Wall clock time and date at job start Fri Apr 10 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 119.99594 * 2 1 4 4 N 1.34777 * 119.99966 * 179.97438 * 2 1 3 5 5 C 1.47152 * 120.98326 * 7.31793 * 4 2 1 6 6 C 1.53290 * 108.38482 * 230.55440 * 5 4 2 7 7 O 1.42961 * 109.22254 * 307.69950 * 6 5 4 8 8 C 1.42958 * 114.16877 * 62.58068 * 7 6 5 9 9 C 1.47153 * 120.97884 * 187.33882 * 4 2 1 10 10 H 1.09004 * 109.71010 * 249.17972 * 9 4 2 11 11 C 1.50697 * 109.68312 * 9.72015 * 9 4 2 12 12 O 1.21278 * 120.00014 * 69.51306 * 11 9 4 13 13 N 1.34775 * 119.99863 * 249.50683 * 11 9 4 14 14 C 1.46507 * 119.99778 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47090 * 179.97438 * 14 13 11 16 16 H 1.08998 * 112.84961 * 43.80049 * 15 14 13 17 17 C 1.53781 * 113.61312 * 174.99482 * 15 14 13 18 18 C 1.53787 * 87.07747 * 139.98326 * 17 15 14 19 19 H 1.08994 * 113.61779 * 89.12087 * 18 17 15 20 20 N 1.46501 * 113.61339 * 220.02399 * 18 17 15 21 21 C 1.36936 * 120.00149 * 205.00298 * 20 18 17 22 22 H 1.08003 * 119.99715 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00212 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00069 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99796 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47279 * 0.02562 * 25 23 21 27 27 H 1.48492 * 109.46962 * 120.00350 * 25 23 21 28 28 H 1.48500 * 109.46974 * 240.00102 * 25 23 21 29 29 C 1.53784 * 113.61360 * 272.49650 * 15 14 13 30 30 H 1.09010 * 109.47071 * 185.49855 * 1 2 3 31 31 H 1.08996 * 109.47631 * 305.50597 * 1 2 3 32 32 H 1.09004 * 109.47101 * 65.50639 * 1 2 3 33 33 H 1.08997 * 109.68088 * 110.83073 * 5 4 2 34 34 H 1.08995 * 109.70897 * 350.29453 * 5 4 2 35 35 H 1.08997 * 109.51407 * 187.77520 * 6 5 4 36 36 H 1.09002 * 109.51243 * 67.62258 * 6 5 4 37 37 H 1.09000 * 109.51663 * 177.49542 * 8 7 6 38 38 H 1.09003 * 109.51642 * 57.34664 * 8 7 6 39 39 H 0.96994 * 120.00143 * 0.02562 * 13 11 9 40 40 H 1.09000 * 109.47102 * 59.99839 * 14 13 11 41 41 H 1.08998 * 109.46569 * 299.99794 * 14 13 11 42 42 H 1.09001 * 113.61321 * 25.43888 * 17 15 14 43 43 H 1.08996 * 113.69029 * 254.53688 * 17 15 14 44 44 H 0.97007 * 120.00179 * 24.99189 * 20 18 17 45 45 H 0.96993 * 120.00008 * 179.97438 * 24 23 21 46 46 H 1.08998 * 113.61426 * 105.47202 * 29 15 14 47 47 H 1.08997 * 113.61261 * 334.56280 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4760 -2.4490 -0.1596 6 6 1.9253 -3.3913 0.9628 7 8 3.3535 -3.4505 0.9842 8 6 3.9869 -2.2009 1.2685 9 6 3.6432 -1.1975 0.1617 10 1 4.1098 -1.5081 -0.7732 11 6 4.1399 0.1724 0.5462 12 8 3.8856 0.6239 1.6427 13 7 4.8668 0.8956 -0.3284 14 6 5.3502 2.2271 0.0457 15 6 6.1426 2.8273 -1.1174 16 1 5.6575 2.6776 -2.0819 17 6 6.5926 4.2773 -0.8728 18 6 7.9239 3.8936 -1.5403 19 1 7.9271 4.0351 -2.6210 20 7 9.0980 4.4757 -0.8854 21 6 10.2522 4.6704 -1.5961 22 1 10.2970 4.3944 -2.6393 23 6 11.3645 5.2225 -0.9757 24 7 11.3097 5.5593 0.2954 25 14 12.9392 5.4873 -1.9451 26 1 12.7422 5.0298 -3.3441 27 1 13.2859 6.9312 -1.9413 28 1 14.0412 4.7121 -1.3207 29 6 7.6325 2.4465 -1.1092 30 1 -0.3634 -1.0230 0.0985 31 1 -0.3634 0.5968 0.8365 32 1 -0.3633 0.4261 -0.9352 33 1 1.7237 -2.8858 -1.1270 34 1 0.4000 -2.2874 -0.0946 35 1 1.5222 -4.3882 0.7844 36 1 1.5621 -3.0168 1.9199 37 1 5.0671 -2.3412 1.3100 38 1 3.6313 -1.8220 2.2267 39 1 5.0699 0.5346 -1.2054 40 1 5.9948 2.1470 0.9210 41 1 4.5010 2.8700 0.2774 42 1 6.6908 4.5319 0.1826 43 1 6.0191 5.0146 -1.4345 44 1 9.0577 4.7235 0.0516 45 1 12.0870 5.9447 0.7289 46 1 7.8976 1.7047 -1.8626 47 1 8.0148 2.2006 -0.1186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086275928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:38 Heat of formation + Delta-G solvation = -64.729369 kcal Electronic energy + Delta-G solvation = -28140.194435 eV Core-core repulsion = 24131.848487 eV Total energy + Delta-G solvation = -4008.345948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30998 -39.14721 -38.67247 -38.16729 -35.26490 -34.52832 -33.24077 -32.49626 -30.28670 -30.19984 -28.20800 -27.28052 -25.04592 -24.95352 -23.74965 -22.70076 -21.28127 -20.87703 -19.55139 -18.95753 -17.86082 -17.32044 -17.03862 -16.91611 -16.39615 -16.03567 -15.59211 -15.43380 -15.15252 -14.93241 -14.61905 -14.38544 -14.08416 -13.99718 -13.69147 -13.39073 -13.09791 -12.87933 -12.68791 -12.53441 -12.35100 -11.92144 -11.81673 -11.72909 -11.49354 -11.30007 -11.18004 -10.82551 -10.75757 -10.46739 -10.16329 -10.07648 -10.01412 -9.77094 -9.68554 -9.40617 -9.10162 -8.85503 -8.78151 -6.92609 -5.75442 -3.03998 2.04203 2.26618 3.00020 3.03679 3.42271 3.44267 3.49581 3.52076 4.06139 4.19210 4.28301 4.49368 4.51110 4.60896 4.61717 4.68332 4.82051 4.92954 4.98935 5.10552 5.13025 5.13155 5.21912 5.32873 5.36822 5.41781 5.51102 5.61748 5.78374 5.92998 5.95179 6.09305 6.17841 6.36081 6.40039 6.43878 6.52509 6.59465 6.67379 6.82468 6.90942 7.17915 7.60416 7.72148 7.72842 8.35510 8.43233 9.54166 10.13226 10.47558 11.47124 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.002213 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.527275 B =12651.592159 C =13216.092491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.505 6.505 4 N -0.611 5.611 5 C 0.070 3.930 6 C 0.043 3.957 7 O -0.373 6.373 8 C 0.062 3.938 9 C 0.091 3.909 10 H 0.095 0.905 11 C 0.537 3.463 12 O -0.538 6.538 13 N -0.713 5.713 14 C 0.141 3.859 15 C -0.126 4.126 16 H 0.086 0.914 17 C -0.142 4.142 18 C 0.166 3.834 19 H 0.075 0.925 20 N -0.713 5.713 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.160 4.160 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.052 0.948 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.763 -20.479 -1.934 32.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.378 6.378 4 N -0.350 5.350 5 C -0.053 4.053 6 C -0.035 4.035 7 O -0.291 6.291 8 C -0.016 4.016 9 C -0.015 4.015 10 H 0.113 0.887 11 C 0.322 3.678 12 O -0.415 6.415 13 N -0.364 5.364 14 C 0.018 3.982 15 C -0.145 4.145 16 H 0.104 0.896 17 C -0.182 4.182 18 C 0.054 3.946 19 H 0.093 0.907 20 N -0.351 5.351 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.201 4.201 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.228 0.772 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.348 -19.653 -1.294 32.101 hybrid contribution 0.739 0.153 -0.651 0.997 sum -24.610 -19.499 -1.945 31.459 Atomic orbital electron populations 1.21980 0.91065 1.04435 1.05688 1.20973 0.90924 0.82893 0.75472 1.90784 1.68657 1.30397 1.48004 1.48180 1.05657 1.06843 1.74281 1.22644 0.98459 0.83703 1.00451 1.23044 0.82032 1.00607 0.97823 1.88008 1.18656 1.30419 1.91992 1.22870 0.99317 0.82995 0.96407 1.21918 0.82158 0.96128 1.01345 0.88700 1.19442 0.77898 0.85295 0.85165 1.90686 1.57036 1.71006 1.22746 1.45766 1.54764 1.18438 1.17461 1.21341 0.97596 0.81958 0.97351 1.22623 0.96083 0.98241 0.97553 0.89580 1.23433 0.98777 0.94097 1.01848 1.21526 0.86174 0.90961 0.95983 0.90735 1.42430 1.08470 1.72979 1.11231 1.19353 0.89666 1.34101 0.94184 0.91074 1.24775 0.98378 1.01806 0.96110 1.69671 1.29897 1.48599 1.09873 0.86118 0.83715 0.77424 0.78941 1.20559 1.21878 1.21874 1.23940 0.93154 1.01238 1.01800 0.90044 0.88384 0.88489 0.89936 0.87708 0.87233 0.92189 0.86930 0.90883 0.77161 0.91605 0.91657 0.90159 0.92087 0.78065 0.93522 0.92870 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.09 36.00 0.36 -0.62 16 2 C 0.51 5.34 7.56 -10.99 -0.08 5.26 16 3 O -0.50 -7.76 13.47 -17.01 -0.23 -7.99 16 4 N -0.61 -5.28 3.02 -166.06 -0.50 -5.78 16 5 C 0.07 0.31 6.57 -3.54 -0.02 0.29 16 6 C 0.04 0.21 6.98 37.31 0.26 0.47 16 7 O -0.37 -3.09 10.74 -35.23 -0.38 -3.47 16 8 C 0.06 0.57 6.21 37.31 0.23 0.81 16 9 C 0.09 0.92 3.50 -68.58 -0.24 0.68 16 10 H 0.10 0.78 7.96 -51.93 -0.41 0.36 16 11 C 0.54 7.53 4.04 -10.99 -0.04 7.49 16 12 O -0.54 -9.74 15.39 -17.01 -0.26 -10.00 16 13 N -0.71 -9.44 5.40 -60.29 -0.33 -9.77 16 14 C 0.14 2.14 5.51 -4.04 -0.02 2.12 16 15 C -0.13 -1.86 3.75 -89.81 -0.34 -2.20 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.14 -2.43 7.39 -25.92 -0.19 -2.63 16 18 C 0.17 3.33 4.48 -67.11 -0.30 3.03 16 19 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 20 N -0.71 -18.26 5.40 -52.63 -0.28 -18.55 16 21 C -0.24 -6.81 9.97 -15.06 -0.15 -6.96 16 22 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 C -0.16 -2.77 7.43 -25.92 -0.19 -2.97 16 30 H 0.08 0.21 5.22 -51.92 -0.27 -0.06 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.11 0.19 5.15 -51.93 -0.27 -0.08 16 35 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 39 H 0.40 4.24 8.34 -40.82 -0.34 3.90 16 40 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.39 10.51 7.92 -40.82 -0.32 10.19 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -37.20 378.15 -8.86 -46.06 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.45 Total: 9.85 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.83 Total: 4.25 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.39 Total: -62.00 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.87 Total: -21.46 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.20 -8.86 -46.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086275928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.670 kcal (2) G-P(sol) polarization free energy of solvation -37.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds