Wall clock time and date at job start Fri Apr 10 2020 18:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46941 * 2 1 4 4 C 1.50699 * 109.47478 * 119.99655 * 2 1 3 5 5 O 1.21276 * 119.99997 * 108.45881 * 4 2 1 6 6 N 1.34780 * 119.99879 * 288.46814 * 4 2 1 7 7 C 1.46924 * 120.62872 * 356.49538 * 6 4 2 8 8 C 1.53624 * 108.54165 * 126.37679 * 7 6 4 9 9 C 1.53042 * 109.24608 * 54.84989 * 8 7 6 10 10 C 1.53037 * 109.53790 * 298.51699 * 9 8 7 11 11 H 1.09003 * 109.49478 * 301.41228 * 10 9 8 12 12 C 1.50699 * 109.49798 * 181.31513 * 10 9 8 13 13 N 1.34777 * 119.99728 * 60.16209 * 12 10 9 14 14 O 1.21281 * 119.99882 * 240.16083 * 12 10 9 15 15 C 1.46922 * 120.62959 * 176.77773 * 6 4 2 16 16 N 1.46896 * 109.47185 * 240.00210 * 2 1 3 17 17 C 1.47478 * 110.99787 * 325.86064 * 16 2 1 18 18 C 1.53519 * 87.93501 * 138.70643 * 17 16 2 19 19 O 1.42893 * 114.34354 * 87.63164 * 18 17 16 20 20 C 1.50701 * 114.17401 * 220.33169 * 18 17 16 21 21 H 1.08000 * 120.00019 * 93.83558 * 20 18 17 22 22 C 1.37873 * 119.99728 * 273.83660 * 20 18 17 23 23 N 1.31517 * 120.00157 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99642 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46920 * 90.00531 * 24 22 20 26 26 H 1.48502 * 109.46822 * 210.00049 * 24 22 20 27 27 H 1.48491 * 109.47306 * 330.00318 * 24 22 20 28 28 C 1.47479 * 111.00289 * 61.83205 * 16 2 1 29 29 H 1.09001 * 109.47026 * 188.37427 * 1 2 3 30 30 H 1.09000 * 109.47475 * 68.37525 * 1 2 3 31 31 H 1.09006 * 109.47143 * 308.37402 * 1 2 3 32 32 H 1.09004 * 109.58593 * 246.20065 * 7 6 4 33 33 H 1.08999 * 109.59126 * 6.63011 * 7 6 4 34 34 H 1.09009 * 109.63185 * 294.86252 * 8 7 6 35 35 H 1.09002 * 109.43271 * 174.72203 * 8 7 6 36 36 H 1.09003 * 109.46130 * 178.49248 * 9 8 7 37 37 H 1.09003 * 109.44443 * 58.52669 * 9 8 7 38 38 H 0.96998 * 120.00566 * 359.97438 * 13 12 10 39 39 H 0.97003 * 119.99366 * 180.02562 * 13 12 10 40 40 H 1.09006 * 109.58479 * 353.37092 * 15 6 4 41 41 H 1.08999 * 109.58700 * 113.79249 * 15 6 4 42 42 H 1.09004 * 113.48025 * 253.47084 * 17 16 2 43 43 H 1.09001 * 113.47706 * 23.94405 * 17 16 2 44 44 H 0.96702 * 113.99742 * 86.08251 * 19 18 17 45 45 H 0.97001 * 120.00017 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.47832 * 336.06843 * 28 16 2 47 47 H 1.08999 * 113.47758 * 106.47188 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5481 -1.8035 1.1315 6 7 1.9085 -0.1307 2.4410 7 6 1.3560 1.2246 2.5689 8 6 0.1942 1.1858 3.5733 9 6 0.6859 0.5809 4.8903 10 6 1.1615 -0.8535 4.6486 11 1 0.3424 -1.4440 4.2381 12 6 1.6153 -1.4592 5.9518 13 7 0.7500 -1.5749 6.9786 14 8 2.7592 -1.8425 6.0765 15 6 2.3290 -0.8399 3.6570 16 7 2.0196 -0.6924 -1.1994 17 6 1.1214 -1.8006 -1.5736 18 6 1.3004 -1.3776 -3.0384 19 8 2.4260 -1.9703 -3.6893 20 6 0.0374 -1.4414 -3.8580 21 1 -0.5783 -0.5612 -3.9706 22 6 -0.3322 -2.6234 -4.4640 23 7 0.4173 -3.6953 -4.3264 24 14 -1.8982 -2.7026 -5.4793 25 1 -1.5899 -2.3636 -6.8918 26 1 -2.4631 -4.0743 -5.4114 27 1 -2.8862 -1.7331 -4.9418 28 6 1.5831 0.0012 -2.4255 29 1 -0.3633 -1.0167 0.1497 30 1 -0.3634 0.3787 -0.9553 31 1 -0.3634 0.6380 0.8057 32 1 2.1304 1.9025 2.9279 33 1 0.9914 1.5637 1.5993 34 1 -0.6158 0.5760 3.1729 35 1 -0.1661 2.1992 3.7505 36 1 -0.1288 0.5763 5.6144 37 1 1.5123 1.1772 5.2772 38 1 -0.1648 -1.2680 6.8790 39 1 1.0423 -1.9645 7.8175 40 1 2.6067 -1.8635 3.4055 41 1 3.1812 -0.3270 4.1029 42 1 1.5321 -2.7860 -1.3529 43 1 0.1024 -1.6763 -1.2072 44 1 2.2452 -2.8387 -4.0745 45 1 0.1575 -4.5268 -4.7530 46 1 0.6874 0.6065 -2.2864 47 1 2.3848 0.5440 -2.9262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365298043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:50 Heat of formation + Delta-G solvation = -69.723080 kcal Electronic energy + Delta-G solvation = -29186.650166 eV Core-core repulsion = 25178.087674 eV Total energy + Delta-G solvation = -4008.562492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83446 -39.95465 -38.74238 -36.96070 -34.64232 -34.18687 -32.96360 -32.05786 -31.74423 -30.66763 -27.15088 -25.99030 -25.08248 -24.79204 -24.47240 -22.26471 -21.58291 -20.20977 -18.89537 -18.17706 -17.83005 -17.31433 -17.10611 -16.83747 -15.82677 -15.41086 -15.17496 -15.01175 -14.84221 -14.70641 -14.42682 -14.18922 -13.92531 -13.69965 -13.33986 -13.22093 -12.87519 -12.84292 -12.27847 -12.14164 -11.80173 -11.65875 -11.48206 -11.40611 -11.27911 -11.10645 -10.94295 -10.93207 -10.75933 -10.64828 -10.32678 -10.16767 -10.04330 -9.91510 -9.33723 -9.18420 -8.63727 -8.60366 -8.06521 -7.77451 -6.23092 -4.33604 2.31353 2.80485 2.94525 3.20479 3.27955 3.29555 3.33268 4.22772 4.26465 4.36419 4.42481 4.66741 4.70840 4.81408 4.88365 5.01202 5.03400 5.11516 5.22004 5.24329 5.34694 5.45384 5.49370 5.50586 5.64346 5.71593 5.77487 5.87023 5.94818 5.98639 6.03968 6.31684 6.41043 6.42295 6.51629 6.52501 6.74045 6.93922 7.16366 7.27608 7.39077 7.47429 7.80273 7.91937 7.96588 8.06420 8.49709 8.68250 9.36327 9.76214 10.82763 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.002904 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.514861 B = 9638.280691 C = 9655.647807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.028 3.972 3 H 0.093 0.907 4 C 0.527 3.473 5 O -0.509 6.509 6 N -0.622 5.622 7 C 0.101 3.899 8 C -0.135 4.135 9 C -0.108 4.108 10 C -0.125 4.125 11 H 0.103 0.897 12 C 0.526 3.474 13 N -0.856 5.856 14 O -0.537 6.537 15 C 0.134 3.866 16 N -0.448 5.448 17 C -0.025 4.025 18 C 0.249 3.751 19 O -0.570 6.570 20 C -0.535 4.535 21 H 0.066 0.934 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.002 4.002 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.390 0.610 45 H 0.271 0.729 46 H 0.069 0.931 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 11.000 20.291 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.085 4.085 3 H 0.111 0.889 4 C 0.315 3.685 5 O -0.381 6.381 6 N -0.358 5.358 7 C -0.022 4.022 8 C -0.173 4.173 9 C -0.146 4.146 10 C -0.147 4.147 11 H 0.121 0.879 12 C 0.310 3.690 13 N -0.420 5.420 14 O -0.413 6.413 15 C 0.010 3.990 16 N -0.170 5.170 17 C -0.154 4.154 18 C 0.207 3.793 19 O -0.382 6.382 20 C -0.573 4.573 21 H 0.084 0.916 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.130 4.130 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.229 0.771 39 H 0.232 0.768 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.246 0.754 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.456 10.418 20.389 23.156 hybrid contribution -2.453 -0.366 -0.144 2.485 sum -5.909 10.053 20.245 23.364 Atomic orbital electron populations 1.22520 0.95105 1.03252 1.03316 1.22112 0.94644 0.98965 0.92769 0.88866 1.20680 0.78167 0.86077 0.83627 1.90710 1.41546 1.20539 1.85321 1.48123 1.64983 1.16610 1.06104 1.21938 0.95663 0.83772 1.00852 1.22021 0.98389 1.01871 0.95010 1.21509 1.01250 0.93756 0.98110 1.21720 1.01306 0.98149 0.93551 0.87853 1.20502 0.85306 0.77686 0.85490 1.43875 1.15131 1.66530 1.16444 1.90782 1.18941 1.48658 1.82931 1.21211 0.94242 1.00094 0.83404 1.69134 1.43244 1.06448 0.98160 1.24907 0.94627 0.95430 1.00422 1.19327 0.85007 0.87429 0.87554 1.86030 1.36795 1.40025 1.75382 1.21551 1.07008 0.96758 1.31967 0.91614 1.25073 0.97388 0.95191 0.95522 1.69314 1.38726 1.01387 1.44112 0.86417 0.82616 0.77433 0.80476 1.20347 1.21006 1.19776 1.24222 0.98620 0.99107 0.91098 0.90989 0.90028 0.92195 0.91323 0.88851 0.90857 0.90129 0.91218 0.91007 0.77063 0.76816 0.88317 0.90850 0.91146 0.90983 0.75433 0.91817 0.91340 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 7.42 37.16 0.28 -2.37 16 2 C 0.03 0.47 1.98 -68.87 -0.14 0.33 16 3 H 0.09 1.34 7.15 -51.92 -0.37 0.97 16 4 C 0.53 9.23 6.96 -10.98 -0.08 9.15 16 5 O -0.51 -11.43 15.55 5.56 0.09 -11.34 16 6 N -0.62 -8.02 2.97 -172.51 -0.51 -8.53 16 7 C 0.10 0.88 5.69 -3.49 -0.02 0.86 16 8 C -0.13 -0.83 6.06 -26.39 -0.16 -0.99 16 9 C -0.11 -0.65 5.07 -26.69 -0.14 -0.79 16 10 C -0.12 -1.12 2.68 -91.66 -0.25 -1.36 16 11 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 12 C 0.53 5.17 7.43 -10.99 -0.08 5.09 16 13 N -0.86 -4.72 8.76 31.22 0.27 -4.45 16 14 O -0.54 -7.81 16.76 5.56 0.09 -7.72 16 15 C 0.13 1.70 5.05 -3.72 -0.02 1.68 16 16 N -0.45 -9.78 5.95 -237.98 -1.42 -11.19 16 17 C -0.03 -0.60 6.40 -7.55 -0.05 -0.65 16 18 C 0.25 6.40 1.57 -91.23 -0.14 6.25 16 19 O -0.57 -16.09 13.54 -35.23 -0.48 -16.57 16 20 C -0.53 -14.11 8.68 -34.44 -0.30 -14.41 16 21 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 22 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 23 N -0.89 -24.43 11.02 55.43 0.61 -23.82 16 24 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 C 0.00 -0.04 6.96 -7.55 -0.05 -0.09 16 29 H 0.07 1.17 6.38 -51.93 -0.33 0.84 16 30 H 0.08 1.23 5.90 -51.93 -0.31 0.93 16 31 H 0.06 0.63 6.10 -51.93 -0.32 0.32 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.78 4.44 -51.93 -0.23 0.55 16 34 H 0.07 0.49 8.07 -51.92 -0.42 0.07 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.26 7.54 -51.93 -0.39 -0.13 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 1.04 8.24 -40.82 -0.34 0.70 16 39 H 0.40 1.89 8.93 -40.82 -0.36 1.53 16 40 H 0.10 1.58 7.02 -51.93 -0.36 1.21 16 41 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 42 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 43 H 0.07 1.64 4.79 -51.93 -0.25 1.39 16 44 H 0.39 11.19 6.33 45.56 0.29 11.48 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.07 1.31 5.86 -51.93 -0.30 1.01 16 47 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -35.02 362.42 -8.33 -43.35 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.19 Total: 15.14 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.24 Total: 4.46 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -1.04 Total: -47.99 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.30 Total: -35.63 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.02 -8.33 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365298043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.378 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds