Wall clock time and date at job start Fri Apr 10 2020 18:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99760 * 2 1 4 4 N 1.34770 * 120.00279 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98021 * 0.02562 * 4 2 1 6 6 C 1.53303 * 108.38420 * 129.48398 * 5 4 2 7 7 O 1.42962 * 109.21896 * 52.30716 * 6 5 4 8 8 C 1.42960 * 114.16388 * 297.41481 * 7 6 5 9 9 H 1.08999 * 109.51787 * 302.60708 * 8 7 6 10 10 C 1.50703 * 109.51405 * 182.50907 * 8 7 6 11 11 O 1.21283 * 119.99488 * 354.99931 * 10 8 7 12 12 N 1.34777 * 120.00290 * 175.00371 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.53000 * 110.64592 * 59.01891 * 13 12 10 15 15 C 1.55154 * 110.71853 * 182.16236 * 13 12 10 16 16 C 1.54914 * 101.58099 * 82.85960 * 15 13 12 17 17 N 1.47420 * 104.83180 * 37.01014 * 16 15 13 18 18 C 1.36937 * 125.64796 * 155.91316 * 17 16 15 19 19 H 1.07998 * 119.99928 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99896 * 359.97336 * 18 17 16 21 21 N 1.31614 * 120.00015 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99804 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46955 * 90.00111 * 22 20 18 24 24 H 1.48495 * 109.47455 * 209.99984 * 22 20 18 25 25 H 1.48500 * 109.47166 * 330.00262 * 22 20 18 26 26 C 1.47487 * 108.75853 * 335.89072 * 17 16 15 27 27 C 1.47153 * 120.98587 * 180.02562 * 4 2 1 28 28 H 1.09004 * 109.47564 * 240.00229 * 1 2 3 29 29 H 1.09007 * 109.47178 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47050 * 119.99993 * 1 2 3 31 31 H 1.09005 * 109.68463 * 9.76321 * 5 4 2 32 32 H 1.08994 * 109.68641 * 249.21023 * 5 4 2 33 33 H 1.08992 * 109.51254 * 292.38228 * 6 5 4 34 34 H 1.09000 * 109.50835 * 172.22943 * 6 5 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 36 36 H 1.09005 * 109.46685 * 60.70088 * 14 13 12 37 37 H 1.08993 * 109.47416 * 180.69863 * 14 13 12 38 38 H 1.08998 * 109.47427 * 300.70570 * 14 13 12 39 39 H 1.09003 * 111.00887 * 200.93097 * 15 13 12 40 40 H 1.08998 * 111.00705 * 324.74385 * 15 13 12 41 41 H 1.09005 * 110.36395 * 155.84864 * 16 15 13 42 42 H 1.08992 * 110.36881 * 278.16843 * 16 15 13 43 43 H 0.96997 * 119.99868 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.03223 * 241.66293 * 26 17 16 45 45 H 1.09007 * 109.96230 * 120.35319 * 26 17 16 46 46 H 1.09000 * 109.67776 * 110.79211 * 27 4 2 47 47 H 1.08992 * 109.67844 * 350.23756 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4671 -2.4539 0.0005 6 6 2.0419 -3.3257 -1.1219 7 8 3.4638 -3.3885 -0.9876 8 6 4.1205 -2.1256 -1.1208 9 1 3.8732 -1.6866 -2.0873 10 6 5.6117 -2.3209 -1.0236 11 8 6.0642 -3.4164 -0.7665 12 7 6.4423 -1.2782 -1.2222 13 6 7.8920 -1.4695 -1.1338 14 6 8.3614 -2.5133 -2.1491 15 6 8.6369 -0.1249 -1.3445 16 6 8.5652 0.4959 0.0730 17 7 8.7213 -0.6453 0.9931 18 6 9.1789 -0.5747 2.2818 19 1 9.2566 -1.4724 2.8772 20 6 9.5428 0.6508 2.8229 21 7 9.4476 1.7448 2.0975 22 14 10.1664 0.7472 4.5811 23 1 11.6424 0.5842 4.5924 24 1 9.8097 2.0668 5.1612 25 1 9.5429 -0.3328 5.3874 26 6 8.3027 -1.8764 0.2971 27 6 3.6522 -1.1924 0.0011 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 0.4045 -2.2844 -0.1740 32 1 1.6071 -2.9515 0.9601 33 1 1.7862 -2.8907 -2.0879 34 1 1.6249 -4.3304 -1.0523 35 1 6.0803 -0.4022 -1.4281 36 1 8.1216 -2.1735 -3.1567 37 1 9.4390 -2.6495 -2.0585 38 1 7.8580 -3.4605 -1.9557 39 1 9.6710 -0.2939 -1.6450 40 1 8.1180 0.4995 -2.0718 41 1 9.3751 1.2114 0.2152 42 1 7.6002 0.9785 0.2274 43 1 9.7023 2.6010 2.4754 44 1 7.4542 -2.3266 0.8124 45 1 9.1324 -2.5823 0.2580 46 1 4.0126 -1.5627 0.9608 47 1 4.0366 -0.1874 -0.1730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046814530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:25 Heat of formation + Delta-G solvation = -98.850717 kcal Electronic energy + Delta-G solvation = -29411.488296 eV Core-core repulsion = 25401.662735 eV Total energy + Delta-G solvation = -4009.825561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87256 -40.96204 -39.55046 -38.55218 -36.01502 -35.69919 -34.07516 -32.95326 -31.53246 -30.81723 -30.37165 -28.66925 -27.56682 -25.90617 -25.33741 -23.85810 -22.37568 -21.86185 -20.51061 -20.40089 -19.10109 -18.55937 -18.00840 -17.81036 -17.24288 -16.99447 -16.72511 -16.59539 -16.24372 -15.76859 -15.69274 -15.40696 -14.97697 -14.76784 -14.61305 -14.28085 -14.07625 -13.94142 -13.64887 -13.55113 -13.32992 -13.15249 -13.08342 -12.96215 -12.83144 -12.79811 -12.70467 -12.10755 -12.07306 -12.01122 -11.92222 -11.70249 -11.56212 -11.38193 -11.01134 -10.76863 -10.62528 -10.11006 -9.77540 -8.90935 -7.80383 -5.23981 1.36427 1.43009 1.44936 1.52220 1.53586 1.73780 1.82553 2.46459 2.90726 3.29049 3.40185 3.49388 3.58195 3.67453 3.69786 3.77997 3.95564 3.99663 4.13422 4.16190 4.23908 4.28743 4.45630 4.52143 4.61671 4.63872 4.65466 4.72390 4.76696 4.83810 4.85853 4.88817 5.00226 5.06394 5.07117 5.17491 5.32088 5.40598 5.57119 5.62909 5.78102 5.92881 6.25299 6.28861 6.50100 7.01889 7.08711 7.16753 7.74843 8.38593 9.20988 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003894 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.482026 B = 7189.097222 C = 8410.271509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.597 6.597 4 N -0.616 5.616 5 C 0.067 3.933 6 C 0.039 3.961 7 O -0.377 6.377 8 C 0.081 3.919 9 H 0.112 0.888 10 C 0.520 3.480 11 O -0.550 6.550 12 N -0.699 5.699 13 C 0.170 3.830 14 C -0.141 4.141 15 C -0.126 4.126 16 C 0.155 3.845 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.060 4.060 21 N -0.944 5.944 22 Si 0.978 3.022 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.137 3.863 27 C 0.092 3.908 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.409 0.591 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.077 0.923 42 H -0.011 1.011 43 H 0.248 0.752 44 H 0.007 0.993 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.889 -7.817 -12.289 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.295 3.705 3 O -0.477 6.477 4 N -0.351 5.351 5 C -0.054 4.054 6 C -0.038 4.038 7 O -0.295 6.295 8 C 0.019 3.981 9 H 0.130 0.870 10 C 0.305 3.695 11 O -0.427 6.427 12 N -0.352 5.352 13 C 0.083 3.917 14 C -0.199 4.199 15 C -0.165 4.165 16 C 0.030 3.970 17 N -0.349 5.349 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.806 3.194 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.202 1.202 26 C 0.010 3.990 27 C -0.032 4.032 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.007 0.993 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.112 -8.097 -11.911 24.737 hybrid contribution 0.408 0.855 1.372 1.667 sum -19.705 -7.242 -10.540 23.490 Atomic orbital electron populations 1.21990 0.86781 1.06494 1.06841 1.21944 0.92820 0.81842 0.73915 1.90748 1.72194 1.32895 1.51911 1.48338 1.05345 1.07763 1.73615 1.22849 0.99427 0.82306 1.00864 1.23445 0.78856 1.03262 0.98216 1.88096 1.21117 1.26831 1.93452 1.22064 0.89568 0.86424 1.00083 0.87010 1.20329 0.88337 0.84388 0.76443 1.90673 1.78118 1.26246 1.47626 1.45857 1.05954 1.12028 1.71340 1.21223 0.79260 0.97134 0.94040 1.21970 1.01651 0.98287 0.97994 1.23209 1.00898 0.94304 0.98083 1.21746 0.98679 0.90321 0.86208 1.44890 1.75865 1.03239 1.10952 1.19380 1.35414 0.93764 0.88684 0.91191 1.25547 1.02416 0.94959 1.02388 1.70013 1.54943 0.97952 1.36441 0.85095 0.78183 0.76700 0.79453 1.20750 1.21680 1.20192 1.21759 0.95821 0.89106 0.92270 1.21869 0.82337 1.00702 0.98336 0.86806 0.89148 0.85856 0.83831 0.90281 0.90523 0.84315 0.75499 0.90153 0.91062 0.92235 0.89469 0.88111 0.90555 0.99289 0.94206 0.97502 0.95649 0.92537 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.69 71.24 0.62 -0.85 16 2 C 0.50 10.91 7.82 87.66 0.69 11.59 16 3 O -0.60 -19.94 16.55 -3.04 -0.05 -19.99 16 4 N -0.62 -12.38 3.02 -817.42 -2.47 -14.85 16 5 C 0.07 0.73 6.54 86.36 0.56 1.30 16 6 C 0.04 0.47 6.99 72.08 0.50 0.97 16 7 O -0.38 -9.22 9.92 -130.02 -1.29 -10.51 16 8 C 0.08 2.04 3.19 29.94 0.10 2.13 16 9 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 10 C 0.52 17.09 6.39 87.66 0.56 17.65 16 11 O -0.55 -22.24 13.46 15.92 0.21 -22.03 16 12 N -0.70 -22.13 5.11 -417.57 -2.13 -24.26 16 13 C 0.17 6.05 0.81 4.79 0.00 6.05 16 14 C -0.14 -4.25 8.40 71.98 0.60 -3.64 16 15 C -0.13 -4.48 6.08 31.99 0.19 -4.29 16 16 C 0.16 7.65 5.87 86.86 0.51 8.16 16 17 N -0.62 -33.86 3.41 -690.80 -2.35 -36.21 16 18 C -0.24 -14.49 10.28 84.03 0.86 -13.63 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 21 N -0.94 -57.14 10.09 21.65 0.22 -56.92 16 22 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 C 0.14 6.37 6.20 86.64 0.54 6.91 16 27 C 0.09 2.51 5.88 86.34 0.51 3.02 16 28 H 0.11 0.53 8.02 -2.39 -0.02 0.51 16 29 H 0.09 0.96 8.12 -2.38 -0.02 0.94 16 30 H 0.12 0.29 7.66 -2.39 -0.02 0.27 16 31 H 0.14 0.26 6.05 -2.38 -0.01 0.24 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.41 11.22 8.48 -92.71 -0.79 10.43 16 36 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 38 H 0.06 2.01 6.19 -2.39 -0.01 1.99 16 39 H 0.09 2.97 8.05 -2.39 -0.02 2.95 16 40 H 0.10 2.85 8.06 -2.39 -0.02 2.83 16 41 H 0.08 4.27 5.88 -2.38 -0.01 4.26 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.01 0.36 6.69 -2.38 -0.02 0.34 16 45 H 0.03 1.21 7.80 -2.38 -0.02 1.19 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 2.82 7.08 -2.39 -0.02 2.80 16 Total: -1.00 -85.67 370.38 1.08 -84.59 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.20 Total: 18.37 kcal Atomic # 6 Polarization: 25.58 SS G_CDS: 6.72 Total: 32.30 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -6.74 Total: -132.25 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -1.13 Total: -52.53 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -85.67 1.08 -84.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046814530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.259 kcal (2) G-P(sol) polarization free energy of solvation -85.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds