Wall clock time and date at job start Fri Apr 10 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99711 * 2 1 4 4 H 1.08996 * 110.64463 * 26.85453 * 3 2 1 5 5 C 1.54329 * 110.71787 * 263.51784 * 3 2 1 6 6 N 1.47019 * 107.26944 * 219.44768 * 5 3 2 7 7 C 1.36946 * 125.64332 * 178.99170 * 6 5 3 8 8 H 1.07999 * 119.99557 * 174.78729 * 7 6 5 9 9 C 1.38806 * 120.00004 * 354.78219 * 7 6 5 10 10 N 1.31612 * 120.00403 * 7.05747 * 9 7 6 11 11 Si 1.86799 * 119.99652 * 187.05539 * 9 7 6 12 12 H 1.48502 * 109.47251 * 94.99360 * 11 9 7 13 13 H 1.48510 * 109.47237 * 214.98587 * 11 9 7 14 14 H 1.48493 * 109.47749 * 334.98967 * 11 9 7 15 15 C 1.47425 * 108.70642 * 358.94058 * 6 5 3 16 16 C 1.54908 * 104.83023 * 24.12845 * 15 6 5 17 17 H 1.09003 * 111.00065 * 81.06550 * 16 15 6 18 18 N 1.46499 * 111.03733 * 204.89799 * 16 15 6 19 19 C 1.34771 * 120.00145 * 270.39822 * 18 16 15 20 20 O 1.21280 * 120.00012 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99708 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.46795 * 180.02562 * 21 19 18 23 23 H 1.09004 * 110.43756 * 303.90638 * 22 21 19 24 24 C 1.54631 * 110.48534 * 181.22643 * 22 21 19 25 25 C 1.54479 * 101.76661 * 266.11454 * 24 22 21 26 26 N 1.46767 * 105.47572 * 334.58776 * 25 24 22 27 27 C 1.46495 * 124.35408 * 196.99564 * 26 25 24 28 28 C 1.34425 * 111.29699 * 17.01125 * 26 25 24 29 29 O 1.21283 * 124.93970 * 179.63328 * 28 26 25 30 30 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47131 * 300.00138 * 1 2 3 32 32 H 1.08996 * 109.47073 * 60.00047 * 1 2 3 33 33 H 1.08996 * 109.88213 * 338.86651 * 5 3 2 34 34 H 1.09004 * 109.88016 * 100.03381 * 5 3 2 35 35 H 0.97000 * 120.00448 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.36500 * 265.29340 * 15 6 5 37 37 H 1.08996 * 110.36242 * 142.96959 * 15 6 5 38 38 H 0.97004 * 119.99419 * 90.39564 * 18 16 15 39 39 H 1.08998 * 109.46917 * 299.99235 * 21 19 18 40 40 H 1.08992 * 109.47246 * 59.99699 * 21 19 18 41 41 H 1.08998 * 110.96935 * 24.23902 * 24 22 21 42 42 H 1.09005 * 110.97179 * 147.99874 * 24 22 21 43 43 H 1.08989 * 110.25085 * 215.58431 * 25 24 22 44 44 H 1.08999 * 110.24409 * 93.57991 * 25 24 22 45 45 H 1.08991 * 109.47256 * 179.97438 * 27 26 25 46 46 H 1.09006 * 109.46479 * 299.99508 * 27 26 25 47 47 H 1.08998 * 109.46945 * 59.99149 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4607 5 6 2.3811 1.7380 -1.4343 6 7 3.6686 2.4438 -1.3581 7 6 4.3540 2.9704 -2.4203 8 1 5.2526 3.5452 -2.2515 9 6 3.8938 2.7654 -3.7137 10 7 2.7289 2.1864 -3.9138 11 14 4.9279 3.3114 -5.1704 12 1 5.7404 2.1676 -5.6571 13 1 4.0370 3.7847 -6.2603 14 1 5.8282 4.4157 -4.7523 15 6 4.0988 2.4918 0.0511 16 6 3.3816 1.2958 0.7256 17 1 3.9159 0.3642 0.5390 18 7 3.2167 1.5243 2.1633 19 6 4.1768 1.1298 3.0228 20 8 5.1772 0.5851 2.6062 21 6 4.0068 1.3643 4.5017 22 6 5.2301 0.8270 5.2472 23 1 5.3856 -0.2263 5.0140 24 6 5.0664 1.0283 6.7716 25 6 5.7843 2.3786 6.9900 26 7 6.7510 2.4903 5.8913 27 6 7.8863 3.4161 5.8801 28 6 6.4606 1.6342 4.8965 29 8 7.0935 1.5243 3.8677 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.4769 0.8600 -2.0731 34 1 1.6154 2.4052 -1.8299 35 1 2.4075 2.0428 -4.8176 36 1 3.7871 3.4295 0.5112 37 1 5.1802 2.3746 0.1217 38 1 2.4164 1.9596 2.4964 39 1 3.9071 2.4331 4.6909 40 1 3.1125 0.8485 4.8510 41 1 4.0136 1.0975 7.0450 42 1 5.5601 0.2299 7.3257 43 1 6.3018 2.3799 7.9492 44 1 5.0673 3.1984 6.9462 45 1 8.4437 3.2963 4.9512 46 1 7.5206 4.4403 5.9553 47 1 8.5394 3.2004 6.7257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081825811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:41 Heat of formation + Delta-G solvation = -104.172206 kcal Electronic energy + Delta-G solvation = -28725.507042 eV Core-core repulsion = 24715.450724 eV Total energy + Delta-G solvation = -4010.056318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73159 -40.71937 -39.45950 -37.51536 -37.39440 -35.56338 -34.63889 -33.68279 -31.05019 -30.25790 -28.83157 -27.81007 -27.51909 -26.65318 -25.71135 -22.67406 -22.22288 -22.00577 -21.36255 -20.28115 -19.18605 -18.26237 -17.89493 -17.47613 -17.19575 -16.98722 -16.77258 -16.35514 -15.85969 -15.82036 -15.66542 -15.15171 -15.04086 -14.80349 -14.54190 -14.31447 -14.13116 -14.00199 -13.66171 -13.42812 -13.30747 -13.21848 -13.06634 -13.01398 -12.81719 -12.79796 -12.57943 -12.30698 -12.09724 -12.07086 -11.91296 -11.77248 -11.63913 -10.92307 -10.79245 -10.60611 -10.46392 -10.02429 -9.60461 -9.00011 -7.92646 -5.29500 1.41298 1.45415 1.53543 1.65692 1.79080 2.12755 2.18832 2.43729 2.77613 3.26280 3.42177 3.52679 3.55806 3.79634 3.80400 3.91678 3.98453 4.11643 4.19545 4.33837 4.35268 4.46136 4.48276 4.53210 4.61205 4.64500 4.66269 4.71494 4.78219 4.79314 4.85615 4.89176 4.98100 5.00939 5.16614 5.26899 5.29868 5.36597 5.52336 5.61977 5.70239 6.10267 6.21297 6.32520 6.65746 7.01344 7.32434 7.44330 7.65612 8.28967 9.17284 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.003263 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.065803 B = 8580.063439 C =10173.969371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.081 3.919 4 H 0.101 0.899 5 C 0.173 3.827 6 N -0.622 5.622 7 C -0.253 4.253 8 H 0.078 0.922 9 C -0.058 4.058 10 N -0.944 5.944 11 Si 0.980 3.020 12 H -0.289 1.289 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.133 3.867 16 C 0.154 3.846 17 H 0.065 0.935 18 N -0.705 5.705 19 C 0.487 3.513 20 O -0.563 6.563 21 C -0.109 4.109 22 C -0.109 4.109 23 H 0.091 0.909 24 C -0.112 4.112 25 C 0.096 3.904 26 N -0.633 5.633 27 C 0.089 3.911 28 C 0.493 3.507 29 O -0.566 6.566 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.018 0.982 34 H 0.023 0.977 35 H 0.250 0.750 36 H 0.040 0.960 37 H 0.020 0.980 38 H 0.417 0.583 39 H 0.119 0.881 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 0.990 30.037 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.022 3.978 4 H 0.119 0.881 5 C 0.047 3.953 6 N -0.350 5.350 7 C -0.382 4.382 8 H 0.095 0.905 9 C -0.252 4.252 10 N -0.592 5.592 11 Si 0.807 3.193 12 H -0.216 1.216 13 H -0.212 1.212 14 H -0.193 1.193 15 C 0.006 3.994 16 C 0.046 3.954 17 H 0.083 0.917 18 N -0.359 5.359 19 C 0.275 3.725 20 O -0.440 6.440 21 C -0.149 4.149 22 C -0.131 4.131 23 H 0.109 0.891 24 C -0.149 4.149 25 C -0.025 4.025 26 N -0.368 5.368 27 C -0.053 4.053 28 C 0.281 3.719 29 O -0.443 6.443 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.254 0.746 39 H 0.137 0.863 40 H 0.171 0.829 41 H 0.151 0.849 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.589 0.450 29.021 29.246 hybrid contribution 0.481 0.549 -1.699 1.849 sum -3.108 0.999 27.323 27.517 Atomic orbital electron populations 1.23010 0.79163 1.03935 1.00896 1.87904 1.21935 1.26955 1.94913 1.23449 0.93469 0.85329 0.95572 0.88105 1.21324 0.86893 0.94730 0.92325 1.44528 1.22003 1.66475 1.01982 1.19420 1.06077 1.27251 0.85426 0.90454 1.25682 0.98493 1.01173 0.99831 1.70156 1.19608 1.49228 1.20241 0.85049 0.77773 0.77723 0.78709 1.21632 1.21154 1.19305 1.21883 0.96623 0.96005 0.84876 1.21680 0.95425 0.97528 0.80736 0.91721 1.45687 1.23156 1.62281 1.04789 1.21721 0.82190 0.77892 0.90722 1.90867 1.29794 1.43011 1.80321 1.21642 1.00101 1.05630 0.87514 1.21756 0.92176 1.00502 0.98678 0.89068 1.22765 1.04705 0.97033 0.90441 1.22429 0.91329 0.99016 0.89748 1.48468 1.29397 1.38551 1.20389 1.21610 0.88071 0.93096 1.02489 1.21613 0.86655 0.81132 0.82504 1.90793 1.56374 1.69094 1.28079 0.88153 0.91275 0.94744 0.96411 0.95899 0.94030 0.94253 0.96119 0.74588 0.86275 0.82917 0.84908 0.88795 0.88076 0.88937 0.93387 0.90274 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.72 10.43 -148.98 -1.55 -16.27 16 3 C 0.08 3.13 3.08 31.78 0.10 3.22 16 4 H 0.10 3.11 7.67 -2.39 -0.02 3.09 16 5 C 0.17 9.03 5.16 86.73 0.45 9.48 16 6 N -0.62 -34.99 3.39 -691.99 -2.35 -37.34 16 7 C -0.25 -15.39 10.27 84.03 0.86 -14.53 16 8 H 0.08 4.59 7.84 -2.91 -0.02 4.57 16 9 C -0.06 -3.49 5.48 84.86 0.46 -3.02 16 10 N -0.94 -58.70 10.36 21.65 0.22 -58.47 16 11 Si 0.98 48.24 29.56 68.60 2.03 50.27 16 12 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 C 0.13 6.33 6.93 86.85 0.60 6.93 16 16 C 0.15 6.22 3.09 46.38 0.14 6.36 16 17 H 0.06 3.16 7.63 -2.39 -0.02 3.14 16 18 N -0.71 -20.25 5.22 -435.97 -2.27 -22.52 16 19 C 0.49 14.77 7.61 87.66 0.67 15.44 16 20 O -0.56 -24.61 13.37 18.23 0.24 -24.37 16 21 C -0.11 -1.70 5.12 29.85 0.15 -1.54 16 22 C -0.11 -2.00 2.57 -10.80 -0.03 -2.03 16 23 H 0.09 2.07 8.02 -2.38 -0.02 2.05 16 24 C -0.11 -0.68 6.71 31.65 0.21 -0.46 16 25 C 0.10 0.69 7.35 86.83 0.64 1.33 16 26 N -0.63 -11.85 3.33 -842.91 -2.81 -14.66 16 27 C 0.09 1.50 11.14 127.77 1.42 2.92 16 28 C 0.49 13.98 6.98 87.90 0.61 14.60 16 29 O -0.57 -24.24 15.19 18.22 0.28 -23.96 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.02 1.07 7.21 -2.39 -0.02 1.05 16 34 H 0.02 1.27 7.61 -2.38 -0.02 1.26 16 35 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.42 7.95 8.54 -92.70 -0.79 7.16 16 39 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.13 -0.16 7.90 -2.39 -0.02 -0.18 16 42 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.05 1.14 7.53 -2.39 -0.02 1.12 16 46 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -96.80 380.44 1.49 -95.31 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.17 Total: 11.42 kcal Atomic # 6 Polarization: 33.06 SS G_CDS: 7.53 Total: 40.59 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -7.21 Total: -132.99 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -1.03 Total: -64.60 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -96.80 1.49 -95.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081825811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.859 kcal (2) G-P(sol) polarization free energy of solvation -96.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds