Wall clock time and date at job start Fri Apr 10 2020 18:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00325 * 2 1 4 4 O 1.21281 * 120.00108 * 5.52690 * 3 2 1 5 5 C 1.50701 * 120.00022 * 185.51980 * 3 2 1 6 6 H 1.09007 * 109.67278 * 41.12172 * 5 3 2 7 7 C 1.53340 * 109.67461 * 161.61920 * 5 3 2 8 8 C 1.52916 * 108.67826 * 187.26761 * 7 5 3 9 9 N 1.45755 * 110.48555 * 309.24855 * 8 7 5 10 10 C 1.46504 * 117.94479 * 199.07565 * 9 8 7 11 11 C 1.33350 * 124.11068 * 19.09082 * 9 8 7 12 12 O 1.21279 * 118.25163 * 177.77426 * 11 9 8 13 13 C 1.50182 * 123.50198 * 357.73960 * 11 9 8 14 14 C 1.46501 * 119.99760 * 179.97438 * 2 1 3 15 15 H 1.08997 * 110.91924 * 182.43327 * 14 2 1 16 16 C 1.54911 * 111.00398 * 306.33773 * 14 2 1 17 17 N 1.47427 * 104.83258 * 155.08522 * 16 14 2 18 18 C 1.36929 * 125.65252 * 155.89592 * 17 16 14 19 19 H 1.08004 * 119.99786 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00361 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00376 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46781 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47194 * 119.99169 * 22 20 18 25 25 H 1.48494 * 109.47377 * 239.99483 * 22 20 18 26 26 C 1.47023 * 108.70195 * 335.86792 * 17 16 14 27 27 C 1.54333 * 107.27273 * 1.06265 * 26 17 16 28 28 H 1.09000 * 110.71861 * 263.65228 * 27 26 17 29 29 O 1.42896 * 110.72204 * 140.55440 * 27 26 17 30 30 H 1.09005 * 109.46989 * 274.83726 * 1 2 3 31 31 H 1.09005 * 109.46504 * 34.83014 * 1 2 3 32 32 H 1.08997 * 109.47473 * 154.83387 * 1 2 3 33 33 H 1.09003 * 109.60148 * 307.02238 * 7 5 3 34 34 H 1.09001 * 109.60288 * 67.34388 * 7 5 3 35 35 H 1.09005 * 109.30260 * 69.55852 * 8 7 5 36 36 H 1.09003 * 109.30574 * 189.14141 * 8 7 5 37 37 H 1.08996 * 109.47650 * 90.00152 * 10 9 8 38 38 H 1.09009 * 109.47005 * 210.00020 * 10 9 8 39 39 H 1.09002 * 109.47031 * 329.99283 * 10 9 8 40 40 H 1.09000 * 109.41264 * 257.48147 * 13 11 9 41 41 H 1.09003 * 109.38508 * 137.73563 * 13 11 9 42 42 H 1.08992 * 110.36808 * 36.24507 * 16 14 2 43 43 H 1.08995 * 110.36798 * 273.91616 * 16 14 2 44 44 H 0.97002 * 120.00456 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.88382 * 120.47731 * 26 17 16 46 46 H 1.09000 * 109.88517 * 241.49412 * 26 17 16 47 47 H 0.96699 * 114.00053 * 61.45567 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5368 2.2151 0.1012 5 6 3.6407 1.1701 -0.1255 6 1 3.9486 0.4309 -0.8652 7 6 4.1201 2.5616 -0.5558 8 6 5.6187 2.4934 -0.8521 9 7 6.3300 1.8695 0.2566 10 6 7.7744 2.0922 0.3579 11 6 5.7485 1.1083 1.1844 12 8 6.4495 0.6078 2.0382 13 6 4.2718 0.8385 1.2290 14 6 2.1974 -1.2688 0.0006 15 1 3.2730 -1.0972 0.0437 16 6 1.7329 -2.1776 1.1659 17 7 2.0419 -3.5488 0.7214 18 6 2.2498 -4.6258 1.5412 19 1 2.1928 -4.5074 2.6132 20 6 2.5349 -5.8694 0.9945 21 7 2.6049 -6.0136 -0.3119 22 14 2.8192 -7.3384 2.1128 23 1 2.6862 -6.9148 3.5298 24 1 1.8143 -8.3901 1.8137 25 1 4.1836 -7.8781 1.8839 26 6 2.0892 -3.5687 -0.7479 27 6 1.8206 -2.1290 -1.2346 28 1 0.7696 -1.9988 -1.4924 29 8 2.6561 -1.8076 -2.3484 30 1 -0.3633 0.0867 1.0241 31 1 -0.3632 0.8436 -0.5870 32 1 -0.3634 -0.9301 -0.4370 33 1 3.5838 2.8720 -1.4526 34 1 3.9355 3.2762 0.2463 35 1 5.7807 1.9095 -1.7582 36 1 6.0030 3.5026 -1.0004 37 1 7.9638 2.9806 0.9603 38 1 8.2433 1.2277 0.8281 39 1 8.1910 2.2338 -0.6394 40 1 3.8140 1.4552 2.0024 41 1 4.1030 -0.2135 1.4592 42 1 0.6615 -2.0647 1.3311 43 1 2.2849 -1.9403 2.0753 44 1 2.8037 -6.8828 -0.6940 45 1 3.0737 -3.8956 -1.0828 46 1 1.3239 -4.2418 -1.1344 47 1 2.5135 -2.3698 -3.1221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047433260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:53 Heat of formation + Delta-G solvation = -78.087006 kcal Electronic energy + Delta-G solvation = -29763.199941 eV Core-core repulsion = 25754.274762 eV Total energy + Delta-G solvation = -4008.925179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.97511 -39.72432 -38.14671 -36.41711 -35.29776 -34.72423 -34.21323 -31.83976 -30.01812 -28.62781 -28.14096 -27.32243 -26.50347 -24.69439 -24.40608 -22.74111 -20.88527 -20.54558 -19.04736 -18.64250 -17.64291 -17.20620 -16.63257 -16.53635 -16.37257 -15.98710 -15.51773 -15.08697 -14.85621 -14.37738 -14.24345 -14.19351 -13.84125 -13.41851 -13.16429 -12.91356 -12.80206 -12.72367 -12.52001 -12.45954 -12.24097 -11.94111 -11.81825 -11.75865 -11.56038 -11.35593 -11.14972 -11.07906 -10.91879 -10.87057 -10.27882 -10.17410 -10.06691 -9.91241 -9.48736 -9.39055 -8.86506 -8.78927 -8.46211 -7.01117 -5.84096 -3.19541 2.54793 2.64596 2.88407 3.02231 3.34949 3.41493 3.43280 4.22437 4.37781 4.44538 4.46832 4.51009 4.62443 4.90285 5.03738 5.08448 5.10230 5.19181 5.22286 5.31133 5.39235 5.42316 5.46159 5.49008 5.56277 5.63871 5.64833 5.71557 5.74223 5.76571 5.82867 5.94958 5.98128 6.00226 6.22491 6.36220 6.49624 6.61655 7.23867 7.30079 7.37459 7.46228 7.65996 8.01842 8.08172 8.08303 8.19893 9.06551 9.66613 10.27947 11.27435 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.004177 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.076748 B = 6702.500244 C = 7871.805926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.527 3.473 4 O -0.546 6.546 5 C -0.114 4.114 6 H 0.110 0.890 7 C -0.113 4.113 8 C 0.114 3.886 9 N -0.610 5.610 10 C 0.077 3.923 11 C 0.523 3.477 12 O -0.547 6.547 13 C -0.127 4.127 14 C 0.121 3.879 15 H 0.110 0.890 16 C 0.130 3.870 17 N -0.598 5.598 18 C -0.231 4.231 19 H 0.082 0.918 20 C -0.004 4.004 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.151 3.849 27 C 0.064 3.936 28 H 0.060 0.940 29 O -0.566 6.566 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.030 0.970 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 16.238 -5.021 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.328 5.328 3 C 0.315 3.685 4 O -0.424 6.424 5 C -0.136 4.136 6 H 0.128 0.872 7 C -0.151 4.151 8 C -0.009 4.009 9 N -0.344 5.344 10 C -0.066 4.066 11 C 0.311 3.689 12 O -0.425 6.425 13 C -0.167 4.167 14 C 0.017 3.983 15 H 0.128 0.872 16 C 0.003 3.997 17 N -0.326 5.326 18 C -0.359 4.359 19 H 0.100 0.900 20 C -0.201 4.201 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.025 3.975 27 C 0.003 3.997 28 H 0.077 0.923 29 O -0.371 6.371 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.674 16.748 -4.126 17.454 hybrid contribution -0.173 -1.435 -0.029 1.446 sum 2.501 15.312 -4.155 16.062 Atomic orbital electron populations 1.21617 0.79309 1.02730 1.02033 1.47790 1.06995 1.05870 1.72139 1.20300 0.89316 0.83126 0.75769 1.90665 1.70318 1.31189 1.50210 1.21485 0.92631 1.00326 0.99146 0.87152 1.21697 0.93806 0.95794 1.03843 1.21478 0.92110 0.98331 0.88938 1.47243 1.09283 1.50274 1.27582 1.21695 0.80374 1.02530 1.01959 1.19941 0.90402 0.77634 0.80898 1.90734 1.63491 1.50251 1.38043 1.21728 0.91610 1.05735 0.97619 1.22680 0.97370 0.82257 0.96027 0.87243 1.21806 0.98049 0.85516 0.94361 1.44234 1.83542 1.03176 1.01654 1.19119 1.41628 0.85926 0.89254 0.89989 1.24806 1.01456 0.97738 0.96085 1.69924 1.55023 1.23086 1.08938 0.86006 0.77534 0.82439 0.79557 1.20345 1.21670 1.21597 1.21876 1.02027 0.89175 0.84387 1.23601 0.92768 0.97371 0.85950 0.92256 1.86382 1.64410 1.61221 1.25091 0.92486 0.91141 0.90717 0.89078 0.90025 0.91173 0.90224 0.92742 0.90030 0.91257 0.87654 0.86981 0.95239 0.93115 0.93630 0.92095 0.93269 0.77459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 8.95 59.85 0.54 1.66 16 2 N -0.60 -8.76 2.91 -171.47 -0.50 -9.26 16 3 C 0.53 7.68 6.83 -10.99 -0.08 7.60 16 4 O -0.55 -9.06 15.89 5.56 0.09 -8.97 16 5 C -0.11 -1.42 1.70 -91.56 -0.16 -1.57 16 6 H 0.11 1.43 7.04 -51.93 -0.37 1.06 16 7 C -0.11 -1.13 4.66 -26.60 -0.12 -1.25 16 8 C 0.11 0.97 6.32 -4.49 -0.03 0.94 16 9 N -0.61 -6.90 3.21 -182.85 -0.59 -7.48 16 10 C 0.08 0.73 10.24 59.85 0.61 1.35 16 11 C 0.52 7.54 7.47 -11.87 -0.09 7.45 16 12 O -0.55 -9.96 16.18 5.56 0.09 -9.87 16 13 C -0.13 -1.68 5.07 -28.10 -0.14 -1.83 16 14 C 0.12 2.00 2.57 -65.78 -0.17 1.83 16 15 H 0.11 1.85 4.48 -51.93 -0.23 1.61 16 16 C 0.13 2.49 6.80 -2.53 -0.02 2.47 16 17 N -0.60 -14.26 3.39 -170.07 -0.58 -14.84 16 18 C -0.23 -6.16 10.28 -15.06 -0.15 -6.32 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -25.81 10.31 55.49 0.57 -25.23 16 22 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.15 3.35 5.15 -3.06 -0.02 3.33 16 27 C 0.06 1.09 3.87 -24.89 -0.10 0.99 16 28 H 0.06 0.95 6.37 -51.93 -0.33 0.62 16 29 O -0.57 -8.84 13.39 -35.23 -0.47 -9.31 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 32 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.93 7.13 -51.92 -0.37 0.56 16 39 H 0.07 0.47 8.01 -51.93 -0.42 0.06 16 40 H 0.11 1.33 8.09 -51.93 -0.42 0.91 16 41 H 0.11 1.64 6.46 -51.93 -0.34 1.30 16 42 H 0.03 0.55 7.06 -51.93 -0.37 0.19 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.06 1.53 7.29 -51.93 -0.38 1.15 16 46 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 47 H 0.38 4.60 9.11 45.56 0.42 5.02 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -33.47 367.16 -7.31 -40.78 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.42 Total: 5.71 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -0.01 Total: 16.44 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -1.09 Total: -56.81 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.29 Total: -28.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.47 -7.31 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047433260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.307 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds