Wall clock time and date at job start Fri Apr 10 2020 18:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42910 * 113.99581 * 2 1 4 4 H 1.08994 * 110.64080 * 26.86102 * 3 2 1 5 5 C 1.54317 * 110.86979 * 263.60726 * 3 2 1 6 6 N 1.47020 * 107.27315 * 219.37416 * 5 3 2 7 7 C 1.36933 * 125.65411 * 179.00137 * 6 5 3 8 8 H 1.07998 * 120.00623 * 174.78761 * 7 6 5 9 9 C 1.38818 * 119.99669 * 354.78447 * 7 6 5 10 10 N 1.31612 * 120.00240 * 7.05045 * 9 7 6 11 11 Si 1.86803 * 119.99889 * 187.05505 * 9 7 6 12 12 H 1.48497 * 109.47062 * 94.98565 * 11 9 7 13 13 H 1.48495 * 109.47000 * 214.98350 * 11 9 7 14 14 H 1.48500 * 109.47204 * 334.98614 * 11 9 7 15 15 C 1.47474 * 108.71965 * 358.97936 * 6 5 3 16 16 C 1.54903 * 104.81230 * 24.07143 * 15 6 5 17 17 H 1.08993 * 111.00597 * 81.13150 * 16 15 6 18 18 N 1.46498 * 111.00391 * 204.95160 * 16 15 6 19 19 C 1.34779 * 119.99980 * 270.41494 * 18 16 15 20 20 O 1.21280 * 119.99670 * 359.97438 * 19 18 16 21 21 C 1.50692 * 120.00158 * 179.72562 * 19 18 16 22 22 H 1.09000 * 110.88676 * 59.57343 * 21 19 18 23 23 C 1.55164 * 111.00536 * 183.45358 * 21 19 18 24 24 C 1.54321 * 102.93971 * 153.57538 * 23 21 19 25 25 N 1.47026 * 107.27712 * 337.80855 * 24 23 21 26 26 C 1.34769 * 125.65283 * 178.99377 * 25 24 23 27 27 C 1.50701 * 120.00103 * 359.97438 * 26 25 24 28 28 O 1.21273 * 120.00267 * 179.97438 * 26 25 24 29 29 C 1.47468 * 108.71623 * 358.97640 * 25 24 23 30 30 H 1.08997 * 109.46784 * 299.99871 * 1 2 3 31 31 H 1.08993 * 109.46854 * 60.00155 * 1 2 3 32 32 H 1.09001 * 109.46793 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.89109 * 338.79272 * 5 3 2 34 34 H 1.09003 * 109.88169 * 99.96431 * 5 3 2 35 35 H 0.96995 * 120.00335 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.34672 * 265.25247 * 15 6 5 37 37 H 1.09000 * 110.40599 * 142.91765 * 15 6 5 38 38 H 0.97002 * 120.00341 * 90.42064 * 18 16 15 39 39 H 1.08996 * 110.71752 * 271.93751 * 23 21 19 40 40 H 1.08999 * 110.71375 * 35.21450 * 23 21 19 41 41 H 1.09005 * 109.88238 * 97.22648 * 24 23 21 42 42 H 1.09002 * 109.87862 * 218.39108 * 24 23 21 43 43 H 1.09003 * 109.47487 * 59.98888 * 27 26 25 44 44 H 1.08997 * 109.47800 * 179.97438 * 27 26 25 45 45 H 1.09007 * 109.46690 * 300.00131 * 27 26 25 46 46 H 1.09006 * 110.35007 * 265.25029 * 29 25 24 47 47 H 1.09003 * 110.40279 * 142.92056 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3805 1.7425 -1.4330 6 7 3.6668 2.4501 -1.3550 7 6 4.3514 2.9809 -2.4155 8 1 5.2492 3.5565 -2.2452 9 6 3.8915 2.7789 -3.7096 10 7 2.7275 2.1987 -3.9113 11 14 4.9247 3.3307 -5.1648 12 1 5.7390 2.1896 -5.6546 13 1 4.0330 3.8057 -6.2531 14 1 5.8233 4.4352 -4.7434 15 6 4.0980 2.4943 0.0547 16 6 3.3817 1.2959 0.7256 17 1 3.9169 0.3653 0.5369 18 7 3.2165 1.5211 2.1637 19 6 4.1771 1.1258 3.0225 20 8 5.1780 0.5832 2.6047 21 6 4.0099 1.3630 4.5012 22 1 3.1158 0.8648 4.8761 23 6 5.2699 0.9070 5.2836 24 6 5.2341 1.7959 6.5446 25 7 4.4227 2.9788 6.2221 26 6 4.1348 3.9881 7.0674 27 6 4.6598 3.9611 8.4798 28 8 3.4533 4.9182 6.6916 29 6 3.9762 2.8784 4.8202 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.4776 0.8666 -2.0743 34 1 1.6138 2.4098 -1.8268 35 1 2.4063 2.0573 -4.8155 36 1 3.7856 3.4305 0.5174 37 1 5.1794 2.3777 0.1251 38 1 2.4157 1.9546 2.4979 39 1 5.1965 -0.1468 5.5524 40 1 6.1732 1.0963 4.7037 41 1 4.7801 1.2490 7.3709 42 1 6.2458 2.1018 6.8112 43 1 5.7493 3.9350 8.4621 44 1 4.3266 4.8541 9.0085 45 1 4.2835 3.0745 8.9903 46 1 4.6593 3.4193 4.1651 47 1 2.9627 3.2657 4.7156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082347711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:04 Heat of formation + Delta-G solvation = -80.911475 kcal Electronic energy + Delta-G solvation = -28400.525341 eV Core-core repulsion = 24391.477685 eV Total energy + Delta-G solvation = -4009.047657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66014 -39.56209 -38.31954 -37.17705 -35.91055 -34.12037 -32.53657 -31.71589 -30.15039 -29.41563 -28.60765 -27.08052 -26.13533 -24.56243 -23.97010 -22.46445 -20.58916 -20.47859 -19.80801 -19.62484 -17.79396 -17.35936 -16.99561 -16.50641 -15.98757 -15.76813 -15.54281 -15.00160 -14.80357 -14.53396 -14.33473 -14.14028 -13.76837 -13.75606 -13.28885 -13.17133 -13.02687 -12.83550 -12.78409 -12.42215 -12.26532 -11.96892 -11.90092 -11.68731 -11.51217 -11.22668 -11.19153 -11.03477 -10.82016 -10.76324 -10.25254 -10.15018 -10.01982 -9.82648 -9.76276 -9.15649 -9.02703 -8.79050 -8.58260 -6.89748 -5.75543 -3.09228 2.31928 2.49645 2.73737 3.21529 3.41115 3.46403 3.47932 3.97568 4.10617 4.17611 4.47904 4.49302 4.57458 4.79218 4.87635 4.89049 4.96832 5.00414 5.10806 5.17819 5.35043 5.40240 5.44134 5.46336 5.53036 5.55762 5.61987 5.63687 5.69643 5.78372 5.82592 5.89985 5.93177 6.02781 6.13853 6.48468 6.60455 6.81474 7.15050 7.22828 7.45961 7.59571 7.71146 7.83049 7.84433 8.18776 8.29695 9.16308 9.76672 10.39962 11.36369 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.002869 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.679766 B = 9755.633902 C =10496.641101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.005 4.005 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.106 0.894 18 N -0.713 5.713 19 C 0.525 3.475 20 O -0.531 6.531 21 C -0.125 4.125 22 H 0.110 0.890 23 C -0.112 4.112 24 C 0.100 3.900 25 N -0.621 5.621 26 C 0.525 3.475 27 C -0.169 4.169 28 O -0.544 6.544 29 C 0.116 3.884 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.253 0.747 36 H 0.023 0.977 37 H 0.051 0.949 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -3.148 23.833 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.124 0.876 18 N -0.363 5.363 19 C 0.309 3.691 20 O -0.407 6.407 21 C -0.147 4.147 22 H 0.128 0.872 23 C -0.150 4.150 24 C -0.023 4.023 25 N -0.356 5.356 26 C 0.315 3.685 27 C -0.228 4.228 28 O -0.421 6.421 29 C -0.007 4.007 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.220 -3.127 23.150 23.362 hybrid contribution -0.215 0.597 -0.674 0.926 sum -0.435 -2.530 22.476 22.622 Atomic orbital electron populations 1.22712 0.81720 1.02060 0.99772 1.87911 1.19091 1.27565 1.95044 1.23841 0.92908 0.84067 0.99515 0.91904 1.21565 0.88191 0.97299 0.89052 1.44261 1.21251 1.66449 1.00834 1.19072 1.05861 1.26818 0.84052 0.90117 1.24839 0.97300 1.00690 0.97359 1.69943 1.18436 1.48269 1.20072 0.86086 0.79298 0.78030 0.82298 1.21486 1.21756 1.20551 1.21835 0.97804 0.93756 0.86272 1.22431 0.96481 1.01081 0.77352 0.87584 1.45985 1.21893 1.61043 1.07369 1.20034 0.83245 0.78461 0.87315 1.90734 1.28753 1.42272 1.78919 1.22543 1.01578 0.97214 0.93406 0.87168 1.22551 0.98191 0.99888 0.94399 1.22149 0.95627 0.86055 0.98468 1.48557 1.52509 1.22086 1.12493 1.20526 0.80010 0.80624 0.87376 1.21897 1.03024 1.05143 0.92753 1.90753 1.39097 1.34045 1.78236 1.22137 1.01770 0.94123 0.82623 0.94832 0.93625 0.90233 0.91798 0.93525 0.93628 0.95957 0.93107 0.76951 0.89185 0.88732 0.90959 0.90787 0.89366 0.88904 0.89403 0.90473 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.82 10.44 -35.23 -0.37 -7.19 16 3 C 0.06 1.04 3.08 -24.90 -0.08 0.96 16 4 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 5 C 0.16 3.97 5.16 -3.07 -0.02 3.96 16 6 N -0.60 -15.42 3.40 -170.04 -0.58 -16.00 16 7 C -0.23 -6.46 10.26 -15.06 -0.15 -6.62 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 10 N -0.92 -26.96 10.36 55.49 0.57 -26.39 16 11 Si 0.91 22.25 29.56 -169.99 -5.02 17.22 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.13 2.77 6.93 -2.50 -0.02 2.75 16 16 C 0.13 2.41 3.09 -65.78 -0.20 2.21 16 17 H 0.11 2.22 7.63 -51.93 -0.40 1.83 16 18 N -0.71 -9.84 5.20 -51.73 -0.27 -10.11 16 19 C 0.52 7.12 7.15 -10.99 -0.08 7.04 16 20 O -0.53 -9.34 15.44 5.56 0.09 -9.26 16 21 C -0.13 -1.16 3.43 -89.62 -0.31 -1.46 16 22 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 23 C -0.11 -0.88 6.06 -24.89 -0.15 -1.03 16 24 C 0.10 0.61 6.49 -3.06 -0.02 0.59 16 25 N -0.62 -5.61 3.33 -170.48 -0.57 -6.17 16 26 C 0.52 5.40 7.96 -10.99 -0.09 5.31 16 27 C -0.17 -0.95 9.51 36.01 0.34 -0.61 16 28 O -0.54 -8.13 17.34 5.56 0.10 -8.03 16 29 C 0.12 1.16 6.36 -2.51 -0.02 1.14 16 30 H 0.03 0.39 8.11 -51.93 -0.42 -0.04 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.76 7.22 -51.93 -0.37 1.38 16 34 H 0.05 1.22 7.61 -51.93 -0.40 0.82 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 4.36 8.54 -40.82 -0.35 4.01 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.92 7.44 -51.93 -0.39 0.54 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 45 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 46 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 47 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -35.83 384.16 -7.80 -43.63 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.75 Total: 0.95 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 0.22 Total: 15.55 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.84 Total: -58.67 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.19 Total: -24.47 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.83 -7.80 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082347711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.282 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds