Wall clock time and date at job start Fri Apr 10 2020 18:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47307 * 2 1 4 4 C 1.50695 * 109.47156 * 120.00452 * 2 1 3 5 5 O 1.21289 * 119.99956 * 119.99768 * 4 2 1 6 6 N 1.34774 * 120.00041 * 299.99829 * 4 2 1 7 7 C 1.46504 * 120.00171 * 180.02562 * 6 4 2 8 8 H 1.09004 * 110.77513 * 31.75742 * 7 6 4 9 9 C 1.54322 * 110.71963 * 268.52516 * 7 6 4 10 10 N 1.47019 * 107.27000 * 219.44383 * 9 7 6 11 11 C 1.36941 * 125.64983 * 178.98681 * 10 9 7 12 12 H 1.08007 * 119.99895 * 349.93777 * 11 10 9 13 13 C 1.38803 * 120.00097 * 169.94226 * 11 10 9 14 14 N 1.31626 * 120.00222 * 350.41471 * 13 11 10 15 15 Si 1.86804 * 120.00248 * 170.41635 * 13 11 10 16 16 H 1.48501 * 109.46952 * 94.13640 * 15 13 11 17 17 H 1.48489 * 109.47405 * 214.13908 * 15 13 11 18 18 H 1.48501 * 109.46750 * 334.14201 * 15 13 11 19 19 C 1.47425 * 108.70572 * 358.93568 * 10 9 7 20 20 C 1.54912 * 104.82655 * 24.13248 * 19 10 9 21 21 H 1.09008 * 111.03408 * 204.90198 * 20 19 10 22 22 O 1.42894 * 111.00705 * 81.06562 * 20 19 10 23 23 N 1.46506 * 109.47167 * 240.00411 * 2 1 3 24 24 C 1.45756 * 117.94803 * 119.99570 * 23 2 1 25 25 C 1.52921 * 110.48507 * 160.92737 * 24 23 2 26 26 C 1.53341 * 108.67386 * 50.75382 * 25 24 23 27 27 C 1.53067 * 108.42997 * 292.47033 * 26 25 24 28 28 C 1.33354 * 117.94346 * 299.73907 * 23 2 1 29 29 O 1.21286 * 118.24838 * 2.22299 * 28 23 2 30 30 H 1.08994 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46853 * 299.99582 * 1 2 3 32 32 H 1.09000 * 109.47081 * 59.99434 * 1 2 3 33 33 H 0.96998 * 120.00395 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.88100 * 338.85822 * 9 7 6 35 35 H 1.08998 * 109.88936 * 99.86531 * 9 7 6 36 36 H 0.96997 * 119.99587 * 179.97438 * 14 13 11 37 37 H 1.09001 * 110.36666 * 265.29433 * 19 10 9 38 38 H 1.08997 * 110.36623 * 142.96984 * 19 10 9 39 39 H 0.96704 * 113.99756 * 67.80213 * 22 20 19 40 40 H 1.08993 * 109.30016 * 281.24005 * 24 23 2 41 41 H 1.09003 * 109.29442 * 40.82580 * 24 23 2 42 42 H 1.09003 * 109.60042 * 170.51287 * 25 24 23 43 43 H 1.08998 * 109.60150 * 290.83679 * 25 24 23 44 44 H 1.09002 * 109.67188 * 52.20807 * 26 25 24 45 45 H 1.09005 * 109.67348 * 172.73369 * 26 25 24 46 46 H 1.09001 * 109.40339 * 169.03117 * 27 26 25 47 47 H 1.08999 * 109.39747 * 288.85739 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 1 3.1711 -1.3904 3.4659 9 6 1.1824 -2.0065 4.1181 10 7 1.1501 -1.9634 5.5873 11 6 0.3608 -2.7416 6.3915 12 1 -0.4239 -3.3439 5.9579 13 6 0.5693 -2.7564 7.7637 14 7 1.6354 -2.1769 8.2737 15 14 -0.6632 -3.5986 8.8867 16 1 -0.2253 -4.9941 9.1440 17 1 -0.7461 -2.8607 10.1726 18 1 -1.9980 -3.6108 8.2360 19 6 2.1091 -0.9445 6.0516 20 6 2.2591 0.0317 4.8581 21 1 3.2183 0.5485 4.8936 22 8 1.1783 0.9656 4.8212 23 7 2.0184 -0.6905 -1.1963 24 6 2.8530 0.0605 -2.1257 25 6 3.6412 -0.8914 -3.0263 26 6 2.6684 -1.9060 -3.6391 27 6 2.1400 -2.8066 -2.5199 28 6 1.6757 -1.9684 -1.3638 29 8 0.9460 -2.4796 -0.5410 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1489 0.5383 2.5436 34 1 0.1941 -1.7789 3.7188 35 1 1.5000 -2.9931 3.7808 36 1 1.7807 -2.1869 9.2327 37 1 3.0681 -1.4057 6.2874 38 1 1.7145 -0.4211 6.9225 39 1 1.1761 1.5940 5.5563 40 1 2.2207 0.6992 -2.7423 41 1 3.5511 0.6802 -1.5629 42 1 4.1272 -0.3248 -3.8207 43 1 4.3943 -1.4136 -2.4362 44 1 1.8378 -1.3799 -4.1098 45 1 3.1885 -2.5106 -4.3821 46 1 1.3079 -3.4016 -2.8963 47 1 2.9363 -3.4702 -2.1829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084085528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:58 Heat of formation + Delta-G solvation = -112.773974 kcal Electronic energy + Delta-G solvation = -29294.586139 eV Core-core repulsion = 25284.156821 eV Total energy + Delta-G solvation = -4010.429319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05229 -40.59299 -39.22109 -37.41020 -36.40701 -35.64140 -35.43891 -33.65261 -31.69113 -30.46970 -30.13966 -28.78439 -26.56452 -25.64352 -25.10665 -23.51357 -22.45206 -21.79809 -21.19844 -19.49831 -19.14491 -18.42019 -18.30287 -17.78303 -16.98373 -16.92816 -16.58943 -16.38009 -16.03923 -15.69650 -15.35958 -15.02023 -14.91744 -14.68983 -14.64440 -14.50139 -14.33318 -14.17446 -13.72944 -13.29379 -13.24082 -13.20045 -12.96823 -12.86517 -12.76441 -12.57151 -12.32695 -12.15880 -12.00774 -11.96808 -11.90206 -11.84625 -11.76586 -10.96541 -10.82975 -10.77518 -10.46222 -10.07753 -9.67379 -8.92494 -7.94462 -5.29446 1.42611 1.44134 1.53616 1.56444 1.70492 1.97528 2.29274 2.46887 3.16012 3.25469 3.53578 3.65034 3.78804 3.81447 3.86670 3.90799 3.93344 3.96691 4.05311 4.13469 4.24919 4.42914 4.52611 4.54689 4.62314 4.69165 4.72347 4.78856 4.81465 4.89905 4.94555 4.96511 5.09551 5.15063 5.26269 5.33302 5.35452 5.38212 5.48244 5.52234 5.57489 6.12419 6.53280 6.61169 6.89547 7.03005 7.24771 7.36227 7.66375 8.32597 9.16886 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.023286 B = 0.002971 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.141123 B = 9420.878720 C = 9922.748881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 H 0.156 0.844 4 C 0.500 3.500 5 O -0.574 6.574 6 N -0.696 5.696 7 C 0.158 3.842 8 H 0.090 0.910 9 C 0.135 3.865 10 N -0.614 5.614 11 C -0.251 4.251 12 H 0.067 0.933 13 C -0.055 4.055 14 N -0.944 5.944 15 Si 0.980 3.020 16 H -0.287 1.287 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.151 3.849 20 C 0.095 3.905 21 H 0.100 0.900 22 O -0.560 6.560 23 N -0.590 5.590 24 C 0.105 3.895 25 C -0.134 4.134 26 C -0.113 4.113 27 C -0.132 4.132 28 C 0.510 3.490 29 O -0.590 6.590 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.418 0.582 34 H 0.019 0.981 35 H -0.006 1.006 36 H 0.252 0.748 37 H 0.009 0.991 38 H 0.056 0.944 39 H 0.397 0.603 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 13.541 -25.347 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 H 0.173 0.827 4 C 0.287 3.713 5 O -0.453 6.453 6 N -0.349 5.349 7 C 0.051 3.949 8 H 0.108 0.892 9 C 0.008 3.992 10 N -0.340 5.340 11 C -0.380 4.380 12 H 0.085 0.915 13 C -0.249 4.249 14 N -0.592 5.592 15 Si 0.808 3.192 16 H -0.214 1.214 17 H -0.209 1.209 18 H -0.199 1.199 19 C 0.025 3.975 20 C 0.035 3.965 21 H 0.117 0.883 22 O -0.369 6.369 23 N -0.322 5.322 24 C -0.016 4.016 25 C -0.172 4.172 26 C -0.151 4.151 27 C -0.172 4.172 28 C 0.301 3.699 29 O -0.471 6.471 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.256 0.744 34 H 0.037 0.963 35 H 0.012 0.988 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.248 0.752 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.165 12.214 -25.393 28.484 hybrid contribution -0.581 -0.696 1.872 2.080 sum 3.585 11.518 -23.521 26.434 Atomic orbital electron populations 1.22125 0.92047 1.03357 1.04253 1.21098 0.96678 0.97585 0.82408 0.82716 1.21632 0.79441 0.84396 0.85851 1.90658 1.40142 1.27464 1.87010 1.45586 1.53528 1.31989 1.03812 1.21672 0.96770 0.92247 0.84185 0.89227 1.21573 0.96774 0.95732 0.85088 1.44550 1.46842 1.42589 1.00042 1.19320 1.09119 1.20462 0.89100 0.91542 1.25608 0.99578 1.01785 0.97937 1.70098 1.27678 1.49970 1.11423 0.85060 0.78525 0.77549 0.78107 1.21391 1.20865 1.19874 1.21997 0.91600 0.89006 0.94855 1.23244 0.90620 0.89331 0.93349 0.88261 1.86217 1.50468 1.47530 1.52648 1.47265 1.51441 1.11128 1.22411 1.21830 0.93798 0.94482 0.91490 1.21913 0.97758 0.97824 0.99706 1.21648 0.99878 0.97261 0.96268 1.21675 1.03110 0.98521 0.93911 1.20720 0.79580 0.82207 0.87443 1.90694 1.39188 1.71160 1.46033 0.93302 0.90241 0.88937 0.74411 0.96319 0.98810 0.93858 0.97306 0.92594 0.75224 0.88527 0.89558 0.86539 0.92576 0.89874 0.88736 0.88353 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.98 71.98 0.65 -2.90 16 2 C 0.13 2.89 3.02 44.24 0.13 3.03 16 3 H 0.16 1.98 7.79 -2.39 -0.02 1.96 16 4 C 0.50 16.60 6.41 87.66 0.56 17.17 16 5 O -0.57 -24.64 14.18 16.95 0.24 -24.40 16 6 N -0.70 -22.43 4.97 -436.92 -2.17 -24.60 16 7 C 0.16 6.28 3.20 46.18 0.15 6.42 16 8 H 0.09 3.77 7.55 -2.39 -0.02 3.76 16 9 C 0.14 6.81 6.99 86.73 0.61 7.42 16 10 N -0.61 -34.28 3.39 -692.00 -2.35 -36.63 16 11 C -0.25 -15.22 10.24 84.03 0.86 -14.36 16 12 H 0.07 4.02 7.85 -2.91 -0.02 4.00 16 13 C -0.06 -3.25 5.40 84.86 0.46 -2.79 16 14 N -0.94 -56.83 10.68 21.65 0.23 -56.60 16 15 Si 0.98 47.33 29.56 68.60 2.03 49.36 16 16 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 19 C 0.15 7.39 5.16 86.86 0.45 7.84 16 20 C 0.10 3.41 4.28 31.98 0.14 3.54 16 21 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 22 O -0.56 -17.50 12.24 -148.98 -1.82 -19.32 16 23 N -0.59 -12.65 2.61 -806.81 -2.11 -14.75 16 24 C 0.10 1.14 6.25 86.49 0.54 1.68 16 25 C -0.13 -1.23 6.02 30.68 0.18 -1.05 16 26 C -0.11 -1.16 6.03 30.73 0.19 -0.97 16 27 C -0.13 -2.63 6.03 29.70 0.18 -2.45 16 28 C 0.51 14.53 6.12 87.71 0.54 15.07 16 29 O -0.59 -23.54 12.86 16.96 0.22 -23.32 16 30 H 0.05 1.54 5.86 -2.39 -0.01 1.53 16 31 H 0.08 1.59 7.56 -2.39 -0.02 1.57 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.42 11.29 7.01 -92.71 -0.65 10.64 16 34 H 0.02 0.97 8.03 -2.39 -0.02 0.95 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 38 H 0.06 2.95 6.93 -2.39 -0.02 2.93 16 39 H 0.40 9.30 9.12 -74.05 -0.68 8.63 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.76 8.04 -2.39 -0.02 0.74 16 42 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 44 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 45 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -88.34 369.46 -0.44 -88.78 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.33 Total: 23.84 kcal Atomic # 6 Polarization: 32.02 SS G_CDS: 5.63 Total: 37.65 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -6.39 Total: -132.58 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -1.36 Total: -67.04 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -88.34 -0.44 -88.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084085528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.994 kcal (2) G-P(sol) polarization free energy of solvation -88.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds