Wall clock time and date at job start Fri Apr 10 2020 18:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00163 * 2 1 4 4 N 1.34773 * 120.00447 * 179.97438 * 2 1 3 5 5 C 1.47162 * 120.97714 * 355.99686 * 4 2 1 6 6 C 1.53297 * 108.38057 * 230.55696 * 5 4 2 7 7 O 1.42967 * 109.22200 * 307.69622 * 6 5 4 8 8 C 1.42960 * 114.16553 * 62.58346 * 7 6 5 9 9 C 1.47147 * 120.98853 * 176.01643 * 4 2 1 10 10 H 1.09000 * 109.68689 * 249.20844 * 9 4 2 11 11 C 1.50701 * 109.67835 * 9.72491 * 9 4 2 12 12 O 1.21280 * 120.00570 * 61.95645 * 11 9 4 13 13 N 1.34784 * 119.99707 * 241.95884 * 11 9 4 14 14 C 1.46501 * 119.99705 * 180.02562 * 13 11 9 15 15 C 1.53037 * 109.45775 * 275.06274 * 14 13 11 16 16 C 1.53189 * 109.31240 * 178.61612 * 15 14 13 17 17 N 1.46934 * 108.77372 * 54.63779 * 16 15 14 18 18 C 1.36935 * 120.63297 * 126.41406 * 17 16 15 19 19 H 1.07996 * 120.00301 * 210.11482 * 18 17 16 20 20 C 1.38814 * 119.99823 * 30.11519 * 18 17 16 21 21 N 1.31622 * 120.00418 * 10.96420 * 20 18 17 22 22 Si 1.86805 * 119.99926 * 190.96341 * 20 18 17 23 23 H 1.48505 * 109.46779 * 90.00255 * 22 20 18 24 24 H 1.48500 * 109.47259 * 209.99747 * 22 20 18 25 25 H 1.48496 * 109.47296 * 330.00131 * 22 20 18 26 26 C 1.46921 * 118.73616 * 306.38937 * 17 16 15 27 27 C 1.53044 * 109.45871 * 154.99804 * 14 13 11 28 28 H 1.08997 * 109.47318 * 240.00340 * 1 2 3 29 29 H 1.09000 * 109.47373 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47357 * 120.00302 * 1 2 3 31 31 H 1.08998 * 109.67864 * 350.27463 * 5 4 2 32 32 H 1.08999 * 109.67887 * 110.79683 * 5 4 2 33 33 H 1.08994 * 109.51888 * 67.62144 * 6 5 4 34 34 H 1.09003 * 109.51083 * 187.77580 * 6 5 4 35 35 H 1.08998 * 109.51144 * 177.49335 * 8 7 6 36 36 H 1.09005 * 109.51193 * 57.34353 * 8 7 6 37 37 H 0.96995 * 119.99725 * 0.26884 * 13 11 9 38 38 H 1.08998 * 109.46156 * 35.02871 * 14 13 11 39 39 H 1.08996 * 109.49930 * 298.56961 * 15 14 13 40 40 H 1.08997 * 109.49733 * 58.66537 * 15 14 13 41 41 H 1.08999 * 109.59046 * 294.85386 * 16 15 14 42 42 H 1.08999 * 109.58941 * 174.42137 * 16 15 14 43 43 H 0.96995 * 120.00475 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58992 * 293.82052 * 26 17 16 45 45 H 1.09003 * 109.58531 * 173.39918 * 26 17 16 46 46 H 1.09003 * 109.49422 * 301.33782 * 27 14 13 47 47 H 1.09001 * 109.49680 * 61.42584 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4697 -2.4524 0.0892 6 6 2.1112 -3.2838 1.2060 7 8 3.5228 -3.3528 0.9899 8 6 4.1848 -2.0867 1.0382 9 6 3.6495 -1.1940 -0.0871 10 1 3.9524 -1.5984 -1.0529 11 6 4.1930 0.2027 0.0711 12 8 4.0044 0.8138 1.1017 13 7 4.8885 0.7729 -0.9327 14 6 5.4173 2.1305 -0.7787 15 6 4.3327 3.1450 -1.1481 16 6 4.8779 4.5632 -0.9528 17 7 6.1215 4.7020 -1.7229 18 6 6.2757 5.7242 -2.6209 19 1 6.8987 5.5880 -3.4925 20 6 5.6312 6.9356 -2.4109 21 7 5.0516 7.1811 -1.2550 22 14 5.5863 8.2175 -3.7690 23 1 4.3809 8.0055 -4.6101 24 1 5.5378 9.5744 -3.1676 25 1 6.8044 8.0915 -4.6090 26 6 7.1966 3.7234 -1.5108 27 6 6.6255 2.3146 -1.6999 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 0.4193 -2.2755 0.3204 32 1 1.5526 -2.9839 -0.8588 33 1 1.9130 -2.8142 2.1694 34 1 1.6920 -4.2900 1.1975 35 1 5.2574 -2.2315 0.9091 36 1 3.9940 -1.6126 2.0011 37 1 5.0360 0.2857 -1.7584 38 1 5.7226 2.2860 0.2561 39 1 4.0445 3.0063 -2.1901 40 1 3.4635 2.9979 -0.5071 41 1 5.0818 4.7340 0.1042 42 1 4.1455 5.2883 -1.3077 43 1 4.6016 8.0277 -1.1081 44 1 7.5896 3.8257 -0.4993 45 1 7.9942 3.8944 -2.2339 46 1 7.3881 1.5764 -1.4516 47 1 6.3157 2.1836 -2.7367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004177487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:11 Heat of formation + Delta-G solvation = -103.108250 kcal Electronic energy + Delta-G solvation = -29521.109961 eV Core-core repulsion = 25511.099780 eV Total energy + Delta-G solvation = -4010.010181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.07512 -40.19365 -39.31954 -38.72181 -35.94989 -35.88508 -33.98188 -33.07232 -31.70261 -31.11542 -30.79873 -28.56995 -27.11427 -25.68526 -23.91813 -23.75976 -23.17456 -21.81633 -21.13004 -20.12979 -18.91752 -18.44672 -17.92928 -17.70016 -17.20903 -16.80735 -16.63596 -16.33152 -16.01441 -15.81183 -15.58569 -15.35007 -15.23770 -14.84850 -14.71381 -14.59366 -14.21217 -14.11579 -13.93608 -13.28405 -13.20538 -13.14719 -13.02454 -12.94781 -12.66605 -12.61065 -12.45297 -12.11737 -12.04606 -11.99602 -11.88607 -11.54675 -11.40528 -11.31341 -10.78913 -10.60729 -10.50869 -9.92845 -9.66009 -8.70023 -7.86844 -5.39345 1.39746 1.45170 1.47319 1.56592 1.59154 2.11770 2.18576 2.49666 2.82119 3.28694 3.47934 3.61628 3.68770 3.82791 3.83695 3.92993 4.00617 4.11704 4.19598 4.21097 4.34304 4.39106 4.46051 4.47160 4.58178 4.60442 4.68126 4.77499 4.78899 4.89107 4.90566 5.02901 5.05138 5.08201 5.20755 5.28976 5.30339 5.47625 5.61224 5.64619 5.69070 5.97334 6.25613 6.38641 6.66538 7.11591 7.13169 7.48546 7.81763 8.36325 9.19406 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.003089 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.082977 B = 9060.989188 C = 9808.809066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.484 3.516 3 O -0.553 6.553 4 N -0.612 5.612 5 C 0.074 3.926 6 C 0.036 3.964 7 O -0.379 6.379 8 C 0.071 3.929 9 C 0.096 3.904 10 H 0.121 0.879 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.711 5.711 14 C 0.172 3.828 15 C -0.121 4.121 16 C 0.187 3.813 17 N -0.611 5.611 18 C -0.262 4.262 19 H 0.075 0.925 20 C -0.058 4.058 21 N -0.942 5.942 22 Si 0.976 3.024 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.262 1.262 26 C 0.142 3.858 27 C -0.121 4.121 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.045 0.955 37 H 0.408 0.592 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.044 0.956 41 H -0.018 1.018 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 -28.425 0.275 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.275 3.725 3 O -0.430 6.430 4 N -0.350 5.350 5 C -0.047 4.047 6 C -0.040 4.040 7 O -0.297 6.297 8 C -0.007 4.007 9 C -0.012 4.012 10 H 0.139 0.861 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.364 5.364 14 C 0.067 3.933 15 C -0.162 4.162 16 C 0.060 3.940 17 N -0.334 5.334 18 C -0.392 4.392 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.588 5.588 22 Si 0.803 3.197 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.186 1.186 26 C 0.016 3.984 27 C -0.160 4.160 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.161 0.839 35 H 0.142 0.858 36 H 0.064 0.936 37 H 0.244 0.756 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.000 1.000 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.328 -27.462 1.024 28.715 hybrid contribution -0.273 1.522 -0.435 1.607 sum -8.600 -25.939 0.589 27.334 Atomic orbital electron populations 1.21915 0.87717 1.05652 1.06510 1.21930 0.92752 0.82769 0.75089 1.90911 1.69951 1.32693 1.49463 1.48285 1.04478 1.07701 1.74562 1.22835 0.98452 0.81972 1.01468 1.23325 0.80475 1.03224 0.97023 1.87989 1.21415 1.27547 1.92774 1.22715 0.98617 0.83748 0.95639 1.21895 0.82819 0.93240 1.03210 0.86119 1.20207 0.76876 0.87684 0.83538 1.90678 1.57865 1.64904 1.31389 1.45878 1.56171 1.16130 1.18186 1.20490 0.93255 0.80808 0.98715 1.22191 0.98059 0.96374 0.99546 1.20442 0.88779 0.93014 0.91745 1.44341 1.12287 1.30030 1.46771 1.19619 1.28117 0.90772 1.00735 0.90706 1.26045 1.01426 0.99233 0.98553 1.70197 1.40742 1.24050 1.23840 0.85137 0.78353 0.77741 0.78420 1.21243 1.22242 1.18620 1.21050 0.90828 0.88449 0.98073 1.22150 0.96380 0.98189 0.99310 0.86806 0.90471 0.86255 0.85415 0.88092 0.93097 0.83913 0.85775 0.93618 0.75576 0.93312 0.93568 0.93750 0.99989 0.92740 0.94221 0.97141 0.91111 0.88734 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.75 71.23 0.62 -1.69 16 2 C 0.48 12.41 7.65 87.66 0.67 13.08 16 3 O -0.55 -21.57 11.52 20.61 0.24 -21.33 16 4 N -0.61 -11.73 3.02 -797.66 -2.41 -14.13 16 5 C 0.07 0.60 6.53 86.35 0.56 1.16 16 6 C 0.04 0.33 6.99 72.08 0.50 0.84 16 7 O -0.38 -5.90 10.74 -148.98 -1.60 -7.50 16 8 C 0.07 1.35 6.24 72.08 0.45 1.80 16 9 C 0.10 2.04 3.50 44.22 0.15 2.20 16 10 H 0.12 1.88 7.93 -2.39 -0.02 1.86 16 11 C 0.53 17.11 4.42 87.66 0.39 17.50 16 12 O -0.57 -24.67 14.21 20.63 0.29 -24.37 16 13 N -0.71 -21.80 5.08 -442.39 -2.25 -24.04 16 14 C 0.17 6.71 2.41 45.02 0.11 6.82 16 15 C -0.12 -5.74 5.65 30.67 0.17 -5.56 16 16 C 0.19 10.48 5.27 86.36 0.45 10.94 16 17 N -0.61 -33.05 2.99 -699.11 -2.09 -35.15 16 18 C -0.26 -15.07 9.60 84.03 0.81 -14.27 16 19 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 20 C -0.06 -3.41 5.05 84.86 0.43 -2.98 16 21 N -0.94 -59.79 10.97 21.65 0.24 -59.55 16 22 Si 0.98 46.71 29.57 68.60 2.03 48.74 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.14 6.13 6.52 86.36 0.56 6.69 16 27 C -0.12 -4.11 5.55 30.67 0.17 -3.94 16 28 H 0.11 0.98 7.49 -2.39 -0.02 0.97 16 29 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 30 H 0.12 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.13 0.31 6.07 -2.39 -0.01 0.30 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.10 7.86 -2.38 -0.02 1.08 16 37 H 0.41 9.32 8.45 -92.71 -0.78 8.54 16 38 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 2.30 6.88 -2.39 -0.02 2.28 16 41 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 42 H 0.05 3.42 6.01 -2.39 -0.01 3.41 16 43 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.07 2.84 7.93 -2.39 -0.02 2.82 16 46 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -88.87 365.44 0.70 -88.17 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.19 Total: 16.59 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: 6.06 Total: 32.58 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -6.51 Total: -132.87 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -1.07 Total: -53.20 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -88.87 0.70 -88.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004177487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.942 kcal (2) G-P(sol) polarization free energy of solvation -88.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds