Wall clock time and date at job start Fri Apr 10 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46763 * 2 1 4 4 C 1.50697 * 109.46850 * 239.99767 * 2 1 3 5 5 O 1.21287 * 119.99703 * 239.99648 * 4 2 1 6 6 N 1.34773 * 120.00021 * 60.00316 * 4 2 1 7 7 C 1.46506 * 119.99762 * 179.97438 * 6 4 2 8 8 H 1.08998 * 110.64052 * 36.68775 * 7 6 4 9 9 C 1.54323 * 110.71909 * 273.54438 * 7 6 4 10 10 N 1.47021 * 107.27226 * 263.82623 * 9 7 6 11 11 C 1.36933 * 125.65074 * 181.02076 * 10 9 7 12 12 H 1.08005 * 119.99933 * 19.60441 * 11 10 9 13 13 C 1.38808 * 120.00365 * 199.60023 * 11 10 9 14 14 N 1.31627 * 119.99820 * 28.57549 * 13 11 10 15 15 Si 1.86799 * 120.00377 * 208.29906 * 13 11 10 16 16 H 1.48493 * 109.47213 * 180.27421 * 15 13 11 17 17 H 1.48503 * 109.46751 * 300.27831 * 15 13 11 18 18 H 1.48506 * 109.47065 * 60.27385 * 15 13 11 19 19 C 1.47431 * 108.70053 * 1.29310 * 10 9 7 20 20 C 1.55130 * 104.72019 * 335.54902 * 19 10 9 21 21 H 1.09004 * 111.22643 * 279.17486 * 20 19 10 22 22 O 1.42896 * 110.90377 * 155.28096 * 20 19 10 23 23 N 1.46504 * 109.46706 * 119.99489 * 2 1 3 24 24 C 1.45753 * 117.94445 * 239.73505 * 23 2 1 25 25 C 1.53106 * 110.38332 * 160.75013 * 24 23 2 26 26 C 1.53350 * 108.52927 * 51.11429 * 25 24 23 27 27 C 1.53073 * 108.42506 * 292.31072 * 26 25 24 28 28 C 1.33348 * 117.94619 * 60.00768 * 23 2 1 29 29 O 1.21284 * 118.24877 * 2.18693 * 28 23 2 30 30 H 1.09006 * 109.47354 * 60.00158 * 1 2 3 31 31 H 1.09004 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47374 * 300.00304 * 1 2 3 33 33 H 0.96993 * 120.00007 * 359.97438 * 6 4 2 34 34 H 1.09007 * 109.88115 * 144.41558 * 9 7 6 35 35 H 1.08999 * 110.01102 * 23.32342 * 9 7 6 36 36 H 0.96997 * 119.99651 * 5.39997 * 14 13 11 37 37 H 1.09002 * 110.36646 * 94.47919 * 19 10 9 38 38 H 1.08999 * 110.36470 * 216.80200 * 19 10 9 39 39 H 0.96694 * 114.00517 * 67.96993 * 22 20 19 40 40 H 1.09002 * 109.30200 * 281.24032 * 24 23 2 41 41 H 1.08998 * 109.30171 * 40.61903 * 24 23 2 42 42 H 1.08993 * 109.80610 * 291.32405 * 25 24 23 43 43 H 1.08997 * 109.67900 * 170.82783 * 25 24 23 44 44 H 1.08996 * 109.67217 * 172.57605 * 26 25 24 45 45 H 1.09005 * 109.66943 * 52.04585 * 26 25 24 46 46 H 1.08993 * 109.39600 * 288.77448 * 27 26 25 47 47 H 1.09000 * 109.33129 * 168.98703 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 1 2.2119 -2.0187 -3.4922 9 6 3.5957 -0.4250 -4.0447 10 7 3.4074 0.6040 -5.0777 11 6 4.4077 1.2957 -5.7070 12 1 5.4157 0.9077 -5.7061 13 6 4.1264 2.4954 -6.3460 14 7 3.1350 3.2502 -5.9219 15 14 5.1595 3.0423 -7.8030 16 1 4.6627 4.3509 -8.2987 17 1 6.5769 3.1783 -7.3814 18 1 5.0603 2.0323 -8.8872 19 6 1.9628 0.7725 -5.3192 20 6 1.3308 -0.5765 -4.8864 21 1 1.4314 -1.3285 -5.6689 22 8 -0.0395 -0.4032 -4.5197 23 7 2.0182 -0.6905 1.1963 24 6 2.8577 0.0588 2.1227 25 6 2.8767 -0.6211 3.4944 26 6 3.2230 -2.1022 3.2994 27 6 2.0607 -2.7787 2.5684 28 6 1.6713 -1.9668 1.3665 29 8 1.0052 -2.5004 0.5048 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1488 0.5384 -2.5435 34 1 4.1939 -1.2447 -4.4428 35 1 4.0918 0.0080 -3.1761 36 1 2.6513 3.0082 -5.1167 37 1 1.5698 1.5897 -4.7142 38 1 1.7740 0.9575 -6.3767 39 1 -0.6187 -0.1746 -5.2594 40 1 3.8725 0.1105 1.7282 41 1 2.4638 1.0696 2.2289 42 1 1.8969 -0.5333 3.9637 43 1 3.6288 -0.1499 4.1272 44 1 3.3711 -2.5752 4.2702 45 1 4.1322 -2.1912 2.7048 46 1 1.2078 -2.8602 3.2421 47 1 2.3663 -3.7750 2.2489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084085529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:02 Heat of formation + Delta-G solvation = -116.458613 kcal Electronic energy + Delta-G solvation = -29516.903076 eV Core-core repulsion = 25506.313980 eV Total energy + Delta-G solvation = -4010.589097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10035 -40.74988 -39.25399 -37.43130 -36.87085 -35.67037 -35.47861 -33.68250 -31.68079 -30.45547 -29.97810 -29.04742 -26.36191 -25.76292 -25.19782 -23.56142 -22.41331 -21.91607 -21.28969 -19.77761 -19.54530 -18.58121 -18.30110 -17.90781 -17.22541 -16.70873 -16.60972 -16.24499 -16.08951 -15.58509 -15.42616 -15.33265 -15.26694 -14.86210 -14.67899 -14.43464 -14.27474 -14.17197 -14.08203 -13.45693 -13.30332 -13.20787 -13.00159 -12.89508 -12.69976 -12.56715 -12.50929 -12.12321 -11.97648 -11.90080 -11.85707 -11.81574 -11.74311 -11.05272 -10.90681 -10.56263 -10.50765 -10.13028 -9.71604 -9.09324 -8.38651 -5.42528 1.56915 1.57734 1.64417 1.64858 1.84501 1.92866 2.25881 2.58368 2.91718 3.14328 3.46958 3.55318 3.60071 3.73380 3.77587 3.83011 3.88638 3.94322 3.98141 4.08334 4.08815 4.32485 4.43415 4.46063 4.50146 4.56018 4.67403 4.69890 4.73587 4.80376 4.88094 4.88555 4.91111 5.05021 5.07192 5.08922 5.18281 5.35117 5.40852 5.46179 5.61134 6.25498 6.47916 6.53515 6.74180 6.81883 7.18064 7.31258 7.61595 8.18289 8.92472 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.003238 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.424021 B = 8645.860389 C = 9231.482319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 H 0.135 0.865 4 C 0.505 3.495 5 O -0.570 6.570 6 N -0.696 5.696 7 C 0.156 3.844 8 H 0.087 0.913 9 C 0.130 3.870 10 N -0.614 5.614 11 C -0.357 4.357 12 H 0.054 0.946 13 C -0.067 4.067 14 N -0.933 5.933 15 Si 1.117 2.883 16 H -0.287 1.287 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.127 3.873 20 C 0.100 3.900 21 H 0.091 0.909 22 O -0.557 6.557 23 N -0.590 5.590 24 C 0.101 3.899 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.128 4.128 28 C 0.510 3.490 29 O -0.585 6.585 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.033 0.967 35 H 0.010 0.990 36 H 0.256 0.744 37 H 0.021 0.979 38 H 0.034 0.966 39 H 0.400 0.600 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.117 0.883 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 -5.280 19.132 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 H 0.153 0.847 4 C 0.291 3.709 5 O -0.449 6.449 6 N -0.348 5.348 7 C 0.049 3.951 8 H 0.105 0.895 9 C 0.004 3.996 10 N -0.342 5.342 11 C -0.485 4.485 12 H 0.072 0.928 13 C -0.265 4.265 14 N -0.574 5.574 15 Si 0.941 3.059 16 H -0.213 1.213 17 H -0.203 1.203 18 H -0.206 1.206 19 C 0.001 3.999 20 C 0.039 3.961 21 H 0.109 0.891 22 O -0.364 6.364 23 N -0.322 5.322 24 C -0.020 4.020 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.167 4.167 28 C 0.300 3.700 29 O -0.465 6.465 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.245 0.755 34 H 0.051 0.949 35 H 0.028 0.972 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.250 0.750 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.074 0.926 46 H 0.135 0.865 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.205 -5.218 18.202 19.638 hybrid contribution -0.224 -0.723 0.179 0.778 sum -5.428 -5.941 18.381 20.066 Atomic orbital electron populations 1.22052 0.91187 1.03571 1.04190 1.21061 0.97282 0.96983 0.83017 0.84726 1.21411 0.79479 0.84400 0.85574 1.90627 1.39699 1.27543 1.86995 1.45552 1.53017 1.31969 1.04269 1.21679 0.92169 0.96717 0.84507 0.89527 1.21771 0.95220 0.91786 0.90840 1.44578 1.01983 1.44391 1.43274 1.19958 0.90897 1.04219 1.33390 0.92783 1.27174 1.02030 0.91598 1.05668 1.70920 1.25536 1.36314 1.24661 0.82836 0.74157 0.75582 0.73367 1.21323 1.20348 1.20596 1.22127 0.84508 0.95133 0.98115 1.23090 0.81795 0.96232 0.94937 0.89140 1.86377 1.16967 1.93010 1.40063 1.47248 1.51261 1.11597 1.22086 1.21827 0.94023 0.96522 0.89635 1.21907 1.04602 0.94937 0.94755 1.21677 0.96384 0.96167 1.01588 1.21664 1.01836 0.98907 0.94304 1.20790 0.78852 0.81672 0.88638 1.90666 1.41568 1.69710 1.44601 0.90345 0.92519 0.89096 0.75533 0.94871 0.97180 0.93357 0.96122 0.94792 0.74978 0.92587 0.88083 0.89605 0.87173 0.87893 0.92637 0.86460 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.98 71.98 0.65 -2.95 16 2 C 0.12 3.31 3.02 44.24 0.13 3.45 16 3 H 0.14 2.84 7.79 -2.39 -0.02 2.82 16 4 C 0.50 18.50 6.38 87.66 0.56 19.06 16 5 O -0.57 -25.44 14.14 17.90 0.25 -25.19 16 6 N -0.70 -25.09 4.67 -436.92 -2.04 -27.13 16 7 C 0.16 6.13 3.14 46.18 0.14 6.28 16 8 H 0.09 3.54 7.69 -2.39 -0.02 3.52 16 9 C 0.13 6.02 6.98 86.73 0.61 6.62 16 10 N -0.61 -31.69 3.26 -691.53 -2.26 -33.95 16 11 C -0.36 -20.48 10.00 84.03 0.84 -19.64 16 12 H 0.05 3.15 7.97 -2.91 -0.02 3.12 16 13 C -0.07 -3.82 5.09 84.86 0.43 -3.39 16 14 N -0.93 -55.54 13.02 21.65 0.28 -55.26 16 15 Si 1.12 50.45 30.00 68.60 2.06 52.51 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.13 5.71 5.09 86.93 0.44 6.16 16 20 C 0.10 3.58 4.23 32.06 0.14 3.71 16 21 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 22 O -0.56 -16.54 12.63 -148.98 -1.88 -18.42 16 23 N -0.59 -14.41 2.61 -806.45 -2.10 -16.51 16 24 C 0.10 1.58 6.26 86.56 0.54 2.12 16 25 C -0.12 -1.22 6.03 30.75 0.19 -1.03 16 26 C -0.12 -1.56 6.03 30.74 0.19 -1.37 16 27 C -0.13 -2.44 6.03 29.71 0.18 -2.26 16 28 C 0.51 14.63 6.19 87.72 0.54 15.18 16 29 O -0.59 -22.50 12.77 17.91 0.23 -22.27 16 30 H 0.08 1.72 7.56 -2.38 -0.02 1.71 16 31 H 0.06 1.72 6.00 -2.38 -0.01 1.71 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.41 13.54 7.62 -92.71 -0.71 12.84 16 34 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.01 0.51 8.05 -2.39 -0.02 0.49 16 36 H 0.26 15.42 6.18 -92.71 -0.57 14.84 16 37 H 0.02 1.00 6.81 -2.39 -0.02 0.99 16 38 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 39 H 0.40 8.30 9.12 -74.06 -0.68 7.62 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.08 8.03 -2.39 -0.02 1.06 16 42 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 43 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 0.92 8.12 -2.38 -0.02 0.90 16 46 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -83.07 370.14 -0.08 -83.15 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.19 Total: 31.13 kcal Atomic # 6 Polarization: 26.37 SS G_CDS: 5.57 Total: 31.94 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.12 Total: -132.85 kcal Atomic # 8 Polarization: -64.48 SS G_CDS: -1.40 Total: -65.88 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.06 Total: 52.51 kcal Total: -83.07 -0.08 -83.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084085529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.308 kcal (2) G-P(sol) polarization free energy of solvation -83.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds