Wall clock time and date at job start Fri Apr 10 2020 18:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42910 * 113.99581 * 2 1 4 4 H 1.08994 * 110.64080 * 26.86102 * 3 2 1 5 5 C 1.54317 * 110.86979 * 263.60726 * 3 2 1 6 6 N 1.47020 * 107.27315 * 219.37416 * 5 3 2 7 7 C 1.36933 * 125.65411 * 179.00137 * 6 5 3 8 8 H 1.07998 * 120.00623 * 174.78761 * 7 6 5 9 9 C 1.38818 * 119.99669 * 354.78447 * 7 6 5 10 10 N 1.31612 * 120.00240 * 7.05045 * 9 7 6 11 11 Si 1.86803 * 119.99889 * 187.05505 * 9 7 6 12 12 H 1.48497 * 109.47062 * 94.98565 * 11 9 7 13 13 H 1.48495 * 109.47000 * 214.98350 * 11 9 7 14 14 H 1.48500 * 109.47204 * 334.98614 * 11 9 7 15 15 C 1.47474 * 108.71965 * 358.97936 * 6 5 3 16 16 C 1.54903 * 104.81230 * 24.07143 * 15 6 5 17 17 H 1.08993 * 111.00597 * 81.13150 * 16 15 6 18 18 N 1.46498 * 111.00391 * 204.95160 * 16 15 6 19 19 C 1.34779 * 119.99980 * 270.41494 * 18 16 15 20 20 O 1.21280 * 119.99670 * 359.97438 * 19 18 16 21 21 C 1.50692 * 120.00158 * 179.72562 * 19 18 16 22 22 H 1.09000 * 110.88676 * 59.57343 * 21 19 18 23 23 C 1.55164 * 111.00536 * 183.45358 * 21 19 18 24 24 C 1.54321 * 102.93971 * 153.57538 * 23 21 19 25 25 N 1.47026 * 107.27712 * 337.80855 * 24 23 21 26 26 C 1.34769 * 125.65283 * 178.99377 * 25 24 23 27 27 C 1.50701 * 120.00103 * 359.97438 * 26 25 24 28 28 O 1.21273 * 120.00267 * 179.97438 * 26 25 24 29 29 C 1.47468 * 108.71623 * 358.97640 * 25 24 23 30 30 H 1.08997 * 109.46784 * 299.99871 * 1 2 3 31 31 H 1.08993 * 109.46854 * 60.00155 * 1 2 3 32 32 H 1.09001 * 109.46793 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.89109 * 338.79272 * 5 3 2 34 34 H 1.09003 * 109.88169 * 99.96431 * 5 3 2 35 35 H 0.96995 * 120.00335 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.34672 * 265.25247 * 15 6 5 37 37 H 1.09000 * 110.40599 * 142.91765 * 15 6 5 38 38 H 0.97002 * 120.00341 * 90.42064 * 18 16 15 39 39 H 1.08996 * 110.71752 * 271.93751 * 23 21 19 40 40 H 1.08999 * 110.71375 * 35.21450 * 23 21 19 41 41 H 1.09005 * 109.88238 * 97.22648 * 24 23 21 42 42 H 1.09002 * 109.87862 * 218.39108 * 24 23 21 43 43 H 1.09003 * 109.47487 * 59.98888 * 27 26 25 44 44 H 1.08997 * 109.47800 * 179.97438 * 27 26 25 45 45 H 1.09007 * 109.46690 * 300.00131 * 27 26 25 46 46 H 1.09006 * 110.35007 * 265.25029 * 29 25 24 47 47 H 1.09003 * 110.40279 * 142.92056 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3805 1.7425 -1.4330 6 7 3.6668 2.4501 -1.3550 7 6 4.3514 2.9809 -2.4155 8 1 5.2492 3.5565 -2.2452 9 6 3.8915 2.7789 -3.7096 10 7 2.7275 2.1987 -3.9113 11 14 4.9247 3.3307 -5.1648 12 1 5.7390 2.1896 -5.6546 13 1 4.0330 3.8057 -6.2531 14 1 5.8233 4.4352 -4.7434 15 6 4.0980 2.4943 0.0547 16 6 3.3817 1.2959 0.7256 17 1 3.9169 0.3653 0.5369 18 7 3.2165 1.5211 2.1637 19 6 4.1771 1.1258 3.0225 20 8 5.1780 0.5832 2.6047 21 6 4.0099 1.3630 4.5012 22 1 3.1158 0.8648 4.8761 23 6 5.2699 0.9070 5.2836 24 6 5.2341 1.7959 6.5446 25 7 4.4227 2.9788 6.2221 26 6 4.1348 3.9881 7.0674 27 6 4.6598 3.9611 8.4798 28 8 3.4533 4.9182 6.6916 29 6 3.9762 2.8784 4.8202 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.4776 0.8666 -2.0743 34 1 1.6138 2.4098 -1.8268 35 1 2.4063 2.0573 -4.8155 36 1 3.7856 3.4305 0.5174 37 1 5.1794 2.3777 0.1251 38 1 2.4157 1.9546 2.4979 39 1 5.1965 -0.1468 5.5524 40 1 6.1732 1.0963 4.7037 41 1 4.7801 1.2490 7.3709 42 1 6.2458 2.1018 6.8112 43 1 5.7493 3.9350 8.4621 44 1 4.3266 4.8541 9.0085 45 1 4.2835 3.0745 8.9903 46 1 4.6593 3.4193 4.1651 47 1 2.9627 3.2657 4.7156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082347711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:03 Heat of formation + Delta-G solvation = -108.648764 kcal Electronic energy + Delta-G solvation = -28401.728121 eV Core-core repulsion = 24391.477685 eV Total energy + Delta-G solvation = -4010.250436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59625 -40.66393 -39.69917 -38.08387 -37.49589 -35.65178 -33.82487 -33.12379 -30.80469 -30.65327 -29.82552 -28.66757 -27.52818 -26.17167 -24.93784 -23.41419 -22.26787 -21.95840 -21.02673 -20.31875 -19.17774 -18.56321 -18.10245 -17.80794 -17.28289 -16.93941 -16.55225 -16.45508 -15.88417 -15.85284 -15.79397 -15.27654 -15.06573 -14.95946 -14.52136 -14.33372 -14.12923 -13.82881 -13.69546 -13.64275 -13.28840 -13.18443 -13.00613 -12.98128 -12.80640 -12.67596 -12.55493 -12.32678 -12.28886 -12.07718 -11.90244 -11.83203 -11.65485 -11.14546 -10.91351 -10.77989 -10.58772 -10.12799 -9.74039 -8.99129 -7.91300 -5.28044 1.43559 1.46685 1.48476 1.55199 1.60472 1.86950 2.14258 2.44642 2.75206 3.27283 3.28578 3.43942 3.50012 3.71423 3.87072 3.90039 3.90946 4.04474 4.19385 4.21448 4.29304 4.36885 4.44079 4.51084 4.57771 4.59005 4.64170 4.64790 4.77498 4.79836 4.84577 4.87096 4.97272 5.00105 5.11846 5.16052 5.27678 5.30062 5.35931 5.45147 5.63205 6.11167 6.29360 6.47549 6.49388 7.02124 7.10627 7.18969 7.67210 8.30039 9.18828 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.002869 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.679766 B = 9755.633902 C =10496.641101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.077 3.923 4 H 0.095 0.905 5 C 0.173 3.827 6 N -0.622 5.622 7 C -0.249 4.249 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.947 5.947 11 Si 0.979 3.021 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.267 1.267 15 C 0.131 3.869 16 C 0.151 3.849 17 H 0.078 0.922 18 N -0.702 5.702 19 C 0.524 3.476 20 O -0.573 6.573 21 C -0.109 4.109 22 H 0.141 0.859 23 C -0.112 4.112 24 C 0.102 3.898 25 N -0.620 5.620 26 C 0.516 3.484 27 C -0.160 4.160 28 O -0.603 6.603 29 C 0.115 3.885 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.102 0.898 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.249 0.751 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.415 0.585 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.055 0.945 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 -3.656 26.966 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.017 3.983 4 H 0.113 0.887 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.377 4.377 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.595 5.595 11 Si 0.807 3.193 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.192 1.192 15 C 0.004 3.996 16 C 0.045 3.955 17 H 0.096 0.904 18 N -0.353 5.353 19 C 0.311 3.689 20 O -0.451 6.451 21 C -0.131 4.131 22 H 0.159 0.841 23 C -0.150 4.150 24 C -0.019 4.019 25 N -0.354 5.354 26 C 0.308 3.692 27 C -0.219 4.219 28 O -0.484 6.484 29 C -0.009 4.009 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.252 0.748 39 H 0.127 0.873 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.134 0.866 46 H 0.074 0.926 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.318 -3.653 26.348 26.602 hybrid contribution -0.169 0.719 -1.642 1.801 sum -0.487 -2.933 24.706 24.884 Atomic orbital electron populations 1.22999 0.79302 1.03956 1.00744 1.87893 1.21760 1.26858 1.94917 1.23471 0.93681 0.85290 0.95809 0.88721 1.21298 0.87040 0.94761 0.92142 1.44529 1.21948 1.66308 1.02189 1.19436 1.06123 1.26929 0.85258 0.89968 1.25691 0.98459 1.01295 0.99952 1.70157 1.19787 1.49404 1.20149 0.85051 0.77742 0.77779 0.78714 1.21476 1.21691 1.19165 1.21932 0.97318 0.95688 0.84622 1.21816 0.95505 0.98303 0.79919 0.90413 1.45779 1.22994 1.61228 1.05296 1.20814 0.82060 0.76999 0.88987 1.90725 1.30389 1.44056 1.79973 1.22490 1.03780 0.97008 0.89836 0.84092 1.22585 0.96256 1.01477 0.94691 1.22347 0.96507 0.84743 0.98306 1.48671 1.52246 1.22738 1.11737 1.21413 0.79098 0.79729 0.88939 1.21923 1.04147 1.06332 0.89478 1.90725 1.41898 1.36269 1.79526 1.22031 1.01233 0.94255 0.83405 0.91661 0.94757 0.88011 0.96186 0.96284 0.94128 0.94404 0.94566 0.74826 0.87299 0.91106 0.87574 0.89148 0.87278 0.89297 0.86586 0.92619 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.03 10.44 -148.98 -1.56 -15.59 16 3 C 0.08 2.84 3.08 31.78 0.10 2.94 16 4 H 0.10 2.91 7.68 -2.39 -0.02 2.89 16 5 C 0.17 8.73 5.16 86.73 0.45 9.18 16 6 N -0.62 -33.14 3.40 -691.89 -2.35 -35.49 16 7 C -0.25 -14.42 10.26 84.04 0.86 -13.56 16 8 H 0.08 4.59 7.84 -2.91 -0.02 4.57 16 9 C -0.06 -3.52 5.48 84.86 0.46 -3.05 16 10 N -0.95 -57.66 10.36 21.65 0.22 -57.44 16 11 Si 0.98 46.73 29.56 68.60 2.03 48.76 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.13 5.68 6.93 86.84 0.60 6.28 16 16 C 0.15 5.57 3.09 46.38 0.14 5.72 16 17 H 0.08 3.36 7.63 -2.39 -0.02 3.34 16 18 N -0.70 -18.51 5.20 -435.98 -2.27 -20.77 16 19 C 0.52 13.68 7.15 87.65 0.63 14.31 16 20 O -0.57 -20.23 15.44 -3.03 -0.05 -20.28 16 21 C -0.11 -1.75 3.43 -10.15 -0.03 -1.79 16 22 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 23 C -0.11 -1.46 6.06 31.78 0.19 -1.27 16 24 C 0.10 0.85 6.49 86.73 0.56 1.41 16 25 N -0.62 -9.65 3.33 -811.68 -2.70 -12.35 16 26 C 0.52 9.63 7.96 87.66 0.70 10.32 16 27 C -0.16 -1.28 9.51 71.24 0.68 -0.60 16 28 O -0.60 -17.83 17.34 -3.01 -0.05 -17.88 16 29 C 0.11 2.11 6.36 86.85 0.55 2.66 16 30 H 0.06 1.28 8.11 -2.39 -0.02 1.27 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.02 1.16 7.22 -2.39 -0.02 1.15 16 34 H 0.02 1.04 7.61 -2.39 -0.02 1.02 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.41 8.11 8.54 -92.71 -0.79 7.32 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.30 7.44 -2.39 -0.02 1.28 16 41 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 45 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 46 H 0.06 1.26 8.03 -2.38 -0.02 1.24 16 47 H 0.08 1.59 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -83.89 384.16 0.58 -83.31 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.17 Total: 13.27 kcal Atomic # 6 Polarization: 27.34 SS G_CDS: 7.12 Total: 34.46 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -7.09 Total: -126.05 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -1.65 Total: -53.75 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -83.89 0.58 -83.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082347711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.336 kcal (2) G-P(sol) polarization free energy of solvation -83.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds