Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00152 * 2 1 4 4 H 1.09005 * 110.64146 * 26.84928 * 3 2 1 5 5 C 1.54336 * 110.84754 * 263.68803 * 3 2 1 6 6 N 1.47020 * 107.26729 * 219.67265 * 5 3 2 7 7 C 1.36929 * 125.65057 * 178.85003 * 6 5 3 8 8 H 1.08004 * 120.00341 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00031 * 359.68713 * 7 6 5 10 10 N 1.31617 * 119.99916 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99958 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47228 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46793 * 120.00365 * 11 9 7 14 14 H 1.48500 * 109.47000 * 240.00457 * 11 9 7 15 15 C 1.47424 * 108.70055 * 358.58390 * 6 5 3 16 16 C 1.54914 * 104.83297 * 24.35724 * 15 6 5 17 17 H 1.08997 * 111.00432 * 81.06410 * 16 15 6 18 18 N 1.46506 * 111.00108 * 204.91524 * 16 15 6 19 19 C 1.34770 * 119.99803 * 273.54334 * 18 16 15 20 20 O 1.21285 * 120.00321 * 0.02562 * 19 18 16 21 21 C 1.50702 * 119.99963 * 180.02562 * 19 18 16 22 22 H 1.09004 * 109.29532 * 40.41347 * 21 19 18 23 23 C 1.52920 * 109.29937 * 281.03804 * 21 19 18 24 24 C 1.53348 * 108.67513 * 188.93014 * 23 21 19 25 25 C 1.53074 * 108.42095 * 67.53252 * 24 23 21 26 26 C 1.50175 * 109.89096 * 311.09613 * 25 24 23 27 27 O 1.21279 * 118.24615 * 197.56438 * 26 25 24 28 28 N 1.33353 * 123.50705 * 17.58524 * 26 25 24 29 29 C 1.46502 * 117.94538 * 177.75395 * 28 26 25 30 30 H 1.09006 * 109.46723 * 60.00563 * 1 2 3 31 31 H 1.08998 * 109.47486 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47201 * 300.00917 * 1 2 3 33 33 H 1.08996 * 109.99181 * 100.19348 * 5 3 2 34 34 H 1.09004 * 109.77801 * 339.02970 * 5 3 2 35 35 H 0.97000 * 120.00284 * 179.97438 * 10 9 7 36 36 H 1.09000 * 110.36737 * 143.19262 * 15 6 5 37 37 H 1.09001 * 110.36940 * 265.40516 * 15 6 5 38 38 H 0.96999 * 119.99748 * 93.54824 * 18 16 15 39 39 H 1.08997 * 109.60438 * 308.68798 * 23 21 19 40 40 H 1.09006 * 109.60585 * 69.17563 * 23 21 19 41 41 H 1.08993 * 109.67508 * 307.79942 * 24 23 21 42 42 H 1.09002 * 109.70429 * 187.27691 * 24 23 21 43 43 H 1.09002 * 109.39921 * 190.97518 * 25 24 23 44 44 H 1.09000 * 109.40419 * 71.22661 * 25 24 23 45 45 H 1.09004 * 109.47131 * 270.02023 * 29 28 26 46 46 H 1.08999 * 109.47314 * 30.02173 * 29 28 26 47 47 H 1.09001 * 109.47501 * 150.02754 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3352 2.0267 0.4607 5 6 2.3786 1.7427 -1.4336 6 7 3.6686 2.4437 -1.3582 7 6 4.3542 2.9701 -2.4202 8 1 5.2985 3.4690 -2.2596 9 6 3.8384 2.8572 -3.7040 10 7 2.6901 2.2447 -3.9003 11 14 4.7740 3.5747 -5.1529 12 1 6.0278 4.2061 -4.6688 13 1 5.1046 2.4918 -6.1137 14 1 3.9336 4.5960 -5.8280 15 6 4.0988 2.4917 0.0511 16 6 3.3816 1.2958 0.7257 17 1 3.9158 0.3641 0.5391 18 7 3.2167 1.5253 2.1632 19 6 4.2039 1.1892 3.0168 20 8 5.2290 0.6971 2.5950 21 6 4.0341 1.4248 4.4956 22 1 3.0152 1.1689 4.7865 23 6 4.2877 2.9009 4.8046 24 6 4.3332 3.0831 6.3266 25 6 5.5790 2.3727 6.8618 26 6 5.6541 0.9814 6.3015 27 8 6.3756 0.1783 6.8541 28 7 4.9704 0.5820 5.2285 29 6 5.1735 -0.7900 4.7566 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.6145 2.4135 -1.8264 34 1 2.4700 0.8658 -2.0746 35 1 2.3294 2.1661 -4.7973 36 1 5.1802 2.3744 0.1219 37 1 3.7889 3.4303 0.5106 38 1 2.3969 1.9192 2.5005 39 1 5.2397 3.2069 4.3710 40 1 3.4821 3.5055 4.3878 41 1 3.4408 2.6469 6.7752 42 1 4.3840 4.1448 6.5682 43 1 5.5280 2.3227 7.9495 44 1 6.4682 2.9301 6.5675 45 1 5.9885 -0.8083 4.0328 46 1 5.4234 -1.4316 5.6015 47 1 4.2599 -1.1507 4.2840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082350297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -77.180387 kcal Electronic energy + Delta-G solvation = -29020.774808 eV Core-core repulsion = 25011.888944 eV Total energy + Delta-G solvation = -4008.885865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12307 -39.52712 -38.25430 -36.45314 -35.94312 -34.49348 -33.95760 -31.93251 -30.37674 -28.78949 -27.41152 -27.09761 -26.18925 -25.30886 -24.10647 -22.56971 -21.18531 -20.63113 -20.04235 -18.92164 -17.85140 -17.02836 -16.80444 -16.66073 -16.37754 -15.59567 -15.49947 -14.97503 -14.77223 -14.52053 -14.47593 -14.31507 -14.00467 -13.81308 -13.69990 -13.30487 -12.82917 -12.64806 -12.43335 -12.28602 -12.14819 -11.95178 -11.86342 -11.59220 -11.40189 -11.30430 -11.28117 -11.06751 -10.85900 -10.81388 -10.25892 -10.13265 -10.06266 -9.84576 -9.75942 -9.20095 -8.96206 -8.73866 -8.62926 -6.94352 -5.78123 -3.13314 2.40945 2.46310 2.76542 3.16817 3.37406 3.43498 3.45722 4.04950 4.21129 4.27179 4.31642 4.40893 4.47731 4.70177 4.81958 5.02866 5.04272 5.26666 5.29021 5.33299 5.37184 5.43218 5.46761 5.49587 5.51873 5.56866 5.63441 5.64152 5.76728 5.77038 5.85207 5.96086 5.98996 6.08329 6.13365 6.41469 6.55708 6.74180 7.17297 7.22359 7.41598 7.50562 7.65738 7.79982 7.97102 8.14373 8.21328 9.12739 9.72798 10.35161 11.33318 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003127 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.812463 B = 8953.462595 C = 9763.737839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.132 3.868 16 C 0.134 3.866 17 H 0.104 0.896 18 N -0.711 5.711 19 C 0.502 3.498 20 O -0.520 6.520 21 C 0.128 3.872 22 H 0.096 0.904 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.136 4.136 26 C 0.518 3.482 27 O -0.554 6.554 28 N -0.586 5.586 29 C 0.080 3.920 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.253 0.747 36 H 0.050 0.950 37 H 0.023 0.977 38 H 0.397 0.603 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 1.116 19.727 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.029 3.971 17 H 0.122 0.878 18 N -0.362 5.362 19 C 0.286 3.714 20 O -0.394 6.394 21 C 0.020 3.980 22 H 0.114 0.886 23 C -0.167 4.167 24 C -0.158 4.158 25 C -0.175 4.175 26 C 0.307 3.693 27 O -0.433 6.433 28 N -0.319 5.319 29 C -0.062 4.062 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.230 0.770 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.944 0.179 19.468 19.864 hybrid contribution -0.378 0.800 -0.869 1.240 sum -4.321 0.979 18.599 19.119 Atomic orbital electron populations 1.22716 0.81656 1.02121 0.99766 1.87914 1.19137 1.27537 1.95040 1.23838 0.92786 0.84091 0.99553 0.91880 1.21565 0.88208 0.97341 0.88951 1.44259 1.21195 1.66658 1.00676 1.19120 1.02276 1.29651 0.84676 0.90084 1.24820 0.97431 1.00619 0.97411 1.69940 1.19222 1.47171 1.20582 0.86006 0.78822 0.78220 0.82486 1.20414 1.21639 1.21715 1.21808 0.97840 0.93670 0.86257 1.22423 0.96561 1.01031 0.77131 0.87766 1.45933 1.18943 1.63781 1.07517 1.20617 0.84045 0.78785 0.87942 1.90757 1.27578 1.42546 1.78552 1.20954 0.94471 0.92795 0.89752 0.88588 1.21896 1.04824 0.92601 0.97406 1.21659 0.97880 1.01804 0.94478 1.21689 1.00650 0.92695 1.02513 1.20120 0.79114 0.90430 0.79630 1.90715 1.39368 1.53904 1.59276 1.46904 1.42956 1.13819 1.28181 1.21789 1.02494 0.81546 1.00410 0.93592 0.90200 0.94834 0.93325 0.91880 0.93676 0.93149 0.95974 0.76956 0.89859 0.88764 0.90764 0.89787 0.88029 0.88038 0.90756 0.90612 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.85 101.05 1.10 1.54 16 2 O -0.38 -6.51 10.44 -35.23 -0.37 -6.88 16 3 C 0.06 0.99 3.06 -24.89 -0.08 0.91 16 4 H 0.06 0.95 7.67 -51.93 -0.40 0.55 16 5 C 0.16 3.85 5.16 -3.06 -0.02 3.83 16 6 N -0.60 -14.97 3.39 -170.06 -0.58 -15.55 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 10 N -0.92 -26.47 10.31 55.49 0.57 -25.90 16 11 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.13 2.68 6.93 -2.53 -0.02 2.66 16 16 C 0.13 2.32 3.04 -65.78 -0.20 2.12 16 17 H 0.10 2.11 7.73 -51.93 -0.40 1.71 16 18 N -0.71 -8.95 5.23 -51.73 -0.27 -9.22 16 19 C 0.50 6.62 6.31 -10.99 -0.07 6.55 16 20 O -0.52 -9.16 14.08 5.55 0.08 -9.08 16 21 C 0.13 1.22 3.08 -69.53 -0.21 1.00 16 22 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 23 C -0.13 -0.93 5.29 -26.59 -0.14 -1.07 16 24 C -0.12 -0.67 6.03 -26.51 -0.16 -0.83 16 25 C -0.14 -1.07 6.03 -28.10 -0.17 -1.24 16 26 C 0.52 6.41 7.47 -11.87 -0.09 6.32 16 27 O -0.55 -8.98 16.18 5.56 0.09 -8.89 16 28 N -0.59 -6.98 2.96 -176.50 -0.52 -7.50 16 29 C 0.08 1.03 8.69 59.85 0.52 1.55 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.05 1.23 7.52 -51.93 -0.39 0.84 16 34 H 0.06 1.70 7.28 -51.93 -0.38 1.32 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.40 3.62 8.51 -40.82 -0.35 3.27 16 39 H 0.08 0.74 8.10 -51.93 -0.42 0.31 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.12 6.95 -51.93 -0.36 0.76 16 46 H 0.08 0.97 7.13 -51.93 -0.37 0.60 16 47 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -35.15 375.47 -7.81 -42.96 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.66 Total: 0.95 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 0.21 Total: 16.61 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.80 Total: -58.17 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.20 Total: -24.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.15 -7.81 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082350297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.217 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds