0.79682 0.76170 0.78433 1.20553 1.22148 1.19861 1.21377 0.93023 0.85213 0.99626 0.86264 0.89960 0.86646 0.84841 0.87860 0.92897 0.83736 0.86242 0.93578 0.91119 0.86725 0.90988 0.87697 0.92957 0.93157 0.79774 0.93970 0.92994 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.49 71.23 0.68 -1.28 16 2 C 0.49 11.89 7.46 87.66 0.65 12.55 16 3 O -0.57 -21.24 13.09 20.29 0.27 -20.97 16 4 N -0.61 -11.40 3.02 -797.64 -2.41 -13.81 16 5 C 0.07 0.50 6.53 86.35 0.56 1.07 16 6 C 0.03 0.29 6.99 72.08 0.50 0.79 16 7 O -0.38 -5.99 10.74 -148.98 -1.60 -7.59 16 8 C 0.07 1.44 6.25 72.08 0.45 1.89 16 9 C 0.09 2.03 3.23 44.22 0.14 2.18 16 10 H 0.13 2.15 5.12 -2.39 -0.01 2.14 16 11 C 0.53 18.26 4.26 87.66 0.37 18.64 16 12 O -0.58 -25.84 14.16 20.31 0.29 -25.56 16 13 N -0.60 -20.23 2.97 -818.05 -2.43 -22.66 16 14 C 0.10 2.42 6.39 86.51 0.55 2.97 16 15 C -0.12 -2.85 6.10 30.82 0.19 -2.67 16 16 C -0.13 -4.48 5.47 30.62 0.17 -4.32 16 17 C 0.17 7.37 2.92 45.07 0.13 7.50 16 18 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 19 N -0.74 -40.05 5.12 -322.57 -1.65 -41.70 16 20 C -0.24 -14.03 9.93 84.04 0.83 -13.20 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 23 N -0.97 -62.09 13.06 21.65 0.28 -61.81 16 24 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 27 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 28 C 0.13 5.58 5.88 86.36 0.51 6.09 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.12 0.56 6.23 -2.39 -0.01 0.55 16 32 H 0.13 0.09 5.50 -2.39 -0.01 0.08 16 33 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.05 1.16 7.92 -2.39 -0.02 1.15 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.12 1.84 5.04 -2.39 -0.01 1.83 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.37 21.81 7.80 -92.70 -0.72 21.09 16 45 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.05 2.56 7.04 -2.39 -0.02 2.55 16 47 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -89.21 366.01 1.25 -87.96 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.26 Total: 28.35 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 6.21 Total: 28.11 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -6.21 Total: -139.99 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -1.05 Total: -54.12 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -89.21 1.25 -87.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000966501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.516 kcal (2) G-P(sol) polarization free energy of solvation -89.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds