Wall clock time and date at job start Fri Apr 10 2020 18:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 119.99783 * 2 1 4 4 N 1.34770 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.47025 * 125.64984 * 359.96165 * 4 2 1 6 6 C 1.54324 * 107.27145 * 178.97673 * 5 4 2 7 7 C 1.55161 * 102.94229 * 337.80267 * 6 5 4 8 8 C 1.47425 * 125.64683 * 179.97438 * 4 2 1 9 9 H 1.09000 * 110.45689 * 85.21193 * 8 4 2 10 10 C 1.50699 * 110.37096 * 322.93391 * 8 4 2 11 11 O 1.21282 * 119.99817 * 344.59025 * 10 8 4 12 12 N 1.34770 * 120.00111 * 164.59076 * 10 8 4 13 13 C 1.46499 * 120.00252 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47745 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.70646 * 59.22836 * 14 13 12 16 16 C 1.53293 * 109.68676 * 179.77463 * 14 13 12 17 17 O 1.42957 * 109.22558 * 172.02581 * 16 14 13 18 18 C 1.42961 * 114.16669 * 297.41775 * 17 16 14 19 19 C 1.53294 * 109.22467 * 62.57818 * 18 17 16 20 20 N 1.47150 * 108.38501 * 307.70158 * 19 18 17 21 21 C 1.36937 * 120.97961 * 230.51297 * 20 19 18 22 22 H 1.08000 * 120.00146 * 149.00846 * 21 20 19 23 23 C 1.38814 * 120.00150 * 329.00469 * 21 20 19 24 24 N 1.31620 * 120.00045 * 349.08186 * 23 21 20 25 25 Si 1.86802 * 120.00173 * 169.08448 * 23 21 20 26 26 H 1.48499 * 109.47195 * 59.99665 * 25 23 21 27 27 H 1.48498 * 109.47041 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46724 * 300.00059 * 25 23 21 29 29 H 1.08997 * 109.46965 * 240.00149 * 1 2 3 30 30 H 1.09002 * 109.46907 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.47027 * 119.99594 * 1 2 3 32 32 H 1.08998 * 109.87968 * 59.55645 * 5 4 2 33 33 H 1.08993 * 110.00646 * 298.46193 * 5 4 2 34 34 H 1.09007 * 110.71869 * 219.44772 * 6 5 4 35 35 H 1.08990 * 110.72173 * 96.16814 * 6 5 4 36 36 H 1.08998 * 111.00258 * 277.43038 * 7 6 5 37 37 H 1.08999 * 111.00200 * 153.57894 * 7 6 5 38 38 H 0.96996 * 120.00332 * 0.02562 * 12 10 8 39 39 H 1.09009 * 109.47099 * 59.99903 * 13 12 10 40 40 H 1.08996 * 109.47415 * 300.00455 * 13 12 10 41 41 H 1.09006 * 109.50524 * 291.94978 * 16 14 13 42 42 H 1.09000 * 109.51470 * 52.09893 * 16 14 13 43 43 H 1.09000 * 109.50956 * 302.65504 * 18 17 16 44 44 H 1.09004 * 109.51477 * 182.50548 * 18 17 16 45 45 H 1.09003 * 109.68384 * 187.97170 * 19 18 17 46 46 H 1.09008 * 109.71310 * 67.43904 * 19 18 17 47 47 H 0.96996 * 120.00422 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5747 -2.5066 0.0019 6 6 2.7281 -3.5315 -0.0243 7 6 3.9081 -2.7119 -0.6102 8 6 3.6480 -1.3122 0.0001 9 1 4.0359 -1.2641 1.0176 10 6 4.2806 -0.2425 -0.8524 11 8 3.6014 0.3935 -1.6304 12 7 5.6010 0.0073 -0.7503 13 6 6.2161 1.0468 -1.5794 14 6 7.7123 1.1270 -1.2702 15 1 8.1814 0.1640 -1.4715 16 6 8.3620 2.2097 -2.1394 17 8 9.7129 2.4062 -1.7152 18 6 9.8418 2.8774 -0.3717 19 6 9.2680 1.8290 0.5882 20 7 7.9076 1.4875 0.1431 21 6 6.8546 1.5043 1.0184 22 1 5.8637 1.7506 0.6664 23 6 7.0607 1.2048 2.3580 24 7 8.2108 0.6988 2.7499 25 14 5.7057 1.5197 3.6048 26 1 4.5040 0.7269 3.2406 27 1 6.1733 1.1185 4.9559 28 1 5.3629 2.9646 3.6088 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8901 32 1 0.9482 -2.6308 -0.8813 33 1 0.9768 -2.6444 0.9027 34 1 2.4826 -4.3720 -0.6736 35 1 2.9607 -3.8762 0.9832 36 1 3.8584 -2.6787 -1.6985 37 1 4.8655 -3.1120 -0.2764 38 1 6.1443 -0.5015 -0.1285 39 1 5.7488 2.0077 -1.3635 40 1 6.0749 0.8026 -2.6323 41 1 8.3501 1.8944 -3.1828 42 1 7.8079 3.1424 -2.0339 43 1 9.2931 3.8126 -0.2597 44 1 10.8948 3.0427 -0.1432 45 1 9.2323 2.2367 1.5985 46 1 9.8936 0.9365 0.5745 47 1 8.3547 0.4891 3.6859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051215258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:13 Heat of formation + Delta-G solvation = -76.166207 kcal Electronic energy + Delta-G solvation = -30018.275595 eV Core-core repulsion = 26009.433708 eV Total energy + Delta-G solvation = -4008.841887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36472 -38.76076 -37.90840 -36.98540 -35.18147 -33.47875 -32.03156 -31.44539 -30.46897 -29.87480 -28.71330 -27.14596 -25.46924 -23.59649 -23.38722 -21.90271 -21.42160 -20.30657 -19.66307 -18.74237 -17.35519 -16.80075 -16.52830 -15.83782 -15.60569 -15.31885 -15.06559 -14.62673 -14.55415 -14.30204 -14.23619 -13.83389 -13.74636 -13.43763 -13.16110 -13.05899 -12.74429 -12.64584 -12.42053 -12.34786 -11.93591 -11.80033 -11.59134 -11.46493 -11.35912 -11.01901 -10.88073 -10.81280 -10.68910 -10.37182 -10.21638 -9.98605 -9.62897 -9.51194 -9.28788 -8.93815 -8.60434 -8.42561 -8.10023 -6.68604 -5.86066 -3.34936 2.92591 3.02830 3.34353 3.37789 3.39123 3.47153 3.91224 4.38306 4.41482 4.48889 4.56917 4.77080 4.95632 5.16255 5.19640 5.22506 5.27711 5.31565 5.38998 5.40545 5.55770 5.61535 5.66727 5.76091 5.77353 5.82516 5.83155 5.90665 6.04012 6.06643 6.15396 6.20025 6.30539 6.36546 6.38077 6.56267 6.82421 7.11157 7.23918 7.51752 7.69618 7.79411 7.89944 8.31089 8.35492 8.52042 8.99867 9.11760 9.71292 10.29758 11.20507 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.004718 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.915008 B = 5933.611123 C = 6722.138181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.522 3.478 3 O -0.506 6.506 4 N -0.612 5.612 5 C 0.105 3.895 6 C -0.130 4.130 7 C -0.121 4.121 8 C 0.116 3.884 9 H 0.097 0.903 10 C 0.509 3.491 11 O -0.533 6.533 12 N -0.695 5.695 13 C 0.140 3.860 14 C 0.126 3.874 15 H 0.041 0.959 16 C 0.056 3.944 17 O -0.393 6.393 18 C 0.034 3.966 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.251 4.251 22 H 0.075 0.925 23 C 0.009 3.991 24 N -0.903 5.903 25 Si 0.897 3.103 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.412 0.588 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.029 0.971 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.333 -9.113 -5.403 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.310 3.690 3 O -0.379 6.379 4 N -0.350 5.350 5 C -0.019 4.019 6 C -0.168 4.168 7 C -0.159 4.159 8 C 0.009 3.991 9 H 0.115 0.885 10 C 0.293 3.707 11 O -0.410 6.410 12 N -0.348 5.348 13 C 0.016 3.984 14 C 0.019 3.981 15 H 0.058 0.942 16 C -0.023 4.023 17 O -0.312 6.312 18 C -0.043 4.043 19 C 0.019 3.981 20 N -0.316 5.316 21 C -0.380 4.380 22 H 0.093 0.907 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.727 3.273 26 H -0.208 1.208 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.249 0.751 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.047 0.953 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.348 -8.047 -5.893 13.670 hybrid contribution -0.641 -0.069 1.406 1.547 sum -9.989 -8.116 -4.487 13.630 Atomic orbital electron populations 1.21850 0.91903 1.05044 1.03501 1.20335 0.89978 0.82309 0.76387 1.90821 1.70085 1.30266 1.46733 1.48271 1.05338 1.05858 1.75495 1.21973 0.96310 0.82035 1.01536 1.22634 0.94397 0.97416 1.02357 1.22734 0.99607 0.92326 1.01247 1.21806 0.82133 0.94889 1.00282 0.88480 1.20145 0.82560 0.84228 0.83749 1.90658 1.61865 1.49868 1.38603 1.45834 1.08065 1.38244 1.42639 1.21092 0.92510 0.91982 0.92836 1.21421 0.92745 0.96161 0.87778 0.94195 1.22866 0.83797 0.98327 0.97335 1.87791 1.25679 1.87366 1.30317 1.23356 1.00125 0.97786 0.83075 1.21412 0.84941 0.94559 0.97221 1.44093 1.05192 1.79026 1.03307 1.19264 0.89500 1.40396 0.88854 0.90697 1.25102 0.96881 0.98734 0.98299 1.69976 1.23532 1.45464 1.15746 0.86444 0.81608 0.78711 0.80516 1.20777 1.21692 1.20965 0.89979 0.89222 0.89861 0.91487 0.91340 0.89702 0.90111 0.90146 0.88865 0.75096 0.91600 0.92677 0.89966 0.93514 0.94136 0.90265 0.88972 0.95295 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.51 36.01 0.34 -1.52 16 2 C 0.52 9.05 7.20 -10.99 -0.08 8.97 16 3 O -0.51 -11.73 14.47 -18.50 -0.27 -12.00 16 4 N -0.61 -9.24 3.14 -164.36 -0.52 -9.75 16 5 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 6 C -0.13 -1.09 6.95 -24.89 -0.17 -1.26 16 7 C -0.12 -1.37 6.49 -24.59 -0.16 -1.53 16 8 C 0.12 1.87 3.56 -67.58 -0.24 1.63 16 9 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 10 C 0.51 10.17 6.25 -10.99 -0.07 10.10 16 11 O -0.53 -12.36 13.77 -18.50 -0.25 -12.61 16 12 N -0.70 -13.76 3.80 -60.30 -0.23 -13.99 16 13 C 0.14 2.77 4.44 -4.04 -0.02 2.76 16 14 C 0.13 2.55 3.20 -67.42 -0.22 2.33 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 16 C 0.06 1.03 6.29 37.31 0.23 1.26 16 17 O -0.39 -7.85 10.74 -35.23 -0.38 -8.23 16 18 C 0.03 0.68 6.98 37.31 0.26 0.94 16 19 C 0.14 3.34 5.38 -3.54 -0.02 3.32 16 20 N -0.59 -13.99 3.03 -164.30 -0.50 -14.48 16 21 C -0.25 -6.47 7.11 -15.06 -0.11 -6.57 16 22 H 0.08 2.05 5.81 -52.49 -0.30 1.74 16 23 C 0.01 0.24 5.06 -17.43 -0.09 0.15 16 24 N -0.90 -24.63 11.13 55.49 0.62 -24.01 16 25 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.41 8.29 7.38 -40.82 -0.30 7.99 16 39 H 0.07 1.48 7.53 -51.92 -0.39 1.09 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.35 6.32 -51.93 -0.33 2.02 16 46 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 47 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -34.65 369.53 -8.98 -43.62 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.64 Total: 7.39 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: -0.35 Total: 21.58 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.63 Total: -62.24 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.90 Total: -32.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.65 -8.98 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051215258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.542 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds