Wall clock time and date at job start Fri Apr 10 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47307 * 2 1 4 4 C 1.50695 * 109.47156 * 120.00452 * 2 1 3 5 5 O 1.21289 * 119.99956 * 119.99768 * 4 2 1 6 6 N 1.34774 * 120.00041 * 299.99829 * 4 2 1 7 7 C 1.46504 * 120.00171 * 180.02562 * 6 4 2 8 8 H 1.09004 * 110.77513 * 31.75742 * 7 6 4 9 9 C 1.54322 * 110.71963 * 268.52516 * 7 6 4 10 10 N 1.47019 * 107.27000 * 219.44383 * 9 7 6 11 11 C 1.36941 * 125.64983 * 178.98681 * 10 9 7 12 12 H 1.08007 * 119.99895 * 349.93777 * 11 10 9 13 13 C 1.38803 * 120.00097 * 169.94226 * 11 10 9 14 14 N 1.31626 * 120.00222 * 350.41471 * 13 11 10 15 15 Si 1.86804 * 120.00248 * 170.41635 * 13 11 10 16 16 H 1.48501 * 109.46952 * 94.13640 * 15 13 11 17 17 H 1.48489 * 109.47405 * 214.13908 * 15 13 11 18 18 H 1.48501 * 109.46750 * 334.14201 * 15 13 11 19 19 C 1.47425 * 108.70572 * 358.93568 * 10 9 7 20 20 C 1.54912 * 104.82655 * 24.13248 * 19 10 9 21 21 H 1.09008 * 111.03408 * 204.90198 * 20 19 10 22 22 O 1.42894 * 111.00705 * 81.06562 * 20 19 10 23 23 N 1.46506 * 109.47167 * 240.00411 * 2 1 3 24 24 C 1.45756 * 117.94803 * 119.99570 * 23 2 1 25 25 C 1.52921 * 110.48507 * 160.92737 * 24 23 2 26 26 C 1.53341 * 108.67386 * 50.75382 * 25 24 23 27 27 C 1.53067 * 108.42997 * 292.47033 * 26 25 24 28 28 C 1.33354 * 117.94346 * 299.73907 * 23 2 1 29 29 O 1.21286 * 118.24838 * 2.22299 * 28 23 2 30 30 H 1.08994 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46853 * 299.99582 * 1 2 3 32 32 H 1.09000 * 109.47081 * 59.99434 * 1 2 3 33 33 H 0.96998 * 120.00395 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.88100 * 338.85822 * 9 7 6 35 35 H 1.08998 * 109.88936 * 99.86531 * 9 7 6 36 36 H 0.96997 * 119.99587 * 179.97438 * 14 13 11 37 37 H 1.09001 * 110.36666 * 265.29433 * 19 10 9 38 38 H 1.08997 * 110.36623 * 142.96984 * 19 10 9 39 39 H 0.96704 * 113.99756 * 67.80213 * 22 20 19 40 40 H 1.08993 * 109.30016 * 281.24005 * 24 23 2 41 41 H 1.09003 * 109.29442 * 40.82580 * 24 23 2 42 42 H 1.09003 * 109.60042 * 170.51287 * 25 24 23 43 43 H 1.08998 * 109.60150 * 290.83679 * 25 24 23 44 44 H 1.09002 * 109.67188 * 52.20807 * 26 25 24 45 45 H 1.09005 * 109.67348 * 172.73369 * 26 25 24 46 46 H 1.09001 * 109.40339 * 169.03117 * 27 26 25 47 47 H 1.08999 * 109.39747 * 288.85739 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 1 3.1711 -1.3904 3.4659 9 6 1.1824 -2.0065 4.1181 10 7 1.1501 -1.9634 5.5873 11 6 0.3608 -2.7416 6.3915 12 1 -0.4239 -3.3439 5.9579 13 6 0.5693 -2.7564 7.7637 14 7 1.6354 -2.1769 8.2737 15 14 -0.6632 -3.5986 8.8867 16 1 -0.2253 -4.9941 9.1440 17 1 -0.7461 -2.8607 10.1726 18 1 -1.9980 -3.6108 8.2360 19 6 2.1091 -0.9445 6.0516 20 6 2.2591 0.0317 4.8581 21 1 3.2183 0.5485 4.8936 22 8 1.1783 0.9656 4.8212 23 7 2.0184 -0.6905 -1.1963 24 6 2.8530 0.0605 -2.1257 25 6 3.6412 -0.8914 -3.0263 26 6 2.6684 -1.9060 -3.6391 27 6 2.1400 -2.8066 -2.5199 28 6 1.6757 -1.9684 -1.3638 29 8 0.9460 -2.4796 -0.5410 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1489 0.5383 2.5436 34 1 0.1941 -1.7789 3.7188 35 1 1.5000 -2.9931 3.7808 36 1 1.7807 -2.1869 9.2327 37 1 3.0681 -1.4057 6.2874 38 1 1.7145 -0.4211 6.9225 39 1 1.1761 1.5940 5.5563 40 1 2.2207 0.6992 -2.7423 41 1 3.5511 0.6802 -1.5629 42 1 4.1272 -0.3248 -3.8207 43 1 4.3943 -1.4136 -2.4362 44 1 1.8378 -1.3799 -4.1098 45 1 3.1885 -2.5106 -4.3821 46 1 1.3079 -3.4016 -2.8963 47 1 2.9363 -3.4702 -2.1829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084085528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:59 Heat of formation + Delta-G solvation = -83.341847 kcal Electronic energy + Delta-G solvation = -29293.309866 eV Core-core repulsion = 25284.156821 eV Total energy + Delta-G solvation = -4009.153046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01380 -39.18706 -37.68650 -36.50758 -34.78201 -34.65328 -33.87359 -31.74663 -30.65727 -29.62835 -28.38608 -26.98083 -24.96450 -24.60015 -24.03282 -22.59111 -20.69929 -20.38760 -19.66660 -18.54950 -17.54393 -17.13755 -16.95677 -16.47569 -15.93750 -15.54467 -15.11167 -14.74620 -14.65712 -14.40508 -14.16390 -14.06928 -13.86276 -13.66558 -13.40853 -13.03511 -12.83661 -12.58242 -12.40359 -12.24018 -12.06164 -11.75932 -11.70834 -11.29836 -11.28543 -11.26425 -11.19620 -10.93265 -10.78125 -10.57059 -10.37490 -10.06826 -9.78238 -9.65899 -9.43637 -9.24407 -8.70683 -8.61657 -8.52978 -6.75182 -5.72475 -3.03292 2.63688 2.87168 2.94980 3.42806 3.48289 3.50636 3.56426 4.37767 4.41807 4.44013 4.53407 4.56542 4.62528 4.88010 4.96465 4.97850 5.10529 5.19282 5.20538 5.37578 5.41101 5.42106 5.51084 5.52181 5.57249 5.60381 5.63891 5.70993 5.78795 5.89057 5.97234 6.09047 6.18090 6.31695 6.38455 6.65849 6.84540 7.05823 7.32924 7.43614 7.45502 7.76712 7.91055 8.11600 8.28424 8.28921 8.60434 9.21899 9.83650 10.50226 11.41229 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.023286 B = 0.002971 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.141123 B = 9420.878720 C = 9922.748881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 H 0.107 0.893 4 C 0.507 3.493 5 O -0.528 6.528 6 N -0.707 5.707 7 C 0.146 3.854 8 H 0.100 0.900 9 C 0.133 3.867 10 N -0.596 5.596 11 C -0.220 4.220 12 H 0.076 0.924 13 C -0.010 4.010 14 N -0.924 5.924 15 Si 0.912 3.088 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.150 3.850 20 C 0.066 3.934 21 H 0.059 0.941 22 O -0.561 6.561 23 N -0.593 5.593 24 C 0.116 3.884 25 C -0.136 4.136 26 C -0.122 4.122 27 C -0.132 4.132 28 C 0.524 3.476 29 O -0.529 6.529 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.030 0.970 35 H 0.027 0.973 36 H 0.252 0.748 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.377 0.623 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 10.634 -23.410 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 H 0.125 0.875 4 C 0.291 3.709 5 O -0.404 6.404 6 N -0.359 5.359 7 C 0.041 3.959 8 H 0.118 0.882 9 C 0.006 3.994 10 N -0.322 5.322 11 C -0.348 4.348 12 H 0.094 0.906 13 C -0.206 4.206 14 N -0.572 5.572 15 Si 0.742 3.258 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.206 1.206 19 C 0.024 3.976 20 C 0.006 3.994 21 H 0.077 0.923 22 O -0.367 6.367 23 N -0.327 5.327 24 C -0.007 4.007 25 C -0.174 4.174 26 C -0.160 4.160 27 C -0.172 4.172 28 C 0.313 3.687 29 O -0.405 6.405 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.241 0.759 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.225 0.775 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.941 9.224 -23.416 25.474 hybrid contribution -0.518 0.245 1.274 1.397 sum 3.423 9.469 -22.142 24.324 Atomic orbital electron populations 1.22195 0.92361 1.05538 1.02369 1.20935 0.96532 0.96120 0.84460 0.87496 1.20657 0.80571 0.84927 0.84748 1.90677 1.38014 1.25346 1.86338 1.45725 1.53499 1.32035 1.04683 1.22058 0.98725 0.92866 0.82243 0.88250 1.21579 0.96098 0.95575 0.86169 1.44274 1.46780 1.42070 0.99079 1.19057 1.08387 1.19351 0.88049 0.90594 1.24788 0.97817 1.01073 0.96911 1.69925 1.26561 1.49457 1.11268 0.86094 0.80704 0.78746 0.80209 1.21637 1.21665 1.20601 1.22051 0.93820 0.88719 0.93047 1.23615 0.88356 0.90127 0.97344 0.92331 1.86254 1.51015 1.47737 1.51661 1.47070 1.51777 1.11589 1.22309 1.21410 0.93386 0.94286 0.91589 1.21878 0.98376 0.97907 0.99251 1.21647 0.99290 0.97551 0.97484 1.21639 1.03350 0.98385 0.93845 1.19956 0.80371 0.81222 0.87162 1.90716 1.36364 1.69654 1.43722 0.89144 0.91083 0.91916 0.75911 0.95210 0.95490 0.93787 0.94658 0.90500 0.77518 0.91653 0.90870 0.89855 0.90658 0.91203 0.90659 0.88433 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 8.98 37.16 0.33 -1.63 16 2 C 0.13 1.55 3.02 -69.08 -0.21 1.34 16 3 H 0.11 0.93 7.79 -51.93 -0.40 0.53 16 4 C 0.51 8.47 6.41 -10.99 -0.07 8.40 16 5 O -0.53 -10.96 14.18 -15.38 -0.22 -11.18 16 6 N -0.71 -11.64 4.97 -52.03 -0.26 -11.90 16 7 C 0.15 2.88 3.20 -66.10 -0.21 2.67 16 8 H 0.10 2.04 7.55 -51.93 -0.39 1.65 16 9 C 0.13 3.17 6.99 -3.07 -0.02 3.15 16 10 N -0.60 -15.99 3.39 -170.08 -0.58 -16.57 16 11 C -0.22 -6.43 10.24 -15.06 -0.15 -6.59 16 12 H 0.08 2.20 7.85 -52.48 -0.41 1.78 16 13 C -0.01 -0.29 5.40 -17.43 -0.09 -0.39 16 14 N -0.92 -27.32 10.68 55.49 0.59 -26.73 16 15 Si 0.91 22.71 29.56 -169.99 -5.03 17.68 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.15 3.59 5.16 -2.53 -0.01 3.57 16 20 C 0.07 1.22 4.28 -24.58 -0.11 1.11 16 21 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 22 O -0.56 -9.40 12.24 -35.23 -0.43 -9.83 16 23 N -0.59 -6.86 2.61 -168.70 -0.44 -7.30 16 24 C 0.12 0.85 6.25 -4.48 -0.03 0.82 16 25 C -0.14 -0.84 6.02 -26.60 -0.16 -1.00 16 26 C -0.12 -0.78 6.03 -26.52 -0.16 -0.94 16 27 C -0.13 -1.31 6.03 -28.11 -0.17 -1.48 16 28 C 0.52 7.37 6.12 -11.88 -0.07 7.29 16 29 O -0.53 -9.94 12.86 -15.37 -0.20 -10.13 16 30 H 0.09 1.40 5.86 -51.93 -0.30 1.09 16 31 H 0.07 0.78 7.56 -51.93 -0.39 0.38 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.41 5.89 7.01 -40.82 -0.29 5.61 16 34 H 0.03 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.08 1.99 6.93 -51.93 -0.36 1.63 16 39 H 0.38 4.96 9.12 45.56 0.42 5.37 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 44 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -37.53 369.46 -8.87 -46.41 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.75 Total: 7.67 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: -1.14 Total: 16.32 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.68 Total: -62.50 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.85 Total: -31.14 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.53 -8.87 -46.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084085528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.933 kcal (2) G-P(sol) polarization free energy of solvation -37.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds