Wall clock time and date at job start Fri Apr 10 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21272 * 120.00428 * 2 1 4 4 N 1.34780 * 119.99495 * 179.97438 * 2 1 3 5 5 C 1.47148 * 120.98274 * 0.02562 * 4 2 1 6 6 C 1.53296 * 108.38391 * 230.50991 * 5 4 2 7 7 O 1.42965 * 109.22220 * 307.69831 * 6 5 4 8 8 C 1.42962 * 114.16745 * 62.58386 * 7 6 5 9 9 H 1.09000 * 109.51132 * 57.33867 * 8 7 6 10 10 C 1.50699 * 109.51209 * 177.49603 * 8 7 6 11 11 O 1.21279 * 120.00058 * 4.99349 * 10 8 7 12 12 N 1.34775 * 119.99751 * 184.99792 * 10 8 7 13 13 C 1.46497 * 120.00244 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47549 * 179.97438 * 13 12 10 15 15 H 1.08998 * 112.85176 * 314.67161 * 14 13 12 16 16 C 1.53785 * 113.61333 * 85.86096 * 14 13 12 17 17 C 1.53955 * 87.01905 * 139.95296 * 16 14 13 18 18 H 1.09000 * 113.67099 * 220.06913 * 17 16 14 19 19 N 1.46503 * 113.61198 * 89.19684 * 17 16 14 20 20 C 1.36944 * 119.99633 * 107.46742 * 19 17 16 21 21 H 1.08000 * 119.99822 * 0.02562 * 20 19 17 22 22 C 1.38803 * 119.99926 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00082 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00089 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47077 * 90.00092 * 24 22 20 26 26 H 1.48502 * 109.47000 * 209.99934 * 24 22 20 27 27 H 1.48494 * 109.47058 * 330.00183 * 24 22 20 28 28 C 1.53780 * 113.61551 * 183.46973 * 14 13 12 29 29 C 1.47158 * 120.97848 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47724 * 240.00336 * 1 2 3 31 31 H 1.09009 * 109.47066 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.47401 * 120.00042 * 1 2 3 33 33 H 1.09007 * 109.68058 * 110.79263 * 5 4 2 34 34 H 1.08991 * 109.71471 * 350.25350 * 5 4 2 35 35 H 1.09001 * 109.51592 * 187.77795 * 6 5 4 36 36 H 1.09000 * 109.51290 * 67.62109 * 6 5 4 37 37 H 0.97008 * 120.00311 * 0.02562 * 12 10 8 38 38 H 1.09003 * 109.46963 * 300.00110 * 13 12 10 39 39 H 1.08995 * 109.47271 * 59.99842 * 13 12 10 40 40 H 1.08996 * 113.61705 * 254.53034 * 16 14 13 41 41 H 1.09004 * 113.61265 * 25.43848 * 16 14 13 42 42 H 0.96996 * 120.00289 * 287.46654 * 19 17 16 43 43 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 44 44 H 1.08994 * 113.61537 * 334.56693 * 28 14 13 45 45 H 1.09000 * 113.61578 * 105.47518 * 28 14 13 46 46 H 1.08995 * 109.68247 * 249.21153 * 29 4 2 47 47 H 1.09001 * 109.68235 * 9.72854 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1807 -1.1673 0.0005 5 6 1.4669 -2.4540 0.0005 6 6 2.0408 -3.3253 1.1236 7 8 3.4629 -3.3882 0.9905 8 6 4.1196 -2.1254 1.1236 9 1 3.8707 -1.6856 2.0894 10 6 5.6108 -2.3209 1.0276 11 8 6.0635 -3.4164 0.7714 12 7 6.4413 -1.2782 1.2265 13 6 7.8909 -1.4683 1.1337 14 6 8.5978 -0.1377 1.3993 15 1 8.1430 0.6972 0.8662 16 6 8.8409 0.1436 2.8915 17 6 10.2173 0.6975 2.4804 18 1 11.0211 0.4238 3.1639 19 7 10.2031 2.1275 2.1624 20 6 10.7708 3.0265 3.0255 21 1 11.2292 2.6812 3.9404 22 6 10.7569 4.3814 2.7245 23 7 10.1987 4.8022 1.6093 24 14 11.5319 5.6077 3.9015 25 1 12.9617 5.7974 3.5482 26 1 10.8206 6.9074 3.8013 27 1 11.4293 5.0931 5.2907 28 6 10.1259 -0.2098 1.2421 29 6 3.6521 -1.1925 0.0000 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6077 -2.9520 -0.9588 34 1 0.4042 -2.2849 0.1738 35 1 1.6239 -4.3301 1.0542 36 1 1.7845 -2.8899 2.0894 37 1 6.0792 -0.4020 1.4318 38 1 8.2090 -2.2031 1.8732 39 1 8.1477 -1.8227 0.1355 40 1 8.1728 0.8971 3.3084 41 1 8.8977 -0.7576 3.5021 42 1 9.7918 2.4376 1.3405 43 1 10.1887 5.7491 1.3991 44 1 10.5345 -1.2077 1.4009 45 1 10.4936 0.2589 0.3293 46 1 4.0125 -1.5637 -0.9594 47 1 4.0366 -0.1873 0.1726 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086544791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:48 Heat of formation + Delta-G solvation = -75.528505 kcal Electronic energy + Delta-G solvation = -27684.369338 eV Core-core repulsion = 23675.555104 eV Total energy + Delta-G solvation = -4008.814234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99947 -39.74751 -38.74862 -38.10203 -35.28259 -34.67393 -33.29667 -32.47347 -30.39359 -30.16182 -28.56473 -26.96271 -25.08175 -24.99024 -23.74881 -23.03804 -21.69035 -20.62567 -19.78694 -18.48387 -17.86886 -17.40728 -17.26314 -17.00083 -16.57023 -16.03621 -15.67161 -15.57757 -15.11394 -14.85576 -14.71760 -14.16072 -14.04812 -14.00748 -13.80569 -13.38043 -13.18662 -12.98226 -12.88409 -12.63908 -12.46788 -12.28702 -12.05889 -11.92713 -11.40464 -11.38616 -11.04233 -10.85101 -10.71453 -10.49457 -10.31256 -10.17164 -10.09429 -9.78772 -9.69316 -9.48564 -9.11249 -9.04415 -8.88511 -7.00170 -5.80462 -3.09755 2.14898 2.25575 2.54434 2.57990 3.42192 3.47450 3.49173 3.63789 4.05555 4.14103 4.32827 4.44999 4.48813 4.55848 4.64762 4.67941 4.73607 4.88077 5.01667 5.04081 5.06423 5.07650 5.19129 5.22400 5.34999 5.41036 5.45262 5.60896 5.68510 5.79835 5.85195 5.93572 6.09404 6.20415 6.32009 6.36892 6.52523 6.58575 6.74065 6.83160 6.88759 7.03784 7.38986 7.68794 7.69040 8.07539 8.38611 9.49257 10.06713 10.40790 11.41901 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.002494 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.071027 B =11222.217453 C =12789.096593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.534 6.534 4 N -0.619 5.619 5 C 0.070 3.930 6 C 0.045 3.955 7 O -0.349 6.349 8 C 0.062 3.938 9 H 0.090 0.910 10 C 0.521 3.479 11 O -0.520 6.520 12 N -0.719 5.719 13 C 0.132 3.868 14 C -0.121 4.121 15 H 0.094 0.906 16 C -0.169 4.169 17 C 0.168 3.832 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.147 4.147 29 C 0.088 3.912 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.749 -17.193 -3.093 27.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.410 6.410 4 N -0.355 5.355 5 C -0.053 4.053 6 C -0.032 4.032 7 O -0.266 6.266 8 C -0.001 4.001 9 H 0.108 0.892 10 C 0.304 3.696 11 O -0.395 6.395 12 N -0.372 5.372 13 C 0.010 3.990 14 C -0.139 4.139 15 H 0.112 0.888 16 C -0.210 4.210 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.187 4.187 29 C -0.035 4.035 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.239 0.761 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.894 -17.450 -3.185 27.408 hybrid contribution -0.269 1.366 0.446 1.462 sum -21.163 -16.084 -2.739 26.722 Atomic orbital electron populations 1.21947 0.91253 1.05870 1.04150 1.20918 0.90808 0.82712 0.75383 1.90780 1.70614 1.30719 1.48908 1.48186 1.06402 1.06313 1.74649 1.22535 0.97596 0.84227 1.00925 1.23085 0.81361 1.01475 0.97319 1.88122 1.18300 1.26985 1.93195 1.22311 0.91703 0.86309 0.99731 0.89242 1.19820 0.87115 0.84940 0.77739 1.90731 1.77497 1.24635 1.46597 1.46005 1.07528 1.11873 1.71745 1.21527 0.77592 0.98187 1.01716 1.22728 0.96393 0.95640 0.99163 0.88769 1.23926 1.02630 1.00480 0.94006 1.21084 0.94211 0.85211 0.93964 0.91955 1.42176 1.68230 0.99277 1.24742 1.19282 1.29700 0.87535 1.00885 0.91001 1.24767 1.01363 0.97060 0.97675 1.69659 1.49363 1.14478 1.24482 0.86173 0.78731 0.80961 0.80215 1.21654 1.21753 1.20713 1.23440 0.93755 1.00408 1.01089 1.22176 0.80420 1.01793 0.99125 0.89257 0.88630 0.89231 0.89948 0.88235 0.86816 0.92232 0.76137 0.91355 0.91584 0.91472 0.91391 0.78090 0.93409 0.90428 0.91264 0.89838 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 8.69 36.00 0.31 -0.50 16 2 C 0.51 4.81 7.82 -10.99 -0.09 4.72 16 3 O -0.53 -7.64 16.55 5.56 0.09 -7.54 16 4 N -0.62 -5.04 3.02 -172.25 -0.52 -5.56 16 5 C 0.07 0.34 6.54 -3.54 -0.02 0.31 16 6 C 0.05 0.26 6.99 37.31 0.26 0.52 16 7 O -0.35 -3.71 9.92 -55.06 -0.55 -4.26 16 8 C 0.06 0.64 3.19 -27.71 -0.09 0.55 16 9 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 10 C 0.52 6.81 7.18 -10.99 -0.08 6.73 16 11 O -0.52 -8.85 16.51 -14.27 -0.24 -9.09 16 12 N -0.72 -8.63 5.52 -60.30 -0.33 -8.96 16 13 C 0.13 1.74 5.50 -4.04 -0.02 1.72 16 14 C -0.12 -1.78 3.63 -89.81 -0.33 -2.10 16 15 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 16 C -0.17 -2.79 7.44 -25.82 -0.19 -2.98 16 17 C 0.17 3.25 4.57 -67.02 -0.31 2.94 16 18 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 19 N -0.71 -17.37 5.31 -52.54 -0.28 -17.65 16 20 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 24 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C -0.15 -2.33 7.39 -25.92 -0.19 -2.53 16 29 C 0.09 0.86 5.89 -3.51 -0.02 0.84 16 30 H 0.09 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.09 0.50 8.12 -51.92 -0.42 0.08 16 32 H 0.09 0.24 8.02 -51.93 -0.42 -0.17 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.17 6.06 -51.93 -0.31 -0.14 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.40 4.28 8.47 -40.82 -0.35 3.94 16 38 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 42 H 0.39 10.04 7.90 -40.82 -0.32 9.71 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.11 1.17 7.08 -51.93 -0.37 0.80 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -36.22 385.77 -8.91 -45.14 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.60 Total: 9.14 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.01 Total: 2.94 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.41 Total: -59.41 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.69 Total: -20.89 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.22 -8.91 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086544791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.392 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds