Wall clock time and date at job start Fri Apr 10 2020 18:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21286 * 119.99820 * 2 1 4 4 N 1.34769 * 120.00229 * 179.97438 * 2 1 3 5 5 C 1.47151 * 120.98342 * 174.62482 * 4 2 1 6 6 C 1.53295 * 108.38355 * 129.44581 * 5 4 2 7 7 O 1.42967 * 109.22325 * 52.30452 * 6 5 4 8 8 C 1.42956 * 114.16527 * 297.42278 * 7 6 5 9 9 H 1.08999 * 109.51644 * 302.60291 * 8 7 6 10 10 C 1.50703 * 109.51341 * 182.50042 * 8 7 6 11 11 O 1.21279 * 119.99779 * 355.00249 * 10 8 7 12 12 N 1.34773 * 120.00166 * 174.99897 * 10 8 7 13 13 C 1.46506 * 120.00217 * 180.02562 * 12 10 8 14 14 C 1.52991 * 109.47348 * 180.02562 * 13 12 10 15 15 C 1.53787 * 113.61458 * 184.99987 * 14 13 12 16 16 C 1.53780 * 87.08006 * 219.93332 * 15 14 13 17 17 N 1.46500 * 113.61338 * 139.98021 * 16 15 14 18 18 C 1.36939 * 120.00053 * 156.53012 * 17 16 15 19 19 H 1.07998 * 119.99879 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00182 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99542 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00007 * 180.27504 * 20 18 17 23 23 H 1.48496 * 109.46754 * 269.72176 * 22 20 18 24 24 H 1.48504 * 109.47025 * 29.72130 * 22 20 18 25 25 H 1.48496 * 109.46991 * 149.71944 * 22 20 18 26 26 C 1.53782 * 87.17384 * 25.38824 * 16 15 14 27 27 C 1.47151 * 120.98273 * 354.61239 * 4 2 1 28 28 H 1.08998 * 109.46941 * 274.73045 * 1 2 3 29 29 H 1.09002 * 109.46913 * 34.73405 * 1 2 3 30 30 H 1.09000 * 109.46578 * 154.73114 * 1 2 3 31 31 H 1.08998 * 109.68250 * 9.72996 * 5 4 2 32 32 H 1.08992 * 109.71957 * 249.18759 * 5 4 2 33 33 H 1.08999 * 109.51696 * 292.38600 * 6 5 4 34 34 H 1.09000 * 109.55602 * 172.25090 * 6 5 4 35 35 H 0.97000 * 120.00038 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.46824 * 59.99719 * 13 12 10 37 37 H 1.09005 * 109.46567 * 300.00223 * 13 12 10 38 38 H 1.09005 * 112.85036 * 316.19096 * 14 13 12 39 39 H 1.09004 * 113.61222 * 105.38457 * 15 14 13 40 40 H 1.08999 * 113.68763 * 334.49331 * 15 14 13 41 41 H 1.09000 * 113.61586 * 270.80124 * 16 15 14 42 42 H 0.96998 * 119.99745 * 336.52564 * 17 16 15 43 43 H 0.97001 * 119.99429 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61457 * 89.15637 * 26 16 15 45 45 H 1.09001 * 113.61448 * 220.05956 * 26 16 15 46 46 H 1.09002 * 109.68410 * 110.83177 * 27 4 2 47 47 H 1.09003 * 109.68029 * 350.27231 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6474 -1.1951 -0.1176 6 6 4.2064 -2.0743 1.0069 7 8 3.5436 -3.3409 0.9878 8 6 2.1369 -3.2691 1.2325 9 1 1.9588 -2.7885 2.1945 10 6 1.5573 -4.6601 1.2497 11 8 2.2584 -5.6125 0.9808 12 7 0.2600 -4.8457 1.5640 13 6 -0.3034 -6.1980 1.5812 14 6 -1.7827 -6.1294 1.9652 15 6 -2.4407 -7.5094 2.1313 16 6 -3.6772 -6.9163 1.4356 17 7 -4.3168 -7.8358 0.4912 18 6 -5.6372 -7.6745 0.1662 19 1 -6.2073 -6.8697 0.6064 20 6 -6.2434 -8.5460 -0.7281 21 7 -5.5487 -9.5271 -1.2642 22 14 -8.0426 -8.3213 -1.1773 23 1 -8.8883 -9.1007 -0.2379 24 1 -8.3993 -6.8826 -1.0874 25 1 -8.2704 -8.8020 -2.5638 26 6 -2.7246 -5.9109 0.7672 27 6 1.4720 -2.4511 0.1195 28 1 -0.3633 0.0847 1.0242 29 1 -0.3633 0.8446 -0.5855 30 1 -0.3632 -0.9294 -0.4387 31 1 4.0427 -0.1837 -0.0237 32 1 3.9306 -1.6116 -1.0842 33 1 4.0357 -1.5887 1.9677 34 1 5.2761 -2.2209 0.8579 35 1 -0.3008 -4.0840 1.7788 36 1 0.2336 -6.8060 2.3093 37 1 -0.2055 -6.6450 0.5919 38 1 -1.9730 -5.4520 2.7978 39 1 -2.6158 -7.7874 3.1706 40 1 -1.9538 -8.2985 1.5583 41 1 -4.3861 -6.4552 2.1233 42 1 -3.8049 -8.5587 0.0961 43 1 -5.9722 -10.1359 -1.8894 44 1 -2.3147 -6.2612 -0.1800 45 1 -3.1287 -4.9003 0.7069 46 1 1.5356 -2.9944 -0.8233 47 1 0.4266 -2.2713 0.3706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091349422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:57 Heat of formation + Delta-G solvation = -75.277893 kcal Electronic energy + Delta-G solvation = -27606.396350 eV Core-core repulsion = 23597.592984 eV Total energy + Delta-G solvation = -4008.803366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07844 -39.85316 -38.78701 -38.12206 -35.40020 -34.76043 -33.40754 -32.51250 -30.70793 -30.17553 -28.33655 -27.16337 -25.22971 -25.13082 -23.88833 -22.98070 -21.16375 -20.79213 -19.82390 -19.14286 -17.99964 -17.39485 -17.22867 -17.04857 -16.62011 -16.12521 -15.81351 -15.62326 -15.18716 -14.98045 -14.65482 -14.57327 -14.11300 -14.04730 -13.71230 -13.52427 -13.23139 -13.06940 -12.92439 -12.56391 -12.44442 -12.14534 -11.98328 -11.88947 -11.46056 -11.42242 -11.28902 -10.88498 -10.75374 -10.58054 -10.37120 -10.28404 -10.18978 -9.93257 -9.88405 -9.55414 -9.21402 -9.12443 -8.91595 -7.01080 -5.82507 -3.11655 2.06433 2.19834 2.45446 2.47542 3.39441 3.44584 3.46555 3.53273 3.98932 4.04127 4.29643 4.36343 4.51577 4.54114 4.57553 4.64863 4.77028 4.87374 4.89496 4.92517 4.94519 5.10812 5.14472 5.15451 5.34477 5.40789 5.41169 5.42157 5.73584 5.75143 5.78703 5.85540 6.03633 6.11914 6.23103 6.27908 6.33519 6.48427 6.52034 6.75057 6.76281 7.04676 7.24582 7.61049 7.64693 7.96410 8.36045 9.47146 10.05117 10.39016 11.39811 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.002281 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.554815 B =12270.221907 C =13406.778264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.518 3.482 3 O -0.543 6.543 4 N -0.618 5.618 5 C 0.073 3.927 6 C 0.048 3.952 7 O -0.348 6.348 8 C 0.062 3.938 9 H 0.089 0.911 10 C 0.518 3.482 11 O -0.512 6.512 12 N -0.721 5.721 13 C 0.133 3.867 14 C -0.127 4.127 15 C -0.142 4.142 16 C 0.166 3.834 17 N -0.713 5.713 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.282 1.282 25 H -0.291 1.291 26 C -0.161 4.161 27 C 0.082 3.918 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.397 17.732 6.906 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.307 3.693 3 O -0.420 6.420 4 N -0.354 5.354 5 C -0.050 4.050 6 C -0.030 4.030 7 O -0.266 6.266 8 C -0.001 4.001 9 H 0.107 0.893 10 C 0.301 3.699 11 O -0.386 6.386 12 N -0.374 5.374 13 C 0.010 3.990 14 C -0.147 4.147 15 C -0.182 4.182 16 C 0.053 3.947 17 N -0.351 5.351 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.217 1.217 26 C -0.202 4.202 27 C -0.041 4.041 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.116 17.437 6.612 25.313 hybrid contribution -1.187 0.400 -0.292 1.286 sum 15.930 17.837 6.320 24.736 Atomic orbital electron populations 1.22009 0.91103 1.05390 1.05342 1.20923 0.90846 0.82596 0.74895 1.90725 1.70739 1.30786 1.49772 1.48196 1.07421 1.05959 1.73798 1.22365 0.79840 1.02747 1.00017 1.23093 0.97982 0.84148 0.97760 1.88137 1.17466 1.28517 1.92434 1.22279 0.84354 0.94401 0.99058 0.89291 1.19856 0.82380 0.89721 0.77934 1.90766 1.59235 1.42229 1.46354 1.45968 1.09891 1.10768 1.70777 1.21501 0.93190 0.82013 1.02274 1.22681 0.91888 1.00035 1.00072 1.23433 0.98493 0.95270 1.00967 1.21511 0.90765 0.90933 0.91448 1.42414 1.09567 1.33366 1.49755 1.19284 0.86974 1.10580 1.20776 0.91116 1.24775 0.98238 0.97883 0.99994 1.69661 1.35610 1.18696 1.33981 0.86196 0.85007 0.77457 0.77549 1.21676 1.20740 1.21747 1.23991 0.98317 1.00923 0.96986 1.22405 0.97236 0.84338 1.00154 0.88384 0.88371 0.89636 0.87716 0.90179 0.92307 0.86795 0.76642 0.91485 0.90893 0.89319 0.91943 0.90028 0.90765 0.78051 0.93409 0.90276 0.92742 0.89278 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 9.47 36.01 0.34 -0.57 16 2 C 0.52 4.48 7.81 -10.99 -0.09 4.40 16 3 O -0.54 -6.83 16.57 5.55 0.09 -6.74 16 4 N -0.62 -4.69 3.02 -172.28 -0.52 -5.21 16 5 C 0.07 0.53 6.65 -3.53 -0.02 0.50 16 6 C 0.05 0.33 6.98 37.31 0.26 0.59 16 7 O -0.35 -3.57 9.92 -55.06 -0.55 -4.12 16 8 C 0.06 0.51 3.19 -27.73 -0.09 0.42 16 9 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 10 C 0.52 5.70 7.18 -10.99 -0.08 5.62 16 11 O -0.51 -8.20 16.51 -14.27 -0.24 -8.43 16 12 N -0.72 -6.42 5.52 -60.29 -0.33 -6.75 16 13 C 0.13 1.50 5.52 -4.04 -0.02 1.48 16 14 C -0.13 -1.46 3.75 -89.72 -0.34 -1.80 16 15 C -0.14 -2.07 7.39 -25.92 -0.19 -2.26 16 16 C 0.17 2.98 4.47 -67.12 -0.30 2.68 16 17 N -0.71 -17.07 5.41 -52.64 -0.28 -17.35 16 18 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C -0.16 -2.36 7.45 -25.83 -0.19 -2.55 16 27 C 0.08 0.54 5.56 -3.53 -0.02 0.52 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.31 6.28 -51.93 -0.33 -0.02 16 31 H 0.10 0.79 7.06 -51.93 -0.37 0.43 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 2.30 8.47 -40.82 -0.35 1.95 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.96 7.86 -51.93 -0.41 0.56 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 41 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 42 H 0.39 9.89 7.91 -40.82 -0.32 9.57 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.08 1.31 7.91 -51.93 -0.41 0.89 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.11 0.40 5.80 -51.93 -0.30 0.10 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -35.81 384.92 -8.83 -44.64 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.52 Total: 6.43 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.98 Total: 1.85 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.41 Total: -56.21 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.69 Total: -19.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.81 -8.83 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091349422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.639 kcal (2) G-P(sol) polarization free energy of solvation -35.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds