Wall clock time and date at job start Fri Apr 10 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00264 * 2 1 4 4 C 1.50699 * 109.46981 * 270.00700 * 3 2 1 5 5 H 1.07997 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99730 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00449 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99857 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47300 * 89.99666 * 8 6 4 10 10 H 1.48508 * 109.47169 * 209.99694 * 8 6 4 11 11 H 1.48497 * 109.47287 * 329.99397 * 8 6 4 12 12 C 1.34774 * 119.99497 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99714 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00589 * 359.97438 * 12 2 1 15 15 C 1.53003 * 109.47482 * 179.97438 * 14 12 2 16 16 N 1.46893 * 109.47319 * 179.97438 * 15 14 12 17 17 C 1.46679 * 111.00094 * 295.21669 * 16 15 14 18 18 C 1.53314 * 110.25440 * 175.28435 * 17 16 15 19 19 C 1.52701 * 108.50639 * 58.29582 * 18 17 16 20 20 H 1.09001 * 109.38616 * 60.29732 * 19 18 17 21 21 O 1.42637 * 111.87234 * 181.33368 * 19 18 17 22 22 C 1.43182 * 112.46780 * 188.27360 * 21 19 18 23 23 C 1.50217 * 110.73980 * 314.03053 * 22 21 19 24 24 O 1.21278 * 118.52815 * 193.06763 * 23 22 21 25 25 N 1.33547 * 122.71326 * 13.68084 * 23 22 21 26 26 C 1.45650 * 121.65401 * 355.19520 * 25 23 22 27 27 H 1.09002 * 108.97261 * 266.01239 * 26 25 23 28 28 C 1.47138 * 111.00089 * 170.00003 * 16 15 14 29 29 H 1.09001 * 109.46803 * 270.00178 * 1 2 3 30 30 H 1.09003 * 109.47155 * 29.99450 * 1 2 3 31 31 H 1.09001 * 109.47309 * 150.00183 * 1 2 3 32 32 H 1.08998 * 109.46925 * 30.00290 * 3 2 1 33 33 H 1.08993 * 109.47027 * 150.00331 * 3 2 1 34 34 H 0.97002 * 120.00450 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.46845 * 60.00364 * 14 12 2 36 36 H 1.08994 * 109.47362 * 300.00412 * 14 12 2 37 37 H 1.08998 * 109.46575 * 60.00397 * 15 14 12 38 38 H 1.08994 * 109.47271 * 300.00605 * 15 14 12 39 39 H 1.09000 * 109.33933 * 295.52046 * 17 16 15 40 40 H 1.09002 * 109.34669 * 55.04215 * 17 16 15 41 41 H 1.09000 * 109.63376 * 178.00531 * 18 17 16 42 42 H 1.09007 * 109.62872 * 298.59131 * 18 17 16 43 43 H 1.08998 * 109.22235 * 74.35359 * 22 21 19 44 44 H 1.09003 * 109.22502 * 193.75184 * 22 21 19 45 45 H 0.97002 * 118.90397 * 176.49279 * 25 23 22 46 46 H 1.08998 * 109.59761 * 65.68075 * 28 16 15 47 47 H 1.08998 * 109.60240 * 305.20887 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6732 8 14 3.4387 3.4164 -3.4339 9 1 2.3090 4.2597 -3.9009 10 1 4.6993 4.1989 -3.4963 11 1 3.5556 2.2192 -4.3047 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0018 16 7 1.6450 -4.9075 -0.0012 17 6 0.8783 -5.0712 1.2385 18 6 0.0281 -6.3452 1.1724 19 6 0.9562 -7.5359 0.9429 20 1 1.6636 -7.6077 1.7690 21 8 0.2331 -8.7610 0.8390 22 6 1.0945 -9.9044 0.8136 23 6 2.2401 -9.6865 -0.1333 24 8 2.9195 -10.6400 -0.4497 25 7 2.5472 -8.4855 -0.6303 26 6 1.7224 -7.3148 -0.3649 27 1 1.0069 -7.1937 -1.1783 28 6 2.5526 -6.0405 -0.2409 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6086 2.0283 0.5139 33 1 3.1500 1.1383 0.5137 34 1 4.0312 4.4434 -0.8504 35 1 0.7583 -2.5299 -0.8904 36 1 0.7590 -2.5303 0.8896 37 1 3.0068 -3.5780 0.8878 38 1 3.0055 -3.5772 -0.8921 39 1 1.5657 -5.1393 2.0817 40 1 0.2262 -4.2087 1.3763 41 1 -0.5098 -6.4758 2.1114 42 1 -0.6813 -6.2697 0.3482 43 1 1.4857 -10.0814 1.8155 44 1 0.5246 -10.7761 0.4917 45 1 3.3298 -8.3988 -1.1968 46 1 3.2465 -6.1361 0.5942 47 1 3.1084 -5.8749 -1.1638 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412995709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:56 Heat of formation + Delta-G solvation = -102.679510 kcal Electronic energy + Delta-G solvation = -27948.176011 eV Core-core repulsion = 23938.184421 eV Total energy + Delta-G solvation = -4009.991590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40521 -39.43898 -38.78489 -37.62185 -35.35199 -34.84632 -33.27893 -32.61630 -30.85662 -29.77936 -28.14317 -27.53307 -25.88260 -25.01046 -23.63908 -23.29230 -21.90360 -20.65345 -20.24211 -18.44744 -18.17597 -17.64497 -16.59755 -16.49795 -16.23592 -15.95904 -15.74966 -15.47758 -15.33112 -15.22085 -14.77433 -14.51526 -14.32315 -14.17646 -13.83066 -13.37489 -13.19681 -12.80793 -12.50112 -12.30158 -12.21848 -12.07331 -11.94991 -11.85001 -11.63572 -11.45375 -11.25763 -11.18377 -10.93430 -10.88266 -10.75408 -10.58576 -10.18170 -9.96778 -9.65497 -9.56942 -8.95369 -8.66083 -8.46222 -7.68046 -6.06903 -4.11778 2.03631 2.53998 2.99890 3.28116 3.34151 3.36309 3.42148 3.45080 3.82531 4.05487 4.06643 4.30480 4.42584 4.42918 4.59584 4.66163 4.76381 4.84396 4.94309 4.98636 5.10872 5.12384 5.20367 5.25208 5.28764 5.39620 5.45215 5.49925 5.58924 5.71767 5.73125 5.88211 5.97400 6.00626 6.11392 6.19486 6.42203 6.69656 6.69860 6.76480 7.02174 7.40793 7.50522 7.62918 7.89340 8.20575 8.38164 8.87174 9.05384 9.53480 11.01163 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.002189 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.256142 B =12785.993136 C =13413.465541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.136 4.136 15 C 0.076 3.924 16 N -0.540 5.540 17 C 0.050 3.950 18 C -0.104 4.104 19 C 0.073 3.927 20 H 0.066 0.934 21 O -0.363 6.363 22 C 0.048 3.952 23 C 0.493 3.507 24 O -0.547 6.547 25 N -0.711 5.711 26 C 0.111 3.889 27 H 0.096 0.904 28 C 0.053 3.947 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.132 0.868 45 H 0.404 0.596 46 H 0.045 0.955 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 -22.375 5.399 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.177 4.177 15 C -0.052 4.052 16 N -0.265 5.265 17 C -0.077 4.077 18 C -0.142 4.142 19 C 0.015 3.985 20 H 0.084 0.916 21 O -0.281 6.281 22 C -0.031 4.031 23 C 0.279 3.721 24 O -0.425 6.425 25 N -0.364 5.364 26 C 0.005 3.995 27 H 0.114 0.886 28 C -0.076 4.076 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.149 0.851 45 H 0.241 0.759 46 H 0.063 0.937 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.439 -22.686 5.038 25.083 hybrid contribution 1.252 0.561 -0.582 1.490 sum -8.187 -22.126 4.456 24.009 Atomic orbital electron populations 1.21647 0.81391 1.02705 1.00363 1.48167 1.06227 1.07891 1.71188 1.19287 0.92533 0.78134 0.97516 1.21424 1.36483 1.06267 0.92284 0.92469 1.24946 0.95357 0.96423 0.97463 1.69930 1.38408 1.14331 1.30747 0.86493 0.77689 0.78596 0.84615 1.20626 1.21089 1.19887 1.20270 0.88058 0.85160 0.77525 1.90672 1.13995 1.87365 1.50406 1.21667 0.99225 0.92627 1.04132 1.21795 0.94587 0.85918 1.02869 1.61588 1.27084 1.01964 1.35862 1.22197 0.96956 0.98071 0.90514 1.21545 0.97822 0.90687 1.04157 1.22449 0.94517 0.85921 0.95624 0.91598 1.88147 1.31903 1.13490 1.94574 1.22821 0.90646 0.90832 0.98845 1.20873 0.86741 0.82743 0.81775 1.90804 1.52219 1.39494 1.59973 1.45540 1.30626 1.08047 1.52214 1.21598 0.93122 0.85218 0.99537 0.88648 1.22164 0.93874 0.89022 1.02499 0.93809 0.90809 0.92255 0.95045 0.93890 0.92707 0.88485 0.89672 0.93589 0.89466 0.94302 0.88834 0.89592 0.89349 0.88983 0.85065 0.75918 0.93682 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.84 16 2 N -0.60 -12.24 2.86 -182.95 -0.52 -12.76 16 3 C 0.24 6.28 5.16 -5.19 -0.03 6.26 16 4 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.50 9.77 7.67 -10.99 -0.08 9.69 16 13 O -0.55 -13.07 15.56 5.55 0.09 -12.99 16 14 C -0.14 -1.75 4.15 -27.88 -0.12 -1.86 16 15 C 0.08 0.91 4.26 -3.83 -0.02 0.89 16 16 N -0.54 -4.85 4.63 -234.68 -1.09 -5.94 16 17 C 0.05 0.37 5.26 -3.78 -0.02 0.35 16 18 C -0.10 -0.65 5.89 -26.72 -0.16 -0.81 16 19 C 0.07 0.52 2.45 -26.79 -0.07 0.45 16 20 H 0.07 0.45 8.06 -51.93 -0.42 0.04 16 21 O -0.36 -2.87 10.63 -35.23 -0.37 -3.24 16 22 C 0.05 0.34 6.94 35.77 0.25 0.58 16 23 C 0.49 4.71 7.79 -11.77 -0.09 4.62 16 24 O -0.55 -7.26 17.83 5.56 0.10 -7.16 16 25 N -0.71 -5.73 5.30 -54.93 -0.29 -6.02 16 26 C 0.11 0.82 3.12 -68.50 -0.21 0.61 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 28 C 0.05 0.42 5.20 -3.90 -0.02 0.40 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 31 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 35 H 0.10 1.15 7.40 -51.92 -0.38 0.77 16 36 H 0.09 0.89 6.38 -51.93 -0.33 0.56 16 37 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.09 1.17 7.96 -51.93 -0.41 0.76 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.64 6.19 -51.93 -0.32 0.32 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.40 2.99 8.80 -40.82 -0.36 2.63 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -35.09 376.11 -8.63 -43.72 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.55 Total: -1.84 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.37 Total: 9.59 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -1.16 Total: -50.38 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.19 Total: -23.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.09 -8.63 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412995709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.959 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds