Wall clock time and date at job start Fri Apr 10 2020 18:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21286 * 119.99820 * 2 1 4 4 N 1.34769 * 120.00229 * 179.97438 * 2 1 3 5 5 C 1.47151 * 120.98342 * 174.62482 * 4 2 1 6 6 C 1.53295 * 108.38355 * 129.44581 * 5 4 2 7 7 O 1.42967 * 109.22325 * 52.30452 * 6 5 4 8 8 C 1.42956 * 114.16527 * 297.42278 * 7 6 5 9 9 H 1.08999 * 109.51644 * 302.60291 * 8 7 6 10 10 C 1.50703 * 109.51341 * 182.50042 * 8 7 6 11 11 O 1.21279 * 119.99779 * 355.00249 * 10 8 7 12 12 N 1.34773 * 120.00166 * 174.99897 * 10 8 7 13 13 C 1.46506 * 120.00217 * 180.02562 * 12 10 8 14 14 C 1.52991 * 109.47348 * 180.02562 * 13 12 10 15 15 C 1.53787 * 113.61458 * 184.99987 * 14 13 12 16 16 C 1.53780 * 87.08006 * 219.93332 * 15 14 13 17 17 N 1.46500 * 113.61338 * 139.98021 * 16 15 14 18 18 C 1.36939 * 120.00053 * 156.53012 * 17 16 15 19 19 H 1.07998 * 119.99879 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00182 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99542 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00007 * 180.27504 * 20 18 17 23 23 H 1.48496 * 109.46754 * 269.72176 * 22 20 18 24 24 H 1.48504 * 109.47025 * 29.72130 * 22 20 18 25 25 H 1.48496 * 109.46991 * 149.71944 * 22 20 18 26 26 C 1.53782 * 87.17384 * 25.38824 * 16 15 14 27 27 C 1.47151 * 120.98273 * 354.61239 * 4 2 1 28 28 H 1.08998 * 109.46941 * 274.73045 * 1 2 3 29 29 H 1.09002 * 109.46913 * 34.73405 * 1 2 3 30 30 H 1.09000 * 109.46578 * 154.73114 * 1 2 3 31 31 H 1.08998 * 109.68250 * 9.72996 * 5 4 2 32 32 H 1.08992 * 109.71957 * 249.18759 * 5 4 2 33 33 H 1.08999 * 109.51696 * 292.38600 * 6 5 4 34 34 H 1.09000 * 109.55602 * 172.25090 * 6 5 4 35 35 H 0.97000 * 120.00038 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.46824 * 59.99719 * 13 12 10 37 37 H 1.09005 * 109.46567 * 300.00223 * 13 12 10 38 38 H 1.09005 * 112.85036 * 316.19096 * 14 13 12 39 39 H 1.09004 * 113.61222 * 105.38457 * 15 14 13 40 40 H 1.08999 * 113.68763 * 334.49331 * 15 14 13 41 41 H 1.09000 * 113.61586 * 270.80124 * 16 15 14 42 42 H 0.96998 * 119.99745 * 336.52564 * 17 16 15 43 43 H 0.97001 * 119.99429 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61457 * 89.15637 * 26 16 15 45 45 H 1.09001 * 113.61448 * 220.05956 * 26 16 15 46 46 H 1.09002 * 109.68410 * 110.83177 * 27 4 2 47 47 H 1.09003 * 109.68029 * 350.27231 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6474 -1.1951 -0.1176 6 6 4.2064 -2.0743 1.0069 7 8 3.5436 -3.3409 0.9878 8 6 2.1369 -3.2691 1.2325 9 1 1.9588 -2.7885 2.1945 10 6 1.5573 -4.6601 1.2497 11 8 2.2584 -5.6125 0.9808 12 7 0.2600 -4.8457 1.5640 13 6 -0.3034 -6.1980 1.5812 14 6 -1.7827 -6.1294 1.9652 15 6 -2.4407 -7.5094 2.1313 16 6 -3.6772 -6.9163 1.4356 17 7 -4.3168 -7.8358 0.4912 18 6 -5.6372 -7.6745 0.1662 19 1 -6.2073 -6.8697 0.6064 20 6 -6.2434 -8.5460 -0.7281 21 7 -5.5487 -9.5271 -1.2642 22 14 -8.0426 -8.3213 -1.1773 23 1 -8.8883 -9.1007 -0.2379 24 1 -8.3993 -6.8826 -1.0874 25 1 -8.2704 -8.8020 -2.5638 26 6 -2.7246 -5.9109 0.7672 27 6 1.4720 -2.4511 0.1195 28 1 -0.3633 0.0847 1.0242 29 1 -0.3633 0.8446 -0.5855 30 1 -0.3632 -0.9294 -0.4387 31 1 4.0427 -0.1837 -0.0237 32 1 3.9306 -1.6116 -1.0842 33 1 4.0357 -1.5887 1.9677 34 1 5.2761 -2.2209 0.8579 35 1 -0.3008 -4.0840 1.7788 36 1 0.2336 -6.8060 2.3093 37 1 -0.2055 -6.6450 0.5919 38 1 -1.9730 -5.4520 2.7978 39 1 -2.6158 -7.7874 3.1706 40 1 -1.9538 -8.2985 1.5583 41 1 -4.3861 -6.4552 2.1233 42 1 -3.8049 -8.5587 0.0961 43 1 -5.9722 -10.1359 -1.8894 44 1 -2.3147 -6.2612 -0.1800 45 1 -3.1287 -4.9003 0.7069 46 1 1.5356 -2.9944 -0.8233 47 1 0.4266 -2.2713 0.3706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091349422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:56 Heat of formation + Delta-G solvation = -102.046477 kcal Electronic energy + Delta-G solvation = -27607.557123 eV Core-core repulsion = 23597.592984 eV Total energy + Delta-G solvation = -4009.964139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76126 -40.70958 -39.85148 -38.99050 -36.19789 -35.86440 -35.01581 -33.18401 -32.12863 -31.09059 -29.10774 -28.08149 -26.39940 -26.09803 -25.45587 -23.64165 -22.39653 -21.67296 -20.45391 -20.37109 -19.05389 -18.65976 -18.07344 -17.92503 -17.26606 -16.90427 -16.67672 -16.55302 -16.27563 -16.09990 -15.67115 -15.63598 -15.20227 -14.98701 -14.68694 -14.63272 -14.37513 -13.98759 -13.57941 -13.38574 -13.17008 -13.05587 -13.00415 -12.91420 -12.86533 -12.68971 -12.62142 -12.16646 -12.05110 -12.00306 -11.56215 -11.50059 -11.38819 -11.08775 -10.98763 -10.82330 -10.73435 -10.11358 -9.77182 -8.93551 -7.91848 -5.19543 1.37167 1.49532 1.50757 1.51737 1.59039 1.73409 1.80787 2.59146 2.90088 3.40184 3.44534 3.45299 3.65826 3.78876 3.80749 3.83545 3.96619 4.00568 4.07436 4.11582 4.31826 4.35610 4.40974 4.46005 4.47609 4.54529 4.61787 4.64149 4.66242 4.80470 4.82678 5.03129 5.05763 5.06711 5.11489 5.22220 5.28493 5.37375 5.46350 5.56863 5.80001 5.89528 6.19185 6.30910 6.52804 6.99493 7.18892 7.36369 8.16168 8.36590 9.31830 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.002281 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.554815 B =12270.221907 C =13406.778264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.590 6.590 4 N -0.616 5.616 5 C 0.070 3.930 6 C 0.051 3.949 7 O -0.380 6.380 8 C 0.066 3.934 9 H 0.118 0.882 10 C 0.519 3.481 11 O -0.569 6.569 12 N -0.702 5.702 13 C 0.138 3.862 14 C -0.092 4.092 15 C -0.140 4.140 16 C 0.140 3.860 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.289 1.289 24 H -0.266 1.266 25 H -0.300 1.300 26 C -0.151 4.151 27 C 0.086 3.914 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.420 0.580 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.617 19.970 8.612 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.305 3.695 3 O -0.471 6.471 4 N -0.350 5.350 5 C -0.052 4.052 6 C -0.026 4.026 7 O -0.298 6.298 8 C 0.004 3.996 9 H 0.135 0.865 10 C 0.304 3.696 11 O -0.447 6.447 12 N -0.356 5.356 13 C 0.015 3.985 14 C -0.111 4.111 15 C -0.179 4.179 16 C 0.031 3.969 17 N -0.369 5.369 18 C -0.369 4.369 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.800 3.200 23 H -0.216 1.216 24 H -0.191 1.191 25 H -0.227 1.227 26 C -0.192 4.192 27 C -0.038 4.038 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.317 19.747 8.377 26.951 hybrid contribution -0.876 -0.274 -0.758 1.191 sum 15.441 19.473 7.618 25.994 Atomic orbital electron populations 1.22069 0.88107 1.06348 1.06890 1.21603 0.92275 0.81944 0.73727 1.90706 1.71931 1.32385 1.52074 1.48268 1.07550 1.06217 1.73005 1.22372 0.80141 1.02473 1.00261 1.23197 0.98510 0.82939 0.97917 1.88102 1.18643 1.30339 1.92715 1.22331 0.83668 0.92638 1.00992 0.86493 1.20364 0.82373 0.90286 0.76601 1.90748 1.60716 1.44225 1.49027 1.45733 1.09566 1.10586 1.69694 1.21259 0.93130 0.83191 1.00946 1.22499 0.90949 0.98276 0.99416 1.23335 0.96914 0.96635 1.01054 1.21998 0.91946 0.91522 0.91453 1.42661 1.08919 1.34253 1.51060 1.19727 0.88245 1.09708 1.19263 0.90167 1.25577 1.02277 0.98358 1.01095 1.69825 1.37172 1.20086 1.35361 0.85172 0.80371 0.77981 0.76459 1.21621 1.19070 1.22702 1.23742 0.97817 1.00653 0.96949 1.22482 0.98694 0.83374 0.99202 0.86207 0.88577 0.87701 0.88284 0.90340 0.91379 0.85421 0.74201 0.91701 0.93276 0.85527 0.90479 0.91711 0.90166 0.79747 0.94218 0.92590 0.90638 0.90285 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.47 71.24 0.67 -0.53 16 2 C 0.51 7.91 7.81 87.66 0.68 8.59 16 3 O -0.59 -14.49 16.57 -3.05 -0.05 -14.54 16 4 N -0.62 -8.15 3.02 -817.36 -2.47 -10.62 16 5 C 0.07 0.96 6.65 86.35 0.57 1.53 16 6 C 0.05 0.64 6.98 72.08 0.50 1.14 16 7 O -0.38 -7.32 9.92 -130.02 -1.29 -8.61 16 8 C 0.07 0.91 3.19 29.95 0.10 1.01 16 9 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 10 C 0.52 10.45 7.18 87.66 0.63 11.08 16 11 O -0.57 -18.12 16.51 15.94 0.26 -17.86 16 12 N -0.70 -10.27 5.52 -463.06 -2.56 -12.83 16 13 C 0.14 2.83 5.52 86.38 0.48 3.30 16 14 C -0.09 -1.80 3.75 -10.21 -0.04 -1.84 16 15 C -0.14 -3.83 7.39 31.12 0.23 -3.60 16 16 C 0.14 4.80 4.47 45.52 0.20 5.01 16 17 N -0.73 -35.12 5.41 -320.45 -1.73 -36.85 16 18 C -0.24 -12.64 9.97 84.03 0.84 -11.81 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 22 Si 0.97 45.04 29.55 68.60 2.03 47.06 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 C -0.15 -4.05 7.45 31.18 0.23 -3.82 16 27 C 0.09 0.87 5.56 86.35 0.48 1.35 16 28 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.30 6.28 -2.39 -0.01 0.28 16 31 H 0.10 1.48 7.06 -2.39 -0.02 1.47 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.42 2.72 8.47 -92.71 -0.79 1.93 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.28 7.86 -2.38 -0.02 1.26 16 38 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 41 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 42 H 0.37 19.60 7.91 -92.71 -0.73 18.86 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.06 1.80 7.91 -2.39 -0.02 1.78 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.14 0.41 5.80 -2.39 -0.01 0.39 16 Total: -1.00 -81.49 384.92 0.00 -81.49 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.53 Total: 24.33 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.05 Total: 7.31 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -6.48 Total: -119.18 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.08 Total: -41.01 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -81.49 0.00 -81.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091349422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.558 kcal (2) G-P(sol) polarization free energy of solvation -81.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds