Wall clock time and date at job start Fri Apr 10 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.34777 * 119.99909 * 180.02562 * 3 2 1 5 5 O 1.21286 * 120.00016 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00113 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47037 * 180.02562 * 6 4 3 8 8 O 1.21283 * 120.00382 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99897 * 179.97438 * 7 6 4 10 10 C 1.47484 * 125.66370 * 359.69053 * 9 7 6 11 11 C 1.55242 * 104.79209 * 155.93022 * 10 9 7 12 12 C 1.54495 * 101.43968 * 36.65401 * 11 10 9 13 13 C 1.47183 * 125.66326 * 179.97438 * 9 7 6 14 14 C 1.52516 * 110.09771 * 206.80652 * 12 11 10 15 15 N 1.47312 * 108.39493 * 186.95530 * 14 12 11 16 16 C 1.36939 * 121.06215 * 229.41622 * 15 14 12 17 17 H 1.07998 * 120.00361 * 26.65900 * 16 15 14 18 18 C 1.38813 * 119.99774 * 206.66140 * 16 15 14 19 19 N 1.31623 * 119.99815 * 17.08724 * 18 16 15 20 20 Si 1.86805 * 120.00099 * 197.09115 * 18 16 15 21 21 H 1.48499 * 109.46704 * 94.14829 * 20 18 16 22 22 H 1.48491 * 109.47183 * 214.15252 * 20 18 16 23 23 H 1.48500 * 109.46648 * 334.15127 * 20 18 16 24 24 C 1.47160 * 117.86717 * 49.39249 * 15 14 12 25 25 C 1.53269 * 108.55188 * 308.87168 * 24 15 14 26 26 O 1.42063 * 110.38694 * 83.76333 * 12 11 10 27 27 H 1.08997 * 109.47165 * 299.99472 * 1 2 3 28 28 H 1.09002 * 109.47111 * 60.00032 * 1 2 3 29 29 H 1.09008 * 109.46835 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 240.00191 * 2 1 3 31 31 H 1.08993 * 109.47575 * 120.00325 * 2 1 3 32 32 H 0.96998 * 120.00037 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46834 * 299.99663 * 6 4 3 34 34 H 1.08997 * 109.47035 * 59.99973 * 6 4 3 35 35 H 1.08993 * 110.35404 * 274.88560 * 10 9 7 36 36 H 1.09005 * 110.35176 * 37.17073 * 10 9 7 37 37 H 1.08992 * 111.21134 * 278.55694 * 11 10 9 38 38 H 1.09004 * 110.94857 * 154.62714 * 11 10 9 39 39 H 1.08992 * 109.91380 * 300.85043 * 13 9 7 40 40 H 1.09002 * 109.90112 * 61.92547 * 13 9 7 41 41 H 1.09004 * 109.67862 * 306.67378 * 14 12 11 42 42 H 1.08992 * 109.68353 * 67.18789 * 14 12 11 43 43 H 0.97004 * 119.99237 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.62245 * 68.59333 * 24 15 14 45 45 H 1.08997 * 109.62492 * 189.15071 * 24 15 14 46 46 H 1.09007 * 109.50959 * 172.82363 * 25 24 15 47 47 H 1.09004 * 109.51522 * 292.91378 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8457 3.0484 0.0001 7 6 5.3526 3.0484 -0.0013 8 8 5.9591 1.9981 -0.0022 9 7 6.0265 4.2156 -0.0016 10 6 5.4187 5.5594 -0.0071 11 6 6.5017 6.4868 0.6069 12 6 7.7961 5.8666 0.0352 13 6 7.4911 4.3609 -0.0024 14 6 8.9694 6.1507 0.9672 15 7 10.2062 5.6932 0.3105 16 6 11.1048 4.8988 0.9712 17 1 10.7703 4.2547 1.7709 18 6 12.4457 4.9214 0.6131 19 7 12.9183 5.9180 -0.1051 20 14 13.5795 3.5374 1.1504 21 1 13.6567 2.5154 0.0757 22 1 14.9355 4.0823 1.4137 23 1 13.0473 2.9142 2.3888 24 6 10.4446 6.1169 -1.0785 25 6 9.1965 5.7949 -1.9077 26 8 8.0482 6.3642 -1.2714 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3879 2.1185 0.0004 33 1 3.4819 3.5627 -0.8895 34 1 3.4828 3.5617 0.8905 35 1 5.1870 5.8665 -1.0269 36 1 4.5182 5.5707 0.6070 37 1 6.4923 6.4371 1.6956 38 1 6.3757 7.5136 0.2635 39 1 7.9129 3.8745 0.8771 40 1 7.9075 3.9176 -0.9070 41 1 9.0321 7.2213 1.1627 42 1 8.8312 5.6138 1.9056 43 1 13.8553 5.9335 -0.3557 44 1 10.6359 7.1897 -1.1062 45 1 11.3018 5.5790 -1.4833 46 1 9.3050 6.2159 -2.9073 47 1 9.0756 4.7140 -1.9791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485554427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:17 Heat of formation + Delta-G solvation = -76.531293 kcal Electronic energy + Delta-G solvation = -28694.542782 eV Core-core repulsion = 24685.685064 eV Total energy + Delta-G solvation = -4008.857718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52766 -39.70568 -38.25700 -36.13080 -35.33970 -34.42779 -32.27591 -31.51353 -30.98160 -29.78275 -29.06617 -27.57336 -25.65011 -23.61594 -23.16361 -23.04080 -21.20727 -21.02262 -19.33097 -18.65885 -17.54503 -16.97098 -16.76986 -16.36874 -16.00691 -15.93336 -15.26016 -14.99845 -14.79143 -14.43463 -14.33549 -14.01256 -13.71559 -13.52859 -13.45277 -13.04855 -12.86496 -12.83490 -12.62668 -12.29831 -12.20608 -11.98387 -11.83446 -11.70970 -11.42510 -11.26308 -11.04872 -10.82515 -10.72107 -10.48806 -10.20483 -10.13286 -9.95414 -9.52490 -9.35706 -9.29242 -9.05711 -8.51785 -8.41347 -6.73742 -5.82843 -3.26621 2.51573 2.67218 2.83242 3.31231 3.38614 3.45803 3.47520 4.15649 4.33565 4.44447 4.53005 4.68396 4.70977 4.72681 4.90925 4.94801 4.96360 5.05104 5.20019 5.33000 5.37945 5.43800 5.45124 5.54375 5.55550 5.66276 5.79535 5.91250 5.97423 6.04095 6.13705 6.19008 6.29686 6.35188 6.39596 6.45063 6.55056 6.69325 7.10633 7.24190 7.50683 7.66908 7.74228 7.88836 8.09928 8.34268 8.39601 9.12515 9.74851 10.31558 11.25102 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002877 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.552466 B = 9729.337025 C =10760.987789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.739 5.739 4 C 0.510 3.490 5 O -0.489 6.489 6 C -0.159 4.159 7 C 0.523 3.477 8 O -0.496 6.496 9 N -0.620 5.620 10 C 0.102 3.898 11 C -0.119 4.119 12 C 0.096 3.904 13 C 0.098 3.902 14 C 0.131 3.869 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.140 3.860 25 C 0.033 3.967 26 O -0.375 6.375 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.255 0.745 44 H 0.029 0.971 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.678 -0.792 -0.838 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.395 5.395 4 C 0.293 3.707 5 O -0.361 6.361 6 C -0.202 4.202 7 C 0.309 3.691 8 O -0.369 6.369 9 N -0.356 5.356 10 C -0.021 4.021 11 C -0.157 4.157 12 C 0.054 3.946 13 C -0.023 4.023 14 C 0.004 3.996 15 N -0.317 5.317 16 C -0.382 4.382 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.015 3.985 25 C -0.044 4.044 26 O -0.294 6.294 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.692 -2.029 -0.961 24.794 hybrid contribution 0.474 -0.304 0.246 0.614 sum -24.218 -2.333 -0.715 24.341 Atomic orbital electron populations 1.22001 0.94479 1.03225 1.02434 1.21263 0.94037 0.83059 1.02523 1.46040 1.06908 1.08818 1.77715 1.20079 0.82242 0.90960 0.77369 1.90890 1.54356 1.45462 1.45348 1.21558 0.95531 0.96791 1.06337 1.19520 0.88533 0.82848 0.78235 1.90881 1.69212 1.29731 1.47075 1.48622 1.07901 1.05280 1.73823 1.22401 0.96442 0.82246 1.01020 1.22755 0.92692 0.99680 1.00582 1.22297 0.95585 0.90788 0.85960 1.22460 0.78847 0.97568 1.03474 1.21372 0.86345 0.97811 0.94073 1.44110 1.19861 1.58407 1.09316 1.19190 0.87334 1.15029 1.16635 0.91366 1.25034 0.96635 0.97430 1.00425 1.70037 1.13847 1.29127 1.41684 0.86247 0.80062 0.81820 0.78522 1.21335 1.21730 1.20282 1.21421 0.94550 0.98484 0.84084 1.23423 0.87429 0.97397 0.96164 1.87656 1.47652 1.65900 1.28234 0.91989 0.91996 0.90827 0.91552 0.91539 0.76840 0.86316 0.86290 0.90992 0.90965 0.89277 0.88917 0.90337 0.90829 0.95073 0.91763 0.93548 0.95339 0.88731 0.89864 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 10.03 37.16 0.37 -0.32 16 2 C 0.11 0.88 6.39 -4.04 -0.03 0.85 16 3 N -0.74 -5.81 5.56 -60.29 -0.33 -6.14 16 4 C 0.51 6.25 7.82 -10.98 -0.09 6.16 16 5 O -0.49 -8.96 14.18 -18.96 -0.27 -9.23 16 6 C -0.16 -1.55 5.19 -29.04 -0.15 -1.70 16 7 C 0.52 8.25 7.84 -10.99 -0.09 8.16 16 8 O -0.50 -10.65 14.51 -18.96 -0.28 -10.93 16 9 N -0.62 -9.22 3.33 -170.54 -0.57 -9.78 16 10 C 0.10 1.09 6.70 -2.32 -0.02 1.07 16 11 C -0.12 -1.46 6.22 -24.76 -0.15 -1.61 16 12 C 0.10 1.65 0.81 -89.73 -0.07 1.58 16 13 C 0.10 1.80 5.95 -3.32 -0.02 1.78 16 14 C 0.13 2.67 5.30 -3.85 -0.02 2.65 16 15 N -0.59 -14.69 2.97 -172.18 -0.51 -15.20 16 16 C -0.25 -6.91 9.66 -15.06 -0.15 -7.05 16 17 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 18 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 19 N -0.90 -26.04 11.18 55.49 0.62 -25.42 16 20 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.14 3.33 5.45 -3.54 -0.02 3.31 16 25 C 0.03 0.65 6.75 37.30 0.25 0.90 16 26 O -0.38 -6.98 10.26 -35.23 -0.36 -7.34 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 1.67 8.47 -40.82 -0.35 1.32 16 33 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.12 0.75 7.86 -51.93 -0.41 0.34 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 37 H 0.09 0.98 8.01 -51.93 -0.42 0.57 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.59 7.61 -51.93 -0.40 1.19 16 40 H 0.07 1.52 6.02 -51.93 -0.31 1.20 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.27 7.70 -51.93 -0.40 0.87 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 46 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.05 0.92 6.23 -51.93 -0.32 0.59 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -37.19 373.23 -8.87 -46.06 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.51 Total: -0.45 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -0.26 Total: 15.78 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.79 Total: -56.54 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.91 Total: -27.50 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.19 -8.87 -46.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485554427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.468 kcal (2) G-P(sol) polarization free energy of solvation -37.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds