Wall clock time and date at job start Fri Apr 10 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46763 * 2 1 4 4 C 1.50697 * 109.46850 * 239.99767 * 2 1 3 5 5 O 1.21287 * 119.99703 * 239.99648 * 4 2 1 6 6 N 1.34773 * 120.00021 * 60.00316 * 4 2 1 7 7 C 1.46506 * 119.99762 * 179.97438 * 6 4 2 8 8 H 1.08998 * 110.64052 * 36.68775 * 7 6 4 9 9 C 1.54323 * 110.71909 * 273.54438 * 7 6 4 10 10 N 1.47021 * 107.27226 * 263.82623 * 9 7 6 11 11 C 1.36933 * 125.65074 * 181.02076 * 10 9 7 12 12 H 1.08005 * 119.99933 * 19.60441 * 11 10 9 13 13 C 1.38808 * 120.00365 * 199.60023 * 11 10 9 14 14 N 1.31627 * 119.99820 * 28.57549 * 13 11 10 15 15 Si 1.86799 * 120.00377 * 208.29906 * 13 11 10 16 16 H 1.48493 * 109.47213 * 180.27421 * 15 13 11 17 17 H 1.48503 * 109.46751 * 300.27831 * 15 13 11 18 18 H 1.48506 * 109.47065 * 60.27385 * 15 13 11 19 19 C 1.47431 * 108.70053 * 1.29310 * 10 9 7 20 20 C 1.55130 * 104.72019 * 335.54902 * 19 10 9 21 21 H 1.09004 * 111.22643 * 279.17486 * 20 19 10 22 22 O 1.42896 * 110.90377 * 155.28096 * 20 19 10 23 23 N 1.46504 * 109.46706 * 119.99489 * 2 1 3 24 24 C 1.45753 * 117.94445 * 239.73505 * 23 2 1 25 25 C 1.53106 * 110.38332 * 160.75013 * 24 23 2 26 26 C 1.53350 * 108.52927 * 51.11429 * 25 24 23 27 27 C 1.53073 * 108.42506 * 292.31072 * 26 25 24 28 28 C 1.33348 * 117.94619 * 60.00768 * 23 2 1 29 29 O 1.21284 * 118.24877 * 2.18693 * 28 23 2 30 30 H 1.09006 * 109.47354 * 60.00158 * 1 2 3 31 31 H 1.09004 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47374 * 300.00304 * 1 2 3 33 33 H 0.96993 * 120.00007 * 359.97438 * 6 4 2 34 34 H 1.09007 * 109.88115 * 144.41558 * 9 7 6 35 35 H 1.08999 * 110.01102 * 23.32342 * 9 7 6 36 36 H 0.96997 * 119.99651 * 5.39997 * 14 13 11 37 37 H 1.09002 * 110.36646 * 94.47919 * 19 10 9 38 38 H 1.08999 * 110.36470 * 216.80200 * 19 10 9 39 39 H 0.96694 * 114.00517 * 67.96993 * 22 20 19 40 40 H 1.09002 * 109.30200 * 281.24032 * 24 23 2 41 41 H 1.08998 * 109.30171 * 40.61903 * 24 23 2 42 42 H 1.08993 * 109.80610 * 291.32405 * 25 24 23 43 43 H 1.08997 * 109.67900 * 170.82783 * 25 24 23 44 44 H 1.08996 * 109.67217 * 172.57605 * 26 25 24 45 45 H 1.09005 * 109.66943 * 52.04585 * 26 25 24 46 46 H 1.08993 * 109.39600 * 288.77448 * 27 26 25 47 47 H 1.09000 * 109.33129 * 168.98703 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 1 2.2119 -2.0187 -3.4922 9 6 3.5957 -0.4250 -4.0447 10 7 3.4074 0.6040 -5.0777 11 6 4.4077 1.2957 -5.7070 12 1 5.4157 0.9077 -5.7061 13 6 4.1264 2.4954 -6.3460 14 7 3.1350 3.2502 -5.9219 15 14 5.1595 3.0423 -7.8030 16 1 4.6627 4.3509 -8.2987 17 1 6.5769 3.1783 -7.3814 18 1 5.0603 2.0323 -8.8872 19 6 1.9628 0.7725 -5.3192 20 6 1.3308 -0.5765 -4.8864 21 1 1.4314 -1.3285 -5.6689 22 8 -0.0395 -0.4032 -4.5197 23 7 2.0182 -0.6905 1.1963 24 6 2.8577 0.0588 2.1227 25 6 2.8767 -0.6211 3.4944 26 6 3.2230 -2.1022 3.2994 27 6 2.0607 -2.7787 2.5684 28 6 1.6713 -1.9668 1.3665 29 8 1.0052 -2.5004 0.5048 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1488 0.5384 -2.5435 34 1 4.1939 -1.2447 -4.4428 35 1 4.0918 0.0080 -3.1761 36 1 2.6513 3.0082 -5.1167 37 1 1.5698 1.5897 -4.7142 38 1 1.7740 0.9575 -6.3767 39 1 -0.6187 -0.1746 -5.2594 40 1 3.8725 0.1105 1.7282 41 1 2.4638 1.0696 2.2289 42 1 1.8969 -0.5333 3.9637 43 1 3.6288 -0.1499 4.1272 44 1 3.3711 -2.5752 4.2702 45 1 4.1322 -2.1912 2.7048 46 1 1.2078 -2.8602 3.2421 47 1 2.3663 -3.7750 2.2489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084085529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:02 Heat of formation + Delta-G solvation = -88.620684 kcal Electronic energy + Delta-G solvation = -29515.695933 eV Core-core repulsion = 25506.313980 eV Total energy + Delta-G solvation = -4009.381953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98402 -39.29742 -37.74133 -36.47637 -35.27501 -34.67421 -33.82037 -31.87908 -30.58815 -29.59468 -28.23840 -27.30358 -24.94977 -24.48732 -24.04426 -22.56187 -20.71660 -20.51431 -19.74666 -18.71689 -17.62000 -17.26792 -16.99193 -16.82754 -15.96789 -15.48212 -15.33275 -14.70988 -14.64802 -14.47299 -14.27697 -13.83394 -13.77494 -13.62519 -13.50063 -13.31636 -12.95499 -12.57669 -12.48591 -12.32943 -12.14624 -12.02508 -11.63555 -11.58958 -11.33386 -11.24432 -11.21995 -11.14166 -10.79069 -10.61126 -10.37168 -10.05590 -9.79708 -9.58992 -9.45436 -9.38234 -8.68174 -8.54517 -8.43669 -6.99534 -6.16615 -3.22372 2.66089 2.89291 3.03756 3.47121 3.50708 3.57930 3.68671 4.33131 4.40808 4.46791 4.48148 4.58069 4.60623 4.91271 5.01186 5.03266 5.09982 5.15032 5.21102 5.26249 5.31260 5.35032 5.45922 5.51174 5.56712 5.61221 5.62409 5.64434 5.67112 5.73684 5.91585 6.02909 6.07439 6.16653 6.37649 6.45618 6.61654 6.70804 6.84432 7.02766 7.47045 7.73674 7.90181 7.93333 8.28756 8.43148 8.65561 8.94924 9.74653 10.29051 11.15594 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.003238 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.424021 B = 8645.860389 C = 9231.482319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.125 3.875 3 H 0.109 0.891 4 C 0.513 3.487 5 O -0.530 6.530 6 N -0.700 5.700 7 C 0.149 3.851 8 H 0.092 0.908 9 C 0.126 3.874 10 N -0.597 5.597 11 C -0.338 4.338 12 H 0.065 0.935 13 C -0.024 4.024 14 N -0.913 5.913 15 Si 1.065 2.935 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.293 1.293 19 C 0.119 3.881 20 C 0.074 3.926 21 H 0.075 0.925 22 O -0.561 6.561 23 N -0.591 5.591 24 C 0.113 3.887 25 C -0.133 4.133 26 C -0.125 4.125 27 C -0.130 4.130 28 C 0.524 3.476 29 O -0.532 6.532 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.267 0.733 37 H 0.035 0.965 38 H 0.052 0.948 39 H 0.378 0.622 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 -5.979 17.738 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.127 0.873 4 C 0.297 3.703 5 O -0.405 6.405 6 N -0.351 5.351 7 C 0.044 3.956 8 H 0.110 0.890 9 C 0.000 4.000 10 N -0.326 5.326 11 C -0.466 4.466 12 H 0.083 0.917 13 C -0.226 4.226 14 N -0.553 5.553 15 Si 0.894 3.106 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.221 1.221 19 C -0.007 4.007 20 C 0.014 3.986 21 H 0.093 0.907 22 O -0.365 6.365 23 N -0.325 5.325 24 C -0.010 4.010 25 C -0.170 4.170 26 C -0.162 4.162 27 C -0.170 4.170 28 C 0.312 3.688 29 O -0.409 6.409 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.225 0.775 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.764 -5.936 16.774 18.420 hybrid contribution -0.361 -0.497 0.581 0.846 sum -5.125 -6.432 17.355 19.205 Atomic orbital electron populations 1.22144 0.92430 1.05022 1.02513 1.20936 0.96357 0.96407 0.84518 0.87328 1.20510 0.80451 0.84797 0.84524 1.90656 1.37873 1.25647 1.86369 1.45560 1.53156 1.31911 1.04515 1.21912 0.93461 0.97055 0.83201 0.89050 1.21794 0.93302 0.92666 0.92286 1.44392 1.01100 1.44412 1.42656 1.19736 0.90327 1.03732 1.32762 0.91708 1.25798 1.01441 0.91520 1.03837 1.70810 1.24439 1.35509 1.24590 0.83520 0.74905 0.75940 0.76189 1.21074 1.21943 1.22056 1.22193 0.85789 0.93201 0.99542 1.23470 0.80891 0.98587 0.95663 0.90750 1.86403 1.18237 1.93141 1.38720 1.47050 1.51508 1.11693 1.22200 1.21486 0.95100 0.95325 0.89123 1.21888 1.03003 0.96108 0.96043 1.21669 0.98429 0.95156 1.00987 1.21621 0.99923 1.00028 0.95447 1.19947 0.79705 0.81127 0.88009 1.90695 1.39140 1.68519 1.42506 0.90928 0.89618 0.91924 0.76300 0.94593 0.94985 0.92169 0.94768 0.92935 0.77526 0.91552 0.90598 0.90929 0.89740 0.90694 0.90897 0.88719 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.98 37.16 0.33 -1.69 16 2 C 0.13 1.72 3.02 -69.08 -0.21 1.51 16 3 H 0.11 1.24 7.79 -51.93 -0.40 0.84 16 4 C 0.51 9.25 6.38 -10.99 -0.07 9.18 16 5 O -0.53 -11.41 14.14 -16.36 -0.23 -11.64 16 6 N -0.70 -12.51 4.67 -52.03 -0.24 -12.75 16 7 C 0.15 2.91 3.14 -66.10 -0.21 2.70 16 8 H 0.09 1.84 7.69 -51.93 -0.40 1.44 16 9 C 0.13 2.83 6.98 -3.07 -0.02 2.81 16 10 N -0.60 -15.11 3.26 -169.93 -0.55 -15.67 16 11 C -0.34 -9.55 10.00 -15.06 -0.15 -9.70 16 12 H 0.07 1.85 7.97 -52.48 -0.42 1.43 16 13 C -0.02 -0.68 5.09 -17.43 -0.09 -0.76 16 14 N -0.91 -26.95 13.02 55.49 0.72 -26.22 16 15 Si 1.07 25.09 30.00 -169.99 -5.10 19.99 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.12 2.65 5.09 -2.41 -0.01 2.64 16 20 C 0.07 1.35 4.23 -24.47 -0.10 1.25 16 21 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 22 O -0.56 -8.80 12.63 -35.23 -0.44 -9.24 16 23 N -0.59 -7.49 2.61 -168.58 -0.44 -7.92 16 24 C 0.11 1.00 6.26 -4.39 -0.03 0.97 16 25 C -0.13 -0.86 6.03 -26.50 -0.16 -1.02 16 26 C -0.12 -0.94 6.03 -26.51 -0.16 -1.10 16 27 C -0.13 -1.30 6.03 -28.10 -0.17 -1.47 16 28 C 0.52 7.51 6.19 -11.87 -0.07 7.44 16 29 O -0.53 -9.91 12.77 -16.36 -0.21 -10.12 16 30 H 0.07 0.85 7.56 -51.93 -0.39 0.45 16 31 H 0.08 1.30 6.00 -51.93 -0.31 0.99 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 6.72 7.62 -40.82 -0.31 6.41 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.77 8.05 -51.93 -0.42 0.36 16 36 H 0.27 7.89 6.18 -40.82 -0.25 7.64 16 37 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 38 H 0.05 1.26 8.07 -51.93 -0.42 0.84 16 39 H 0.38 4.36 9.12 45.56 0.42 4.78 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 42 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -36.84 370.14 -8.74 -45.58 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.70 Total: 9.66 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -1.12 Total: 12.75 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.51 Total: -62.57 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.89 Total: -31.00 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.10 Total: 19.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.84 -8.74 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084085529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.036 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds