Wall clock time and date at job start Fri Apr 10 2020 18:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21273 * 120.00226 * 2 1 4 4 N 1.34781 * 119.99579 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.63326 * 355.06912 * 4 2 1 6 6 C 1.53188 * 108.77350 * 126.36736 * 5 4 2 7 7 C 1.53043 * 109.31071 * 54.64166 * 6 5 4 8 8 C 1.53037 * 109.53447 * 298.62956 * 7 6 5 9 9 H 1.09004 * 109.52570 * 301.40063 * 8 7 6 10 10 C 1.50700 * 109.49904 * 181.32010 * 8 7 6 11 11 O 1.21285 * 119.99955 * 0.16094 * 10 8 7 12 12 N 1.34778 * 120.00432 * 180.16271 * 10 8 7 13 13 C 1.46496 * 120.00448 * 179.97438 * 12 10 8 14 14 H 1.09004 * 110.88372 * 37.42569 * 13 12 10 15 15 C 1.54911 * 111.00611 * 273.55013 * 13 12 10 16 16 N 1.47420 * 104.92667 * 204.82033 * 15 13 12 17 17 C 1.36934 * 125.64742 * 204.15310 * 16 15 13 18 18 H 1.08004 * 120.00379 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99890 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00395 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47527 * 89.99530 * 21 19 17 23 23 H 1.48500 * 109.47701 * 210.00213 * 21 19 17 24 24 H 1.48502 * 109.46907 * 329.99985 * 21 19 17 25 25 C 1.47291 * 108.56261 * 24.15288 * 16 15 13 26 26 C 1.54328 * 107.30293 * 358.92480 * 25 16 15 27 27 H 1.08997 * 110.72330 * 219.45186 * 26 25 16 28 28 O 1.42900 * 110.87002 * 96.25040 * 26 25 16 29 29 C 1.46922 * 120.62722 * 175.04760 * 4 2 1 30 30 H 1.09006 * 109.47358 * 185.39180 * 1 2 3 31 31 H 1.09003 * 109.46950 * 305.38867 * 1 2 3 32 32 H 1.09000 * 109.47441 * 65.38661 * 1 2 3 33 33 H 1.09002 * 109.59025 * 246.16065 * 5 4 2 34 34 H 1.09001 * 109.58720 * 6.58623 * 5 4 2 35 35 H 1.09009 * 109.49652 * 174.58694 * 6 5 4 36 36 H 1.08995 * 109.50502 * 294.68273 * 6 5 4 37 37 H 1.09004 * 109.45796 * 178.61252 * 7 6 5 38 38 H 1.08999 * 109.46464 * 58.65380 * 7 6 5 39 39 H 0.96996 * 119.99510 * 0.02562 * 12 10 8 40 40 H 1.09002 * 110.36548 * 323.71103 * 15 13 12 41 41 H 1.09007 * 110.36420 * 85.92626 * 15 13 12 42 42 H 0.97002 * 119.99902 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.85950 * 239.50057 * 25 16 15 44 44 H 1.08996 * 110.00165 * 118.42607 * 25 16 15 45 45 H 0.96692 * 114.00584 * 66.39327 * 28 26 25 46 46 H 1.09005 * 109.58792 * 113.84105 * 29 4 2 47 47 H 1.09006 * 109.70677 * 353.49238 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4643 -2.4454 0.1076 6 6 1.8850 -3.3465 -1.0576 7 6 3.4096 -3.4798 -1.0695 8 6 4.0422 -2.1011 -1.2723 9 1 3.6883 -1.6723 -2.2099 10 6 5.5424 -2.2376 -1.3163 11 8 6.0555 -3.3304 -1.2001 12 7 6.3138 -1.1454 -1.4847 13 6 7.7722 -1.2780 -1.5269 14 1 8.0646 -2.1894 -2.0484 15 6 8.3750 -1.2368 -0.1005 16 7 9.7611 -0.7710 -0.2873 17 6 10.8046 -1.0076 0.5672 18 1 10.6452 -1.5809 1.4685 19 6 12.0674 -0.5107 0.2751 20 7 12.2618 0.1876 -0.8236 21 14 13.4910 -0.8341 1.4404 22 1 14.1704 -2.0966 1.0536 23 1 14.4573 0.2910 1.3658 24 1 12.9770 -0.9538 2.8285 25 6 9.8342 -0.0094 -1.5460 26 6 8.4263 -0.0307 -2.1777 27 1 8.4906 -0.1490 -3.2593 28 8 7.7002 1.1537 -1.8429 29 6 3.6459 -1.1858 -0.1097 30 1 -0.3634 -1.0232 0.0966 31 1 -0.3633 0.5952 0.8378 32 1 -0.3634 0.4280 -0.9343 33 1 1.7170 -2.9273 1.0520 34 1 0.3900 -2.2670 0.0620 35 1 1.4346 -4.3318 -0.9365 36 1 1.5509 -2.9063 -1.9971 37 1 3.7100 -4.1404 -1.8828 38 1 3.7451 -3.8972 -0.1201 39 1 5.9034 -0.2714 -1.5773 40 1 7.8209 -0.5374 0.5255 41 1 8.3659 -2.2321 0.3440 42 1 13.1442 0.5352 -1.0275 43 1 10.5505 -0.4777 -2.2210 44 1 10.1339 1.0186 -1.3428 45 1 8.0682 1.9620 -2.2252 46 1 4.0766 -1.5650 0.8171 47 1 4.0133 -0.1768 -0.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083618336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:40 Heat of formation + Delta-G solvation = -88.072754 kcal Electronic energy + Delta-G solvation = -28761.956658 eV Core-core repulsion = 24752.598465 eV Total energy + Delta-G solvation = -4009.358193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72206 -39.56800 -38.09465 -37.10806 -34.81512 -33.99318 -33.35015 -32.08668 -31.41203 -29.84911 -28.42996 -27.04858 -25.51638 -24.66931 -23.92940 -21.87006 -20.58509 -20.16440 -19.74300 -19.27800 -17.69786 -17.34392 -16.77522 -16.61082 -16.32201 -15.71630 -15.36549 -15.05779 -14.78736 -14.47308 -14.11935 -14.05335 -13.76776 -13.66898 -13.53256 -13.16953 -13.02202 -12.84315 -12.62557 -12.36065 -12.33361 -12.21966 -11.74858 -11.28226 -11.24054 -11.17785 -10.94267 -10.91971 -10.81829 -10.50193 -10.41472 -10.13800 -10.07403 -9.79330 -9.61967 -9.29383 -8.96213 -8.70236 -8.62389 -6.85672 -5.73453 -3.06112 2.33922 2.57068 2.86771 3.34043 3.41450 3.46405 3.48532 4.20190 4.30869 4.48514 4.53406 4.55660 4.57725 4.69768 4.75558 4.91629 5.03640 5.06100 5.15365 5.25111 5.30076 5.37408 5.40373 5.51062 5.52839 5.56288 5.57858 5.68685 5.73260 5.88776 5.89682 6.06616 6.08623 6.14557 6.23934 6.62478 6.68418 6.95685 7.09068 7.34192 7.45786 7.73126 7.81161 7.89309 8.09727 8.20934 8.44636 9.19062 9.79486 10.44449 11.39111 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.002809 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.095879 B = 9966.550192 C =10312.423670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.511 3.489 3 O -0.542 6.542 4 N -0.612 5.612 5 C 0.098 3.902 6 C -0.135 4.135 7 C -0.101 4.101 8 C -0.120 4.120 9 H 0.098 0.902 10 C 0.515 3.485 11 O -0.539 6.539 12 N -0.706 5.706 13 C 0.139 3.861 14 H 0.102 0.898 15 C 0.132 3.868 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.927 5.927 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.060 0.940 28 O -0.566 6.566 29 C 0.120 3.880 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.407 0.593 40 H 0.025 0.975 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.380 0.620 46 H 0.075 0.925 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.492 -3.673 -3.381 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.300 3.700 3 O -0.419 6.419 4 N -0.346 5.346 5 C -0.024 4.024 6 C -0.173 4.173 7 C -0.139 4.139 8 C -0.142 4.142 9 H 0.116 0.884 10 C 0.300 3.700 11 O -0.416 6.416 12 N -0.357 5.357 13 C 0.033 3.967 14 H 0.119 0.881 15 C 0.005 3.995 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.029 3.971 26 C 0.008 3.992 27 H 0.078 0.922 28 O -0.373 6.373 29 C -0.003 4.003 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.243 0.757 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.228 0.772 46 H 0.093 0.907 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.925 -4.252 -2.946 25.456 hybrid contribution 1.073 0.629 0.153 1.254 sum -23.851 -3.623 -2.793 24.286 Atomic orbital electron populations 1.22045 0.91852 1.04547 1.05393 1.20833 0.90639 0.83031 0.75492 1.90754 1.70546 1.30974 1.49635 1.48157 1.07028 1.06340 1.73122 1.21988 0.97321 0.83819 0.99298 1.21962 0.96596 1.00083 0.98704 1.21342 0.93595 0.94895 1.04031 1.21692 0.92801 0.98754 1.00943 0.88364 1.20344 0.88522 0.84576 0.76554 1.90714 1.75053 1.26310 1.49509 1.45854 1.07007 1.10104 1.72760 1.22341 0.78153 0.97288 0.98929 0.88057 1.21819 0.86837 0.97606 0.93251 1.44333 1.03537 1.61712 1.23169 1.19090 0.86670 1.28329 1.01024 0.90276 1.24792 0.97533 1.00264 0.97998 1.69913 1.21728 1.40598 1.25261 0.86066 0.82115 0.77262 0.80031 1.21565 1.21680 1.20666 1.21893 0.89546 0.97778 0.87907 1.23487 0.94188 0.84476 0.97049 0.92184 1.86264 1.56108 1.17010 1.77879 1.21517 0.79838 1.01287 0.97648 0.89840 0.88758 0.88658 0.90862 0.88842 0.90090 0.91309 0.90550 0.90714 0.75691 0.95678 0.93785 0.93742 0.92659 0.92881 0.77244 0.90662 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 10.12 36.01 0.36 -0.64 16 2 C 0.51 5.29 7.80 -10.98 -0.09 5.20 16 3 O -0.54 -8.21 16.54 5.56 0.09 -8.12 16 4 N -0.61 -5.59 2.97 -172.77 -0.51 -6.10 16 5 C 0.10 0.57 6.36 -3.71 -0.02 0.54 16 6 C -0.14 -0.80 6.08 -26.61 -0.16 -0.97 16 7 C -0.10 -0.94 4.46 -26.69 -0.12 -1.06 16 8 C -0.12 -1.30 2.68 -91.66 -0.25 -1.54 16 9 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 10 C 0.52 7.71 7.16 -10.98 -0.08 7.63 16 11 O -0.54 -9.99 15.73 5.55 0.09 -9.90 16 12 N -0.71 -10.96 5.09 -51.73 -0.26 -11.22 16 13 C 0.14 2.61 3.20 -65.78 -0.21 2.40 16 14 H 0.10 2.01 7.73 -51.93 -0.40 1.61 16 15 C 0.13 2.97 6.91 -2.53 -0.02 2.95 16 16 N -0.60 -15.75 3.40 -169.86 -0.58 -16.32 16 17 C -0.22 -6.37 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.93 -27.14 10.33 55.49 0.57 -26.56 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.15 3.67 5.15 -2.91 -0.02 3.65 16 26 C 0.07 1.24 4.19 -24.90 -0.10 1.14 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 O -0.57 -9.37 12.14 -35.23 -0.43 -9.80 16 29 C 0.12 1.33 5.55 -3.71 -0.02 1.31 16 30 H 0.08 0.25 5.10 -51.93 -0.27 -0.01 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.30 5.04 -51.93 -0.26 0.04 16 35 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.41 5.84 7.09 -40.82 -0.29 5.55 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.06 1.44 7.39 -51.93 -0.38 1.06 16 44 H 0.05 1.38 7.45 -51.93 -0.39 0.99 16 45 H 0.38 4.93 9.12 45.56 0.42 5.34 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.10 1.28 6.64 -51.93 -0.34 0.94 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -35.92 371.81 -7.95 -43.87 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.53 Total: 7.40 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -0.97 Total: 13.71 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.78 Total: -60.21 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.25 Total: -27.82 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.92 -7.95 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083618336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.203 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds