Wall clock time and date at job start Fri Apr 10 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99711 * 2 1 4 4 H 1.08996 * 110.64463 * 26.85453 * 3 2 1 5 5 C 1.54329 * 110.71787 * 263.51784 * 3 2 1 6 6 N 1.47019 * 107.26944 * 219.44768 * 5 3 2 7 7 C 1.36946 * 125.64332 * 178.99170 * 6 5 3 8 8 H 1.07999 * 119.99557 * 174.78729 * 7 6 5 9 9 C 1.38806 * 120.00004 * 354.78219 * 7 6 5 10 10 N 1.31612 * 120.00403 * 7.05747 * 9 7 6 11 11 Si 1.86799 * 119.99652 * 187.05539 * 9 7 6 12 12 H 1.48502 * 109.47251 * 94.99360 * 11 9 7 13 13 H 1.48510 * 109.47237 * 214.98587 * 11 9 7 14 14 H 1.48493 * 109.47749 * 334.98967 * 11 9 7 15 15 C 1.47425 * 108.70642 * 358.94058 * 6 5 3 16 16 C 1.54908 * 104.83023 * 24.12845 * 15 6 5 17 17 H 1.09003 * 111.00065 * 81.06550 * 16 15 6 18 18 N 1.46499 * 111.03733 * 204.89799 * 16 15 6 19 19 C 1.34771 * 120.00145 * 270.39822 * 18 16 15 20 20 O 1.21280 * 120.00012 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99708 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.46795 * 180.02562 * 21 19 18 23 23 H 1.09004 * 110.43756 * 303.90638 * 22 21 19 24 24 C 1.54631 * 110.48534 * 181.22643 * 22 21 19 25 25 C 1.54479 * 101.76661 * 266.11454 * 24 22 21 26 26 N 1.46767 * 105.47572 * 334.58776 * 25 24 22 27 27 C 1.46495 * 124.35408 * 196.99564 * 26 25 24 28 28 C 1.34425 * 111.29699 * 17.01125 * 26 25 24 29 29 O 1.21283 * 124.93970 * 179.63328 * 28 26 25 30 30 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47131 * 300.00138 * 1 2 3 32 32 H 1.08996 * 109.47073 * 60.00047 * 1 2 3 33 33 H 1.08996 * 109.88213 * 338.86651 * 5 3 2 34 34 H 1.09004 * 109.88016 * 100.03381 * 5 3 2 35 35 H 0.97000 * 120.00448 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.36500 * 265.29340 * 15 6 5 37 37 H 1.08996 * 110.36242 * 142.96959 * 15 6 5 38 38 H 0.97004 * 119.99419 * 90.39564 * 18 16 15 39 39 H 1.08998 * 109.46917 * 299.99235 * 21 19 18 40 40 H 1.08992 * 109.47246 * 59.99699 * 21 19 18 41 41 H 1.08998 * 110.96935 * 24.23902 * 24 22 21 42 42 H 1.09005 * 110.97179 * 147.99874 * 24 22 21 43 43 H 1.08989 * 110.25085 * 215.58431 * 25 24 22 44 44 H 1.08999 * 110.24409 * 93.57991 * 25 24 22 45 45 H 1.08991 * 109.47256 * 179.97438 * 27 26 25 46 46 H 1.09006 * 109.46479 * 299.99508 * 27 26 25 47 47 H 1.08998 * 109.46945 * 59.99149 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4607 5 6 2.3811 1.7380 -1.4343 6 7 3.6686 2.4438 -1.3581 7 6 4.3540 2.9704 -2.4203 8 1 5.2526 3.5452 -2.2515 9 6 3.8938 2.7654 -3.7137 10 7 2.7289 2.1864 -3.9138 11 14 4.9279 3.3114 -5.1704 12 1 5.7404 2.1676 -5.6571 13 1 4.0370 3.7847 -6.2603 14 1 5.8282 4.4157 -4.7523 15 6 4.0988 2.4918 0.0511 16 6 3.3816 1.2958 0.7256 17 1 3.9159 0.3642 0.5390 18 7 3.2167 1.5243 2.1633 19 6 4.1768 1.1298 3.0228 20 8 5.1772 0.5851 2.6062 21 6 4.0068 1.3643 4.5017 22 6 5.2301 0.8270 5.2472 23 1 5.3856 -0.2263 5.0140 24 6 5.0664 1.0283 6.7716 25 6 5.7843 2.3786 6.9900 26 7 6.7510 2.4903 5.8913 27 6 7.8863 3.4161 5.8801 28 6 6.4606 1.6342 4.8965 29 8 7.0935 1.5243 3.8677 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.4769 0.8600 -2.0731 34 1 1.6154 2.4052 -1.8299 35 1 2.4075 2.0428 -4.8176 36 1 3.7871 3.4295 0.5112 37 1 5.1802 2.3746 0.1217 38 1 2.4164 1.9596 2.4964 39 1 3.9071 2.4331 4.6909 40 1 3.1125 0.8485 4.8510 41 1 4.0136 1.0975 7.0450 42 1 5.5601 0.2299 7.3257 43 1 6.3018 2.3799 7.9492 44 1 5.0673 3.1984 6.9462 45 1 8.4437 3.2963 4.9512 46 1 7.5206 4.4403 5.9553 47 1 8.5394 3.2004 6.7257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081825811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:42 Heat of formation + Delta-G solvation = -73.731723 kcal Electronic energy + Delta-G solvation = -28724.187044 eV Core-core repulsion = 24715.450724 eV Total energy + Delta-G solvation = -4008.736320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81543 -39.34418 -37.98628 -36.40830 -35.84762 -33.97894 -33.78004 -31.73684 -30.00263 -28.67052 -27.26398 -26.96028 -26.08779 -25.61217 -24.02072 -21.76805 -20.74692 -20.43721 -19.87135 -19.38461 -17.50795 -16.87464 -16.54988 -16.46096 -16.02194 -15.83051 -15.44948 -14.80223 -14.67436 -14.40986 -14.19043 -13.99816 -13.69870 -13.59279 -13.25079 -13.18984 -12.83980 -12.65954 -12.54004 -12.47176 -12.21358 -12.03964 -11.83492 -11.50457 -11.46930 -11.18473 -11.13312 -10.97257 -10.76152 -10.68384 -10.09447 -9.93928 -9.74837 -9.69113 -9.42778 -9.02409 -8.83583 -8.65415 -8.47904 -6.82548 -5.69625 -3.02728 2.64157 2.88144 2.97587 3.35148 3.45398 3.50790 3.52138 4.14692 4.17411 4.19382 4.42726 4.56119 4.69713 4.81777 5.02379 5.04893 5.15960 5.17001 5.23441 5.25214 5.34555 5.43527 5.48643 5.52195 5.56276 5.58448 5.60729 5.69645 5.77346 5.80761 5.90733 5.94545 6.13854 6.24340 6.39499 6.64007 6.76300 6.96068 7.01184 7.29961 7.52644 7.76523 7.81303 7.91447 8.25619 8.26526 8.58867 9.22877 9.83163 10.47106 11.42351 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.003263 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.065803 B = 8580.063439 C =10173.969371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.921 5.921 11 Si 0.912 3.088 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.136 3.864 17 H 0.104 0.896 18 N -0.721 5.721 19 C 0.498 3.502 20 O -0.504 6.504 21 C -0.123 4.123 22 C -0.107 4.107 23 H 0.113 0.887 24 C -0.130 4.130 25 C 0.104 3.896 26 N -0.635 5.635 27 C 0.095 3.905 28 C 0.513 3.487 29 O -0.487 6.487 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.253 0.747 36 H 0.020 0.980 37 H 0.051 0.949 38 H 0.393 0.607 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -0.053 26.076 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.030 3.970 17 H 0.122 0.878 18 N -0.372 5.372 19 C 0.282 3.718 20 O -0.377 6.377 21 C -0.164 4.164 22 C -0.129 4.129 23 H 0.131 0.869 24 C -0.168 4.168 25 C -0.019 4.019 26 N -0.373 5.373 27 C -0.047 4.047 28 C 0.299 3.701 29 O -0.357 6.357 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.226 0.774 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.256 -0.630 24.942 24.982 hybrid contribution -0.257 0.877 -0.527 1.055 sum -1.513 0.248 24.415 24.463 Atomic orbital electron populations 1.22700 0.81866 1.01990 0.99671 1.87919 1.18967 1.27671 1.95035 1.23844 0.92999 0.83932 0.99497 0.92038 1.21559 0.88139 0.97300 0.89091 1.44263 1.21160 1.66550 1.00854 1.19091 1.05698 1.26716 0.84071 0.90162 1.24825 0.97328 1.00800 0.97306 1.69949 1.18413 1.48468 1.19999 0.86091 0.79307 0.78029 0.82317 1.21495 1.21802 1.20586 1.21823 0.98000 0.93763 0.86055 1.22329 0.96051 1.00891 0.77697 0.87790 1.45918 1.21961 1.62171 1.07194 1.20479 0.83566 0.79579 0.88165 1.90865 1.27403 1.40510 1.78922 1.21532 0.98592 1.03348 0.92929 1.21708 0.93734 1.02469 0.94976 0.86890 1.22694 1.02131 0.97132 0.94807 1.22017 0.91574 0.97926 0.90422 1.48214 1.28939 1.39921 1.20200 1.21502 0.87851 0.92102 1.03227 1.20758 0.85936 0.80421 0.82959 1.90840 1.53651 1.66536 1.24718 0.90290 0.94903 0.93704 0.91843 0.93644 0.93711 0.96236 0.93057 0.77403 0.88961 0.87831 0.88902 0.89662 0.90590 0.91295 0.89901 0.92349 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.59 16 2 O -0.38 -7.11 10.43 -35.23 -0.37 -7.48 16 3 C 0.06 1.09 3.08 -24.89 -0.08 1.02 16 4 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 5 C 0.16 4.12 5.16 -3.06 -0.02 4.11 16 6 N -0.60 -16.14 3.39 -170.07 -0.58 -16.72 16 7 C -0.23 -6.64 10.27 -15.06 -0.15 -6.80 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C -0.01 -0.18 5.48 -17.44 -0.10 -0.28 16 10 N -0.92 -27.59 10.36 55.49 0.57 -27.01 16 11 Si 0.91 22.85 29.56 -169.99 -5.02 17.83 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.13 3.00 6.93 -2.53 -0.02 2.98 16 16 C 0.14 2.69 3.09 -65.78 -0.20 2.49 16 17 H 0.10 2.38 7.63 -51.93 -0.40 1.99 16 18 N -0.72 -10.90 5.22 -51.73 -0.27 -11.17 16 19 C 0.50 7.72 7.61 -10.99 -0.08 7.64 16 20 O -0.50 -10.43 13.37 -16.68 -0.22 -10.66 16 21 C -0.12 -1.19 5.12 -27.88 -0.14 -1.33 16 22 C -0.11 -1.09 2.57 -90.63 -0.23 -1.32 16 23 H 0.11 1.29 8.02 -51.93 -0.42 0.88 16 24 C -0.13 -0.71 6.71 -25.10 -0.17 -0.88 16 25 C 0.10 0.62 7.35 -3.12 -0.02 0.59 16 26 N -0.64 -6.47 3.33 -180.29 -0.60 -7.07 16 27 C 0.10 0.83 11.14 59.84 0.67 1.50 16 28 C 0.51 7.20 6.98 -10.86 -0.08 7.12 16 29 O -0.49 -9.62 15.19 -16.68 -0.25 -9.87 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.81 7.21 -51.93 -0.37 1.43 16 34 H 0.05 1.22 7.61 -51.93 -0.40 0.82 16 35 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.39 4.52 8.54 -40.82 -0.35 4.17 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.29 7.90 -51.93 -0.41 -0.12 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.32 8.14 -51.94 -0.42 -0.11 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 46 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -38.82 380.44 -8.28 -47.10 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.75 Total: 0.89 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 0.47 Total: 18.43 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.87 Total: -61.97 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.84 Total: -28.01 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.82 -8.28 -47.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081825811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.631 kcal (2) G-P(sol) polarization free energy of solvation -38.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds