Wall clock time and date at job start Fri Apr 10 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47222 * 2 1 4 4 C 1.50703 * 109.46949 * 119.99253 * 2 1 3 5 5 O 1.21282 * 119.99173 * 103.41545 * 4 2 1 6 6 N 1.34772 * 120.00434 * 283.14317 * 4 2 1 7 7 C 1.46923 * 120.62811 * 355.28073 * 6 4 2 8 8 C 1.53187 * 108.77725 * 233.58751 * 7 6 4 9 9 C 1.53046 * 109.31332 * 305.36783 * 8 7 6 10 10 C 1.53036 * 109.53832 * 61.36451 * 9 8 7 11 11 H 1.09005 * 109.50177 * 58.58278 * 10 9 8 12 12 C 1.50697 * 109.49858 * 178.68581 * 10 9 8 13 13 N 1.34776 * 119.99757 * 299.99578 * 12 10 9 14 14 O 1.21285 * 120.00080 * 120.00085 * 12 10 9 15 15 C 1.46920 * 120.63061 * 175.00430 * 6 4 2 16 16 N 1.46895 * 109.46966 * 239.99625 * 2 1 3 17 17 C 1.47483 * 111.00034 * 74.50836 * 16 2 1 18 18 C 1.53518 * 87.93219 * 138.70167 * 17 16 2 19 19 O 1.42893 * 114.17395 * 87.62129 * 18 17 16 20 20 C 1.50700 * 114.33848 * 220.31751 * 18 17 16 21 21 H 1.07994 * 120.00252 * 93.92494 * 20 18 17 22 22 C 1.37884 * 119.99662 * 273.91921 * 20 18 17 23 23 N 1.31509 * 120.00215 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99801 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47208 * 90.00134 * 24 22 20 26 26 H 1.48499 * 109.47196 * 210.00003 * 24 22 20 27 27 H 1.48504 * 109.47115 * 329.99929 * 24 22 20 28 28 C 1.47490 * 110.99681 * 170.47715 * 16 2 1 29 29 H 1.09002 * 109.47424 * 293.97010 * 1 2 3 30 30 H 1.09004 * 109.47187 * 53.97085 * 1 2 3 31 31 H 1.09005 * 109.47129 * 173.97103 * 1 2 3 32 32 H 1.09001 * 109.59060 * 353.37863 * 7 6 4 33 33 H 1.08998 * 109.58495 * 113.66185 * 7 6 4 34 34 H 1.09004 * 109.50123 * 65.31577 * 8 7 6 35 35 H 1.08996 * 109.50186 * 185.41550 * 8 7 6 36 36 H 1.08999 * 109.46150 * 181.38242 * 9 8 7 37 37 H 1.08999 * 109.46126 * 301.35787 * 9 8 7 38 38 H 0.96993 * 120.00552 * 0.02562 * 13 12 10 39 39 H 0.97000 * 119.99482 * 179.97438 * 13 12 10 40 40 H 1.09000 * 109.58789 * 246.19736 * 15 6 4 41 41 H 1.08996 * 109.58998 * 6.62787 * 15 6 4 42 42 H 1.09003 * 113.47188 * 253.46190 * 17 16 2 43 43 H 1.08997 * 113.47406 * 23.93628 * 17 16 2 44 44 H 0.96698 * 113.99815 * 86.15524 * 19 18 17 45 45 H 0.96993 * 120.00248 * 180.02562 * 23 22 20 46 46 H 1.09003 * 113.47415 * 336.06337 * 28 16 2 47 47 H 1.09001 * 113.47721 * 106.47047 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.4642 -1.8403 1.1445 6 7 2.0067 -0.0878 2.4257 7 6 1.5893 1.3171 2.5291 8 6 2.6810 2.1033 3.2617 9 6 2.9713 1.4331 4.6067 10 6 3.4782 0.0087 4.3699 11 1 4.3780 0.0400 3.7555 12 6 3.7943 -0.6392 5.6933 13 7 4.7218 -0.0948 6.5056 14 8 3.2141 -1.6505 6.0274 15 6 2.3900 -0.8029 3.6505 16 7 2.0196 -0.6926 -1.1994 17 6 1.8491 0.1460 -2.4005 18 6 3.2381 -0.3223 -2.8567 19 8 3.2280 -1.5362 -3.6104 20 6 4.0841 0.7580 -3.4797 21 1 4.7819 1.3152 -2.8723 22 6 3.9674 1.0350 -4.8254 23 7 3.1174 0.3568 -5.5650 24 14 5.0166 2.3736 -5.5979 25 1 6.2910 1.7855 -6.0831 26 1 4.2848 2.9793 -6.7392 27 1 5.3082 3.4201 -4.5854 28 6 3.4761 -0.5181 -1.3528 29 1 -0.3634 0.4175 0.9390 30 1 -0.3634 0.6045 -0.8311 31 1 -0.3633 -1.0220 -0.1079 32 1 1.4485 1.7310 1.5306 33 1 0.6544 1.3804 3.0860 34 1 3.5884 2.1150 2.6578 35 1 2.3424 3.1255 3.4302 36 1 3.7304 2.0045 5.1408 37 1 2.0577 1.3993 5.2002 38 1 5.1856 0.7141 6.2386 39 1 4.9250 -0.5116 7.3576 40 1 1.5204 -0.9087 4.2992 41 1 2.7778 -1.7882 3.3923 42 1 1.0423 -0.1886 -3.0527 43 1 1.8006 1.2127 -2.1820 44 1 3.0779 -1.4100 -4.5573 45 1 3.0356 0.5514 -6.5117 46 1 3.8617 0.3715 -0.8547 47 1 4.0482 -1.4151 -1.1159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365298044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:53 Heat of formation + Delta-G solvation = -82.419324 kcal Electronic energy + Delta-G solvation = -29115.965017 eV Core-core repulsion = 25106.851975 eV Total energy + Delta-G solvation = -4009.113042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78272 -39.83157 -38.64517 -36.98717 -34.58188 -34.18667 -33.02103 -32.08597 -31.79778 -31.03952 -27.01185 -26.05200 -25.13135 -24.59465 -24.25283 -22.30833 -21.54297 -20.15839 -18.94716 -18.66009 -17.84952 -17.22815 -17.11963 -16.85288 -15.76129 -15.52905 -15.16956 -15.01860 -14.87398 -14.68788 -14.20289 -14.04102 -13.97945 -13.59930 -13.36649 -13.12808 -12.98299 -12.64156 -12.34279 -12.11025 -11.87585 -11.70718 -11.59057 -11.43471 -11.36109 -11.33711 -10.99417 -10.96973 -10.93901 -10.58337 -10.30686 -10.16432 -10.08094 -10.03862 -9.34442 -9.19692 -8.67102 -8.63414 -8.14262 -7.87205 -6.27426 -4.37659 2.31610 2.78477 2.89307 3.18273 3.25841 3.27569 3.32295 4.22425 4.23725 4.36917 4.43839 4.66784 4.71119 4.77086 4.81832 4.96548 5.01521 5.12368 5.21002 5.31399 5.38725 5.46070 5.51790 5.56586 5.67070 5.70272 5.84297 5.92713 5.94645 6.02856 6.04471 6.27440 6.32796 6.40217 6.41496 6.47250 6.81304 6.94485 7.02531 7.16882 7.32829 7.42583 7.76025 7.91914 7.93030 8.02638 8.44031 8.64673 9.32567 9.73108 10.78442 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.003060 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.558061 B = 9149.465727 C = 9552.318867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.028 3.972 3 H 0.064 0.936 4 C 0.523 3.477 5 O -0.510 6.510 6 N -0.622 5.622 7 C 0.102 3.898 8 C -0.135 4.135 9 C -0.108 4.108 10 C -0.126 4.126 11 H 0.105 0.895 12 C 0.527 3.473 13 N -0.856 5.856 14 O -0.539 6.539 15 C 0.134 3.866 16 N -0.444 5.444 17 C -0.020 4.020 18 C 0.250 3.750 19 O -0.567 6.567 20 C -0.534 4.534 21 H 0.066 0.934 22 C 0.071 3.929 23 N -0.897 5.897 24 Si 0.904 3.096 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.008 3.992 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.401 0.599 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.389 0.611 45 H 0.272 0.728 46 H 0.057 0.943 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 8.407 20.303 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 H 0.081 0.919 4 C 0.311 3.689 5 O -0.383 6.383 6 N -0.358 5.358 7 C -0.021 4.021 8 C -0.174 4.174 9 C -0.146 4.146 10 C -0.148 4.148 11 H 0.123 0.877 12 C 0.311 3.689 13 N -0.419 5.419 14 O -0.415 6.415 15 C 0.011 3.989 16 N -0.168 5.168 17 C -0.149 4.149 18 C 0.208 3.792 19 O -0.379 6.379 20 C -0.573 4.573 21 H 0.084 0.916 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.198 1.198 28 C -0.120 4.120 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.232 0.768 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.245 0.755 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.047 6.162 20.721 21.715 hybrid contribution 1.073 2.293 -0.526 2.585 sum -0.974 8.454 20.196 21.915 Atomic orbital electron populations 1.21671 0.92355 1.03562 1.01658 1.22308 0.97646 0.96485 0.91963 0.91888 1.20744 0.77663 0.86777 0.83722 1.90705 1.44032 1.18589 1.84936 1.48154 1.68428 1.12331 1.06869 1.21826 0.97075 0.80965 1.02213 1.21940 1.00093 0.99271 0.96049 1.21511 1.01832 0.93157 0.98114 1.21808 1.01817 0.96908 0.94260 0.87740 1.20505 0.78617 0.83932 0.85862 1.43875 1.43101 1.31753 1.23218 1.90775 1.50878 1.24629 1.75197 1.21321 0.96458 0.96222 0.84929 1.69078 1.08595 1.39710 0.99383 1.24744 1.03745 0.94955 0.91489 1.19329 0.89522 0.83589 0.86802 1.86068 1.94864 1.30950 1.26050 1.21570 1.23081 1.18158 0.94463 0.91628 1.25068 0.94657 0.96391 0.96986 1.69298 1.35589 1.41391 1.07456 0.86401 0.80277 0.81380 0.78803 1.20297 1.20950 1.19771 1.24022 0.89607 0.99751 0.98653 0.92499 0.91357 0.91226 0.89046 0.91244 0.90848 0.89995 0.91177 0.91018 0.77022 0.76823 0.90783 0.88262 0.90962 0.92362 0.75537 0.91795 0.92462 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.01 37.16 0.33 -1.60 16 2 C 0.03 0.48 1.22 -68.87 -0.08 0.40 16 3 H 0.06 0.98 5.93 -51.93 -0.31 0.67 16 4 C 0.52 9.04 6.50 -10.99 -0.07 8.97 16 5 O -0.51 -11.09 15.55 5.56 0.09 -11.01 16 6 N -0.62 -8.01 2.97 -172.51 -0.51 -8.52 16 7 C 0.10 0.93 5.47 -3.72 -0.02 0.91 16 8 C -0.14 -0.93 6.08 -26.61 -0.16 -1.09 16 9 C -0.11 -0.69 5.07 -26.69 -0.14 -0.82 16 10 C -0.13 -1.15 2.69 -91.43 -0.25 -1.40 16 11 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 12 C 0.53 5.20 7.43 -10.99 -0.08 5.12 16 13 N -0.86 -4.84 8.76 31.22 0.27 -4.57 16 14 O -0.54 -7.75 16.77 5.55 0.09 -7.66 16 15 C 0.13 1.68 5.09 -3.48 -0.02 1.66 16 16 N -0.44 -9.68 5.75 -237.93 -1.37 -11.05 16 17 C -0.02 -0.46 6.55 -7.53 -0.05 -0.51 16 18 C 0.25 6.43 1.56 -91.24 -0.14 6.28 16 19 O -0.57 -15.91 13.53 -35.23 -0.48 -16.38 16 20 C -0.53 -14.17 8.69 -34.44 -0.30 -14.47 16 21 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 22 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 23 N -0.90 -23.89 11.02 55.43 0.61 -23.28 16 24 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 28 C 0.01 0.20 6.25 -7.53 -0.05 0.15 16 29 H 0.06 0.64 7.20 -51.93 -0.37 0.27 16 30 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 0.84 5.32 -51.93 -0.28 0.56 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.29 7.53 -51.93 -0.39 -0.10 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.40 1.15 8.23 -40.82 -0.34 0.81 16 39 H 0.40 1.92 8.93 -40.82 -0.36 1.56 16 40 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 41 H 0.10 1.55 7.00 -51.93 -0.36 1.19 16 42 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.06 1.25 7.65 -51.93 -0.40 0.85 16 44 H 0.39 10.93 6.33 45.56 0.29 11.22 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.06 1.22 7.73 -51.93 -0.40 0.82 16 47 H 0.07 1.86 8.14 -51.93 -0.42 1.43 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -34.21 371.14 -8.51 -42.72 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -6.67 Total: 13.79 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.12 Total: 5.36 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -1.00 Total: -47.43 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.30 Total: -35.05 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.21 -8.51 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365298044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.701 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds