Wall clock time and date at job start Fri Apr 10 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00325 * 2 1 4 4 O 1.21281 * 120.00108 * 5.52690 * 3 2 1 5 5 C 1.50701 * 120.00022 * 185.51980 * 3 2 1 6 6 H 1.09007 * 109.67278 * 41.12172 * 5 3 2 7 7 C 1.53340 * 109.67461 * 161.61920 * 5 3 2 8 8 C 1.52916 * 108.67826 * 187.26761 * 7 5 3 9 9 N 1.45755 * 110.48555 * 309.24855 * 8 7 5 10 10 C 1.46504 * 117.94479 * 199.07565 * 9 8 7 11 11 C 1.33350 * 124.11068 * 19.09082 * 9 8 7 12 12 O 1.21279 * 118.25163 * 177.77426 * 11 9 8 13 13 C 1.50182 * 123.50198 * 357.73960 * 11 9 8 14 14 C 1.46501 * 119.99760 * 179.97438 * 2 1 3 15 15 H 1.08997 * 110.91924 * 182.43327 * 14 2 1 16 16 C 1.54911 * 111.00398 * 306.33773 * 14 2 1 17 17 N 1.47427 * 104.83258 * 155.08522 * 16 14 2 18 18 C 1.36929 * 125.65252 * 155.89592 * 17 16 14 19 19 H 1.08004 * 119.99786 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00361 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00376 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46781 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47194 * 119.99169 * 22 20 18 25 25 H 1.48494 * 109.47377 * 239.99483 * 22 20 18 26 26 C 1.47023 * 108.70195 * 335.86792 * 17 16 14 27 27 C 1.54333 * 107.27273 * 1.06265 * 26 17 16 28 28 H 1.09000 * 110.71861 * 263.65228 * 27 26 17 29 29 O 1.42896 * 110.72204 * 140.55440 * 27 26 17 30 30 H 1.09005 * 109.46989 * 274.83726 * 1 2 3 31 31 H 1.09005 * 109.46504 * 34.83014 * 1 2 3 32 32 H 1.08997 * 109.47473 * 154.83387 * 1 2 3 33 33 H 1.09003 * 109.60148 * 307.02238 * 7 5 3 34 34 H 1.09001 * 109.60288 * 67.34388 * 7 5 3 35 35 H 1.09005 * 109.30260 * 69.55852 * 8 7 5 36 36 H 1.09003 * 109.30574 * 189.14141 * 8 7 5 37 37 H 1.08996 * 109.47650 * 90.00152 * 10 9 8 38 38 H 1.09009 * 109.47005 * 210.00020 * 10 9 8 39 39 H 1.09002 * 109.47031 * 329.99283 * 10 9 8 40 40 H 1.09000 * 109.41264 * 257.48147 * 13 11 9 41 41 H 1.09003 * 109.38508 * 137.73563 * 13 11 9 42 42 H 1.08992 * 110.36808 * 36.24507 * 16 14 2 43 43 H 1.08995 * 110.36798 * 273.91616 * 16 14 2 44 44 H 0.97002 * 120.00456 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.88382 * 120.47731 * 26 17 16 46 46 H 1.09000 * 109.88517 * 241.49412 * 26 17 16 47 47 H 0.96699 * 114.00053 * 61.45567 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5368 2.2151 0.1012 5 6 3.6407 1.1701 -0.1255 6 1 3.9486 0.4309 -0.8652 7 6 4.1201 2.5616 -0.5558 8 6 5.6187 2.4934 -0.8521 9 7 6.3300 1.8695 0.2566 10 6 7.7744 2.0922 0.3579 11 6 5.7485 1.1083 1.1844 12 8 6.4495 0.6078 2.0382 13 6 4.2718 0.8385 1.2290 14 6 2.1974 -1.2688 0.0006 15 1 3.2730 -1.0972 0.0437 16 6 1.7329 -2.1776 1.1659 17 7 2.0419 -3.5488 0.7214 18 6 2.2498 -4.6258 1.5412 19 1 2.1928 -4.5074 2.6132 20 6 2.5349 -5.8694 0.9945 21 7 2.6049 -6.0136 -0.3119 22 14 2.8192 -7.3384 2.1128 23 1 2.6862 -6.9148 3.5298 24 1 1.8143 -8.3901 1.8137 25 1 4.1836 -7.8781 1.8839 26 6 2.0892 -3.5687 -0.7479 27 6 1.8206 -2.1290 -1.2346 28 1 0.7696 -1.9988 -1.4924 29 8 2.6561 -1.8076 -2.3484 30 1 -0.3633 0.0867 1.0241 31 1 -0.3632 0.8436 -0.5870 32 1 -0.3634 -0.9301 -0.4370 33 1 3.5838 2.8720 -1.4526 34 1 3.9355 3.2762 0.2463 35 1 5.7807 1.9095 -1.7582 36 1 6.0030 3.5026 -1.0004 37 1 7.9638 2.9806 0.9603 38 1 8.2433 1.2277 0.8281 39 1 8.1910 2.2338 -0.6394 40 1 3.8140 1.4552 2.0024 41 1 4.1030 -0.2135 1.4592 42 1 0.6615 -2.0647 1.3311 43 1 2.2849 -1.9403 2.0753 44 1 2.8037 -6.8828 -0.6940 45 1 3.0737 -3.8956 -1.0828 46 1 1.3239 -4.2418 -1.1344 47 1 2.5135 -2.3698 -3.1221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047433260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:52 Heat of formation + Delta-G solvation = -103.440230 kcal Electronic energy + Delta-G solvation = -29764.299339 eV Core-core repulsion = 25754.274762 eV Total energy + Delta-G solvation = -4010.024577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.06368 -40.91312 -39.57451 -37.46391 -36.67330 -36.24558 -35.17845 -33.69370 -30.92587 -30.28793 -29.25420 -28.84138 -27.52147 -26.31103 -25.51402 -23.71805 -22.41458 -22.14455 -20.20630 -19.66852 -19.02540 -18.83735 -17.76411 -17.67521 -17.53905 -17.05025 -16.88668 -16.42028 -16.24215 -15.79969 -15.60748 -15.28052 -15.06312 -14.57293 -14.49253 -14.38730 -14.14083 -14.00568 -13.63180 -13.60434 -13.30658 -13.15296 -13.06139 -12.93105 -12.82383 -12.76638 -12.68308 -12.60433 -12.11462 -12.02655 -11.99071 -11.88089 -11.65569 -11.33894 -10.92120 -10.76855 -10.61244 -9.76304 -9.74798 -8.95371 -7.88516 -5.25060 1.40469 1.46455 1.48048 1.51900 1.57274 1.83828 1.99978 2.47555 3.11086 3.14978 3.34575 3.50748 3.54437 3.59393 3.66639 3.80075 3.88810 4.00590 4.17925 4.20144 4.33204 4.34732 4.43797 4.45198 4.48931 4.56840 4.61545 4.62146 4.69788 4.75230 4.81659 4.88752 4.95272 4.95810 5.05485 5.17608 5.36165 5.39627 5.42028 5.46151 5.68545 6.12817 6.26169 6.34460 6.83525 7.02100 7.03827 7.05717 7.70088 8.31169 9.21086 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.004177 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.076748 B = 6702.500244 C = 7871.805926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.596 5.596 3 C 0.529 3.471 4 O -0.562 6.562 5 C -0.108 4.108 6 H 0.107 0.893 7 C -0.108 4.108 8 C 0.113 3.887 9 N -0.604 5.604 10 C 0.073 3.927 11 C 0.516 3.484 12 O -0.597 6.597 13 C -0.121 4.121 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.128 3.872 17 N -0.619 5.619 18 C -0.243 4.243 19 H 0.084 0.916 20 C -0.058 4.058 21 N -0.947 5.947 22 Si 0.974 3.026 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.161 3.839 27 C 0.084 3.916 28 H 0.079 0.921 29 O -0.565 6.565 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.248 0.752 45 H 0.025 0.975 46 H 0.020 0.980 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 18.287 -5.891 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.327 5.327 3 C 0.318 3.682 4 O -0.441 6.441 5 C -0.129 4.129 6 H 0.126 0.874 7 C -0.146 4.146 8 C -0.009 4.009 9 N -0.336 5.336 10 C -0.069 4.069 11 C 0.305 3.695 12 O -0.479 6.479 13 C -0.161 4.161 14 C 0.034 3.966 15 H 0.124 0.876 16 C 0.001 3.999 17 N -0.347 5.347 18 C -0.371 4.371 19 H 0.102 0.898 20 C -0.251 4.251 21 N -0.596 5.596 22 Si 0.803 3.197 23 H -0.192 1.192 24 H -0.217 1.217 25 H -0.221 1.221 26 C 0.035 3.965 27 C 0.023 3.977 28 H 0.096 0.904 29 O -0.372 6.372 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.038 0.962 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.600 18.854 -5.035 19.687 hybrid contribution -0.171 -2.006 0.217 2.025 sum 2.428 16.848 -4.817 17.690 Atomic orbital electron populations 1.21751 0.78284 1.03375 1.02652 1.47773 1.07638 1.05139 1.72113 1.20595 0.90044 0.82601 0.74990 1.90662 1.70896 1.31581 1.50976 1.21467 0.91047 1.02040 0.98369 0.87446 1.21707 0.94949 0.93809 1.04168 1.21733 0.90837 1.00225 0.88075 1.47393 1.10266 1.48844 1.27113 1.21852 0.79168 1.01881 1.04011 1.20100 0.90526 0.77813 0.81062 1.90708 1.64442 1.52532 1.40224 1.21614 0.91424 1.04666 0.98441 1.22284 0.97304 0.82573 0.94401 0.87556 1.21932 0.98657 0.83881 0.95384 1.44463 1.83457 1.04446 1.02313 1.19454 1.40740 0.87049 0.89883 0.89845 1.25554 1.02070 1.00156 0.97355 1.70115 1.56136 1.23097 1.10224 0.85076 0.76788 0.79360 0.78513 1.19203 1.21686 1.22114 1.21638 0.99004 0.92051 0.83774 1.23287 0.93954 0.93876 0.86608 0.90358 1.86352 1.64227 1.61393 1.25272 0.91957 0.90396 0.90134 0.87870 0.90358 0.89671 0.86833 0.91529 0.92551 0.87883 0.87265 0.88826 0.93954 0.93232 0.94242 0.95717 0.96159 0.75535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 8.95 127.77 1.14 3.10 16 2 N -0.60 -16.41 2.91 -814.81 -2.37 -18.78 16 3 C 0.53 14.39 6.83 87.66 0.60 14.98 16 4 O -0.56 -17.41 15.89 -3.03 -0.05 -17.46 16 5 C -0.11 -2.48 1.70 -11.40 -0.02 -2.50 16 6 H 0.11 2.58 7.04 -2.38 -0.02 2.56 16 7 C -0.11 -1.84 4.66 30.68 0.14 -1.70 16 8 C 0.11 1.50 6.32 86.49 0.55 2.05 16 9 N -0.60 -12.48 3.21 -851.59 -2.73 -15.21 16 10 C 0.07 1.24 10.24 127.77 1.31 2.55 16 11 C 0.52 14.72 7.47 87.72 0.66 15.38 16 12 O -0.60 -22.31 16.18 -3.03 -0.05 -22.36 16 13 C -0.12 -3.17 5.07 29.71 0.15 -3.02 16 14 C 0.14 4.46 2.57 46.38 0.12 4.58 16 15 H 0.11 3.53 4.48 -2.39 -0.01 3.52 16 16 C 0.13 4.84 6.80 86.86 0.59 5.43 16 17 N -0.62 -29.92 3.39 -691.98 -2.35 -32.27 16 18 C -0.24 -13.10 10.28 84.03 0.86 -12.24 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 20 C -0.06 -3.18 5.49 84.86 0.47 -2.72 16 21 N -0.95 -54.47 10.31 21.65 0.22 -54.25 16 22 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 C 0.16 7.29 5.15 86.73 0.45 7.74 16 27 C 0.08 2.77 3.87 31.79 0.12 2.89 16 28 H 0.08 2.35 6.37 -2.39 -0.02 2.34 16 29 O -0.56 -16.70 13.39 -148.98 -2.00 -18.69 16 30 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.08 1.79 7.66 -2.38 -0.02 1.77 16 32 H 0.08 1.85 6.34 -2.39 -0.02 1.83 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 35 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.11 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.27 7.13 -2.38 -0.02 1.26 16 39 H 0.10 1.05 8.01 -2.39 -0.02 1.03 16 40 H 0.11 2.72 8.09 -2.39 -0.02 2.70 16 41 H 0.09 2.79 6.46 -2.39 -0.02 2.77 16 42 H 0.04 1.52 7.06 -2.39 -0.02 1.51 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.02 1.28 7.29 -2.39 -0.02 1.27 16 46 H 0.02 1.02 7.50 -2.39 -0.02 1.00 16 47 H 0.39 8.95 9.11 -74.06 -0.67 8.27 16 Total: -1.00 -73.97 367.16 0.16 -73.81 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.32 Total: 21.79 kcal Atomic # 6 Polarization: 29.39 SS G_CDS: 7.14 Total: 36.52 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -7.23 Total: -120.50 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -2.09 Total: -58.52 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.97 0.16 -73.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047433260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.628 kcal (2) G-P(sol) polarization free energy of solvation -73.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds