Wall clock time and date at job start Fri Apr 10 2020 18:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 119.99594 * 2 1 4 4 N 1.34777 * 119.99966 * 179.97438 * 2 1 3 5 5 C 1.47152 * 120.98326 * 7.31793 * 4 2 1 6 6 C 1.53290 * 108.38482 * 230.55440 * 5 4 2 7 7 O 1.42961 * 109.22254 * 307.69950 * 6 5 4 8 8 C 1.42958 * 114.16877 * 62.58068 * 7 6 5 9 9 C 1.47153 * 120.97884 * 187.33882 * 4 2 1 10 10 H 1.09004 * 109.71010 * 249.17972 * 9 4 2 11 11 C 1.50697 * 109.68312 * 9.72015 * 9 4 2 12 12 O 1.21278 * 120.00014 * 69.51306 * 11 9 4 13 13 N 1.34775 * 119.99863 * 249.50683 * 11 9 4 14 14 C 1.46507 * 119.99778 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47090 * 179.97438 * 14 13 11 16 16 H 1.08998 * 112.84961 * 43.80049 * 15 14 13 17 17 C 1.53781 * 113.61312 * 174.99482 * 15 14 13 18 18 C 1.53787 * 87.07747 * 139.98326 * 17 15 14 19 19 H 1.08994 * 113.61779 * 89.12087 * 18 17 15 20 20 N 1.46501 * 113.61339 * 220.02399 * 18 17 15 21 21 C 1.36936 * 120.00149 * 205.00298 * 20 18 17 22 22 H 1.08003 * 119.99715 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00212 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00069 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99796 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47279 * 0.02562 * 25 23 21 27 27 H 1.48492 * 109.46962 * 120.00350 * 25 23 21 28 28 H 1.48500 * 109.46974 * 240.00102 * 25 23 21 29 29 C 1.53784 * 113.61360 * 272.49650 * 15 14 13 30 30 H 1.09010 * 109.47071 * 185.49855 * 1 2 3 31 31 H 1.08996 * 109.47631 * 305.50597 * 1 2 3 32 32 H 1.09004 * 109.47101 * 65.50639 * 1 2 3 33 33 H 1.08997 * 109.68088 * 110.83073 * 5 4 2 34 34 H 1.08995 * 109.70897 * 350.29453 * 5 4 2 35 35 H 1.08997 * 109.51407 * 187.77520 * 6 5 4 36 36 H 1.09002 * 109.51243 * 67.62258 * 6 5 4 37 37 H 1.09000 * 109.51663 * 177.49542 * 8 7 6 38 38 H 1.09003 * 109.51642 * 57.34664 * 8 7 6 39 39 H 0.96994 * 120.00143 * 0.02562 * 13 11 9 40 40 H 1.09000 * 109.47102 * 59.99839 * 14 13 11 41 41 H 1.08998 * 109.46569 * 299.99794 * 14 13 11 42 42 H 1.09001 * 113.61321 * 25.43888 * 17 15 14 43 43 H 1.08996 * 113.69029 * 254.53688 * 17 15 14 44 44 H 0.97007 * 120.00179 * 24.99189 * 20 18 17 45 45 H 0.96993 * 120.00008 * 179.97438 * 24 23 21 46 46 H 1.08998 * 113.61426 * 105.47202 * 29 15 14 47 47 H 1.08997 * 113.61261 * 334.56280 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4760 -2.4490 -0.1596 6 6 1.9253 -3.3913 0.9628 7 8 3.3535 -3.4505 0.9842 8 6 3.9869 -2.2009 1.2685 9 6 3.6432 -1.1975 0.1617 10 1 4.1098 -1.5081 -0.7732 11 6 4.1399 0.1724 0.5462 12 8 3.8856 0.6239 1.6427 13 7 4.8668 0.8956 -0.3284 14 6 5.3502 2.2271 0.0457 15 6 6.1426 2.8273 -1.1174 16 1 5.6575 2.6776 -2.0819 17 6 6.5926 4.2773 -0.8728 18 6 7.9239 3.8936 -1.5403 19 1 7.9271 4.0351 -2.6210 20 7 9.0980 4.4757 -0.8854 21 6 10.2522 4.6704 -1.5961 22 1 10.2970 4.3944 -2.6393 23 6 11.3645 5.2225 -0.9757 24 7 11.3097 5.5593 0.2954 25 14 12.9392 5.4873 -1.9451 26 1 12.7422 5.0298 -3.3441 27 1 13.2859 6.9312 -1.9413 28 1 14.0412 4.7121 -1.3207 29 6 7.6325 2.4465 -1.1092 30 1 -0.3634 -1.0230 0.0985 31 1 -0.3634 0.5968 0.8365 32 1 -0.3633 0.4261 -0.9352 33 1 1.7237 -2.8858 -1.1270 34 1 0.4000 -2.2874 -0.0946 35 1 1.5222 -4.3882 0.7844 36 1 1.5621 -3.0168 1.9199 37 1 5.0671 -2.3412 1.3100 38 1 3.6313 -1.8220 2.2267 39 1 5.0699 0.5346 -1.2054 40 1 5.9948 2.1470 0.9210 41 1 4.5010 2.8700 0.2774 42 1 6.6908 4.5319 0.1826 43 1 6.0191 5.0146 -1.4345 44 1 9.0577 4.7235 0.0516 45 1 12.0870 5.9447 0.7289 46 1 7.8976 1.7047 -1.8626 47 1 8.0148 2.2006 -0.1186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086275928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:37 Heat of formation + Delta-G solvation = -93.022841 kcal Electronic energy + Delta-G solvation = -28141.421332 eV Core-core repulsion = 24131.848487 eV Total energy + Delta-G solvation = -4009.572845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10988 -40.37459 -39.44285 -39.36860 -36.03780 -35.95910 -34.98811 -33.23513 -32.13995 -30.78715 -29.07703 -28.38304 -26.48411 -26.10908 -25.32520 -23.32815 -22.56553 -22.05415 -20.69600 -20.13276 -19.09417 -18.65205 -18.03321 -17.79028 -17.26967 -16.78789 -16.59594 -16.43191 -16.33672 -15.99474 -15.78811 -15.68017 -15.30183 -14.99455 -14.80373 -14.66425 -14.36413 -14.14723 -13.42813 -13.27020 -13.25392 -13.10684 -13.03455 -12.93826 -12.91748 -12.66756 -12.48218 -12.17163 -12.06776 -12.01259 -11.62491 -11.57091 -11.39205 -11.11178 -10.89640 -10.83265 -10.68531 -10.01180 -9.74084 -8.99075 -7.94919 -5.23727 1.27198 1.46870 1.48009 1.54151 1.58122 2.07672 2.11351 2.56304 2.79831 3.36513 3.42451 3.57250 3.71287 3.73668 3.79235 3.82914 3.92010 3.93534 4.05061 4.19908 4.22117 4.32815 4.32953 4.40947 4.52707 4.54155 4.58416 4.60849 4.74547 4.78994 4.89273 4.94361 4.95789 5.01186 5.06455 5.17512 5.20198 5.35223 5.46063 5.53699 5.71252 5.96671 6.20010 6.27192 6.56435 7.00155 7.31650 7.32399 8.09854 8.32549 9.28984 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.002213 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.527275 B =12651.592159 C =13216.092491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.494 3.506 3 O -0.563 6.563 4 N -0.610 5.610 5 C 0.068 3.932 6 C 0.034 3.966 7 O -0.382 6.382 8 C 0.069 3.931 9 C 0.094 3.906 10 H 0.119 0.881 11 C 0.533 3.467 12 O -0.586 6.586 13 N -0.707 5.707 14 C 0.152 3.848 15 C -0.095 4.095 16 H 0.115 0.885 17 C -0.138 4.138 18 C 0.146 3.854 19 H 0.083 0.917 20 N -0.730 5.730 21 C -0.241 4.241 22 H 0.080 0.920 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.975 3.025 26 H -0.263 1.263 27 H -0.295 1.295 28 H -0.295 1.295 29 C -0.149 4.149 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.410 0.590 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.071 0.929 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.675 -22.992 -4.424 36.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.286 3.714 3 O -0.442 6.442 4 N -0.347 5.347 5 C -0.052 4.052 6 C -0.043 4.043 7 O -0.300 6.300 8 C -0.009 4.009 9 C -0.013 4.013 10 H 0.137 0.863 11 C 0.321 3.679 12 O -0.467 6.467 13 N -0.359 5.359 14 C 0.027 3.973 15 C -0.114 4.114 16 H 0.133 0.867 17 C -0.178 4.178 18 C 0.037 3.963 19 H 0.101 0.899 20 N -0.367 5.367 21 C -0.372 4.372 22 H 0.098 0.902 23 C -0.274 4.274 24 N -0.624 5.624 25 Si 0.804 3.196 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.222 1.222 29 C -0.190 4.190 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.068 0.932 39 H 0.246 0.754 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.322 -22.260 -3.858 35.453 hybrid contribution 1.205 0.851 0.124 1.481 sum -26.117 -21.409 -3.734 33.976 Atomic orbital electron populations 1.22013 0.87356 1.06799 1.06099 1.21896 0.92823 0.82441 0.74274 1.90747 1.69989 1.32534 1.50903 1.48384 1.05068 1.08097 1.73148 1.22982 0.99848 0.81420 1.00991 1.23360 0.80297 1.02625 0.97985 1.88002 1.20655 1.29448 1.91891 1.22709 0.99792 0.83342 0.95062 1.21881 0.83591 0.93340 1.02504 0.86319 1.20125 0.76901 0.86573 0.84329 1.90652 1.58654 1.72527 1.24859 1.45654 1.54462 1.17583 1.18160 1.21019 0.96436 0.83013 0.96792 1.22441 0.94552 0.95880 0.98552 0.86652 1.23335 0.97389 0.96185 1.00862 1.21924 0.85481 0.92586 0.96316 0.89948 1.42650 1.09605 1.73746 1.10729 1.19781 0.90445 1.32418 0.94602 0.90179 1.25634 1.01853 1.02712 0.97152 1.69839 1.30534 1.50404 1.11645 0.85042 0.79439 0.76798 0.78311 1.18684 1.22196 1.22194 1.23702 0.94649 0.99613 1.01002 0.86465 0.88907 0.87246 0.88152 0.84553 0.84030 0.92676 0.86462 0.93155 0.75439 0.93779 0.93473 0.91701 0.90595 0.79703 0.94105 0.91036 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 10.09 71.23 0.72 -0.74 16 2 C 0.49 9.81 7.56 87.66 0.66 10.47 16 3 O -0.56 -17.51 13.47 18.56 0.25 -17.26 16 4 N -0.61 -9.31 3.02 -797.69 -2.41 -11.72 16 5 C 0.07 0.35 6.57 86.35 0.57 0.92 16 6 C 0.03 0.24 6.98 72.08 0.50 0.74 16 7 O -0.38 -5.55 10.74 -148.98 -1.60 -7.15 16 8 C 0.07 1.24 6.21 72.08 0.45 1.69 16 9 C 0.09 1.77 3.50 44.22 0.15 1.93 16 10 H 0.12 1.65 7.96 -2.38 -0.02 1.63 16 11 C 0.53 15.14 4.04 87.66 0.35 15.49 16 12 O -0.59 -22.29 15.39 18.56 0.29 -22.01 16 13 N -0.71 -18.47 5.40 -463.06 -2.50 -20.97 16 14 C 0.15 4.68 5.51 86.38 0.48 5.16 16 15 C -0.10 -2.70 3.75 -10.27 -0.04 -2.74 16 16 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 17 C -0.14 -4.71 7.39 31.12 0.23 -4.48 16 18 C 0.15 5.82 4.48 45.52 0.20 6.02 16 19 H 0.08 3.15 8.10 -2.39 -0.02 3.13 16 20 N -0.73 -37.98 5.40 -320.43 -1.73 -39.71 16 21 C -0.24 -13.58 9.97 84.03 0.84 -12.74 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 24 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 25 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 26 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 29 C -0.15 -5.04 7.43 31.12 0.23 -4.81 16 30 H 0.12 0.10 5.22 -2.38 -0.01 0.09 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.14 -0.19 5.15 -2.39 -0.01 -0.21 16 35 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.12 7.74 -2.39 -0.02 1.10 16 39 H 0.41 8.08 8.34 -92.71 -0.77 7.30 16 40 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 43 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.37 21.04 7.92 -92.70 -0.73 20.31 16 45 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.19 7.89 -2.39 -0.02 2.17 16 Total: -1.00 -84.99 378.15 -0.09 -85.08 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.51 Total: 33.34 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 5.82 Total: 12.58 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -6.36 Total: -133.50 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.06 Total: -46.42 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -84.99 -0.09 -85.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086275928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.942 kcal (2) G-P(sol) polarization free energy of solvation -84.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds