Wall clock time and date at job start Fri Apr 10 2020 18:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99760 * 2 1 4 4 N 1.34770 * 120.00279 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98021 * 0.02562 * 4 2 1 6 6 C 1.53303 * 108.38420 * 129.48398 * 5 4 2 7 7 O 1.42962 * 109.21896 * 52.30716 * 6 5 4 8 8 C 1.42960 * 114.16388 * 297.41481 * 7 6 5 9 9 H 1.08999 * 109.51787 * 302.60708 * 8 7 6 10 10 C 1.50703 * 109.51405 * 182.50907 * 8 7 6 11 11 O 1.21283 * 119.99488 * 354.99931 * 10 8 7 12 12 N 1.34777 * 120.00290 * 175.00371 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.53000 * 110.64592 * 59.01891 * 13 12 10 15 15 C 1.55154 * 110.71853 * 182.16236 * 13 12 10 16 16 C 1.54914 * 101.58099 * 82.85960 * 15 13 12 17 17 N 1.47420 * 104.83180 * 37.01014 * 16 15 13 18 18 C 1.36937 * 125.64796 * 155.91316 * 17 16 15 19 19 H 1.07998 * 119.99928 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99896 * 359.97336 * 18 17 16 21 21 N 1.31614 * 120.00015 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99804 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46955 * 90.00111 * 22 20 18 24 24 H 1.48495 * 109.47455 * 209.99984 * 22 20 18 25 25 H 1.48500 * 109.47166 * 330.00262 * 22 20 18 26 26 C 1.47487 * 108.75853 * 335.89072 * 17 16 15 27 27 C 1.47153 * 120.98587 * 180.02562 * 4 2 1 28 28 H 1.09004 * 109.47564 * 240.00229 * 1 2 3 29 29 H 1.09007 * 109.47178 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47050 * 119.99993 * 1 2 3 31 31 H 1.09005 * 109.68463 * 9.76321 * 5 4 2 32 32 H 1.08994 * 109.68641 * 249.21023 * 5 4 2 33 33 H 1.08992 * 109.51254 * 292.38228 * 6 5 4 34 34 H 1.09000 * 109.50835 * 172.22943 * 6 5 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 36 36 H 1.09005 * 109.46685 * 60.70088 * 14 13 12 37 37 H 1.08993 * 109.47416 * 180.69863 * 14 13 12 38 38 H 1.08998 * 109.47427 * 300.70570 * 14 13 12 39 39 H 1.09003 * 111.00887 * 200.93097 * 15 13 12 40 40 H 1.08998 * 111.00705 * 324.74385 * 15 13 12 41 41 H 1.09005 * 110.36395 * 155.84864 * 16 15 13 42 42 H 1.08992 * 110.36881 * 278.16843 * 16 15 13 43 43 H 0.96997 * 119.99868 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.03223 * 241.66293 * 26 17 16 45 45 H 1.09007 * 109.96230 * 120.35319 * 26 17 16 46 46 H 1.09000 * 109.67776 * 110.79211 * 27 4 2 47 47 H 1.08992 * 109.67844 * 350.23756 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4671 -2.4539 0.0005 6 6 2.0419 -3.3257 -1.1219 7 8 3.4638 -3.3885 -0.9876 8 6 4.1205 -2.1256 -1.1208 9 1 3.8732 -1.6866 -2.0873 10 6 5.6117 -2.3209 -1.0236 11 8 6.0642 -3.4164 -0.7665 12 7 6.4423 -1.2782 -1.2222 13 6 7.8920 -1.4695 -1.1338 14 6 8.3614 -2.5133 -2.1491 15 6 8.6369 -0.1249 -1.3445 16 6 8.5652 0.4959 0.0730 17 7 8.7213 -0.6453 0.9931 18 6 9.1789 -0.5747 2.2818 19 1 9.2566 -1.4724 2.8772 20 6 9.5428 0.6508 2.8229 21 7 9.4476 1.7448 2.0975 22 14 10.1664 0.7472 4.5811 23 1 11.6424 0.5842 4.5924 24 1 9.8097 2.0668 5.1612 25 1 9.5429 -0.3328 5.3874 26 6 8.3027 -1.8764 0.2971 27 6 3.6522 -1.1924 0.0011 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 0.4045 -2.2844 -0.1740 32 1 1.6071 -2.9515 0.9601 33 1 1.7862 -2.8907 -2.0879 34 1 1.6249 -4.3304 -1.0523 35 1 6.0803 -0.4022 -1.4281 36 1 8.1216 -2.1735 -3.1567 37 1 9.4390 -2.6495 -2.0585 38 1 7.8580 -3.4605 -1.9557 39 1 9.6710 -0.2939 -1.6450 40 1 8.1180 0.4995 -2.0718 41 1 9.3751 1.2114 0.2152 42 1 7.6002 0.9785 0.2274 43 1 9.7023 2.6010 2.4754 44 1 7.4542 -2.3266 0.8124 45 1 9.1324 -2.5823 0.2580 46 1 4.0126 -1.5627 0.9608 47 1 4.0366 -0.1874 -0.1730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046814530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:26 Heat of formation + Delta-G solvation = -71.313598 kcal Electronic energy + Delta-G solvation = -29410.294197 eV Core-core repulsion = 25401.662735 eV Total energy + Delta-G solvation = -4008.631462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82719 -39.74186 -38.45006 -37.06806 -35.04347 -34.00181 -32.71885 -31.49061 -30.23636 -29.88260 -28.65916 -27.79953 -25.66690 -24.89160 -23.68833 -22.94464 -20.82214 -20.24565 -19.57652 -19.02686 -17.73842 -17.13381 -16.94456 -16.61153 -16.28056 -15.83078 -15.42465 -15.33846 -14.68292 -14.63304 -14.31172 -13.90345 -13.81657 -13.64152 -13.27152 -13.12089 -12.81752 -12.74136 -12.49266 -12.31682 -12.18382 -12.02005 -11.78232 -11.71979 -11.53579 -11.17674 -10.90726 -10.82828 -10.51135 -10.39605 -10.31745 -10.10544 -10.05722 -9.89292 -9.62292 -9.26362 -8.87362 -8.67365 -8.60120 -6.77824 -5.61180 -3.01529 2.33659 2.47254 2.81791 2.87074 3.43626 3.48688 3.50798 3.87661 4.23253 4.34088 4.52059 4.53293 4.65197 4.69245 4.85236 4.86079 4.87057 5.01375 5.18112 5.23699 5.25067 5.38802 5.40769 5.52128 5.52255 5.58867 5.68587 5.75645 5.99821 6.04148 6.17765 6.23970 6.36686 6.47073 6.51720 6.70530 6.71494 6.85265 7.02972 7.13465 7.49320 7.66336 7.76351 7.86536 7.87646 8.38327 8.45479 9.26987 9.87365 10.52298 11.43135 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003894 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.482026 B = 7189.097222 C = 8410.271509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.536 6.536 4 N -0.618 5.618 5 C 0.070 3.930 6 C 0.046 3.954 7 O -0.347 6.347 8 C 0.064 3.936 9 H 0.085 0.915 10 C 0.524 3.476 11 O -0.511 6.511 12 N -0.703 5.703 13 C 0.160 3.840 14 C -0.151 4.151 15 C -0.146 4.146 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.218 4.218 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.924 5.924 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.137 3.863 27 C 0.088 3.912 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.398 0.602 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.011 0.989 43 H 0.251 0.749 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.086 0.914 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 -7.006 -10.734 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.412 6.412 4 N -0.354 5.354 5 C -0.053 4.053 6 C -0.032 4.032 7 O -0.265 6.265 8 C 0.001 3.999 9 H 0.103 0.897 10 C 0.307 3.693 11 O -0.386 6.386 12 N -0.356 5.356 13 C 0.075 3.925 14 C -0.210 4.210 15 C -0.185 4.185 16 C 0.028 3.972 17 N -0.331 5.331 18 C -0.347 4.347 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.573 5.573 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.010 3.990 27 C -0.035 4.035 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.233 0.767 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.029 0.971 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.105 0.895 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.809 -7.252 -10.332 21.829 hybrid contribution -0.234 0.660 0.829 1.085 sum -18.043 -6.592 -9.502 21.431 Atomic orbital electron populations 1.21939 0.91444 1.05692 1.04078 1.20883 0.90714 0.82805 0.75546 1.90775 1.70628 1.30726 1.49043 1.48192 1.06607 1.06201 1.74398 1.22535 0.97412 0.84363 1.01034 1.23054 0.81665 1.01314 0.97122 1.88130 1.18055 1.27111 1.93166 1.22302 0.92126 0.86124 0.99306 0.89715 1.19685 0.86732 0.85133 0.77729 1.90697 1.77109 1.24760 1.46005 1.45921 1.06668 1.11351 1.71639 1.21391 0.77977 0.96712 0.96440 1.22059 1.01551 0.99920 0.97424 1.23363 0.99610 0.94378 1.01142 1.21938 1.01232 0.91008 0.83042 1.44609 1.75981 1.01412 1.11049 1.19091 1.34826 0.93634 0.87109 0.90575 1.24749 1.02101 0.95325 0.98518 1.69769 1.54547 0.97828 1.35148 0.86084 0.78585 0.76876 0.84060 1.21620 1.21704 1.20802 1.21684 0.97133 0.90424 0.89725 1.22178 0.79897 1.01872 0.99525 0.89258 0.88758 0.89383 0.88398 0.89928 0.92455 0.86965 0.76734 0.93142 0.91649 0.90792 0.90428 0.91842 0.87424 0.97079 0.93807 0.94932 0.95036 0.89548 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 8.69 36.00 0.31 -0.77 16 2 C 0.51 5.85 7.82 -10.99 -0.09 5.77 16 3 O -0.54 -8.75 16.55 5.56 0.09 -8.66 16 4 N -0.62 -6.60 3.02 -172.30 -0.52 -7.12 16 5 C 0.07 0.49 6.54 -3.53 -0.02 0.47 16 6 C 0.05 0.35 6.99 37.31 0.26 0.62 16 7 O -0.35 -4.48 9.92 -55.06 -0.55 -5.02 16 8 C 0.06 0.82 3.19 -27.75 -0.09 0.73 16 9 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 10 C 0.52 8.54 6.39 -10.98 -0.07 8.47 16 11 O -0.51 -10.12 13.46 -14.28 -0.19 -10.31 16 12 N -0.70 -11.17 5.11 -45.92 -0.23 -11.40 16 13 C 0.16 2.88 0.81 -129.99 -0.10 2.78 16 14 C -0.15 -2.40 8.40 37.16 0.31 -2.09 16 15 C -0.15 -2.66 6.08 -24.58 -0.15 -2.81 16 16 C 0.15 3.65 5.87 -2.53 -0.01 3.64 16 17 N -0.60 -15.79 3.41 -169.70 -0.58 -16.37 16 18 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -27.15 10.09 55.49 0.56 -26.59 16 22 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.14 3.08 6.20 -2.81 -0.02 3.06 16 27 C 0.09 1.17 5.88 -3.55 -0.02 1.15 16 28 H 0.09 0.40 8.02 -51.93 -0.42 -0.01 16 29 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.09 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.10 0.35 6.05 -51.93 -0.31 0.04 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 5.54 8.48 -40.82 -0.35 5.19 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.07 1.27 6.19 -51.93 -0.32 0.95 16 39 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 40 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 41 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.79 6.69 -51.93 -0.35 0.45 16 45 H 0.03 0.72 7.80 -51.92 -0.41 0.32 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.11 1.59 7.08 -51.93 -0.37 1.22 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -36.53 370.38 -8.21 -44.74 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.41 Total: 3.38 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 0.06 Total: 14.17 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.77 Total: -61.48 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.65 Total: -24.00 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.53 -8.21 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046814530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.575 kcal (2) G-P(sol) polarization free energy of solvation -36.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds