Wall clock time and date at job start Fri Apr 10 2020 18:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.34777 * 119.99909 * 180.02562 * 3 2 1 5 5 O 1.21286 * 120.00016 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00113 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47037 * 180.02562 * 6 4 3 8 8 O 1.21283 * 120.00382 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99897 * 179.97438 * 7 6 4 10 10 C 1.47484 * 125.66370 * 359.69053 * 9 7 6 11 11 C 1.55242 * 104.79209 * 155.93022 * 10 9 7 12 12 C 1.54495 * 101.43968 * 36.65401 * 11 10 9 13 13 C 1.47183 * 125.66326 * 179.97438 * 9 7 6 14 14 C 1.52516 * 110.09771 * 206.80652 * 12 11 10 15 15 N 1.47312 * 108.39493 * 186.95530 * 14 12 11 16 16 C 1.36939 * 121.06215 * 229.41622 * 15 14 12 17 17 H 1.07998 * 120.00361 * 26.65900 * 16 15 14 18 18 C 1.38813 * 119.99774 * 206.66140 * 16 15 14 19 19 N 1.31623 * 119.99815 * 17.08724 * 18 16 15 20 20 Si 1.86805 * 120.00099 * 197.09115 * 18 16 15 21 21 H 1.48499 * 109.46704 * 94.14829 * 20 18 16 22 22 H 1.48491 * 109.47183 * 214.15252 * 20 18 16 23 23 H 1.48500 * 109.46648 * 334.15127 * 20 18 16 24 24 C 1.47160 * 117.86717 * 49.39249 * 15 14 12 25 25 C 1.53269 * 108.55188 * 308.87168 * 24 15 14 26 26 O 1.42063 * 110.38694 * 83.76333 * 12 11 10 27 27 H 1.08997 * 109.47165 * 299.99472 * 1 2 3 28 28 H 1.09002 * 109.47111 * 60.00032 * 1 2 3 29 29 H 1.09008 * 109.46835 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 240.00191 * 2 1 3 31 31 H 1.08993 * 109.47575 * 120.00325 * 2 1 3 32 32 H 0.96998 * 120.00037 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46834 * 299.99663 * 6 4 3 34 34 H 1.08997 * 109.47035 * 59.99973 * 6 4 3 35 35 H 1.08993 * 110.35404 * 274.88560 * 10 9 7 36 36 H 1.09005 * 110.35176 * 37.17073 * 10 9 7 37 37 H 1.08992 * 111.21134 * 278.55694 * 11 10 9 38 38 H 1.09004 * 110.94857 * 154.62714 * 11 10 9 39 39 H 1.08992 * 109.91380 * 300.85043 * 13 9 7 40 40 H 1.09002 * 109.90112 * 61.92547 * 13 9 7 41 41 H 1.09004 * 109.67862 * 306.67378 * 14 12 11 42 42 H 1.08992 * 109.68353 * 67.18789 * 14 12 11 43 43 H 0.97004 * 119.99237 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.62245 * 68.59333 * 24 15 14 45 45 H 1.08997 * 109.62492 * 189.15071 * 24 15 14 46 46 H 1.09007 * 109.50959 * 172.82363 * 25 24 15 47 47 H 1.09004 * 109.51522 * 292.91378 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8457 3.0484 0.0001 7 6 5.3526 3.0484 -0.0013 8 8 5.9591 1.9981 -0.0022 9 7 6.0265 4.2156 -0.0016 10 6 5.4187 5.5594 -0.0071 11 6 6.5017 6.4868 0.6069 12 6 7.7961 5.8666 0.0352 13 6 7.4911 4.3609 -0.0024 14 6 8.9694 6.1507 0.9672 15 7 10.2062 5.6932 0.3105 16 6 11.1048 4.8988 0.9712 17 1 10.7703 4.2547 1.7709 18 6 12.4457 4.9214 0.6131 19 7 12.9183 5.9180 -0.1051 20 14 13.5795 3.5374 1.1504 21 1 13.6567 2.5154 0.0757 22 1 14.9355 4.0823 1.4137 23 1 13.0473 2.9142 2.3888 24 6 10.4446 6.1169 -1.0785 25 6 9.1965 5.7949 -1.9077 26 8 8.0482 6.3642 -1.2714 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3879 2.1185 0.0004 33 1 3.4819 3.5627 -0.8895 34 1 3.4828 3.5617 0.8905 35 1 5.1870 5.8665 -1.0269 36 1 4.5182 5.5707 0.6070 37 1 6.4923 6.4371 1.6956 38 1 6.3757 7.5136 0.2635 39 1 7.9129 3.8745 0.8771 40 1 7.9075 3.9176 -0.9070 41 1 9.0321 7.2213 1.1627 42 1 8.8312 5.6138 1.9056 43 1 13.8553 5.9335 -0.3557 44 1 10.6359 7.1897 -1.1062 45 1 11.3018 5.5790 -1.4833 46 1 9.3050 6.2159 -2.9073 47 1 9.0756 4.7140 -1.9791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485554427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:16 Heat of formation + Delta-G solvation = -105.048672 kcal Electronic energy + Delta-G solvation = -28695.779388 eV Core-core repulsion = 24685.685064 eV Total energy + Delta-G solvation = -4010.094324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72561 -40.87399 -39.51994 -37.49716 -36.27307 -36.14797 -33.64834 -33.01277 -32.29554 -30.58057 -30.35390 -29.18146 -27.32032 -25.03708 -24.67374 -23.80219 -22.67502 -21.98209 -20.55652 -20.08782 -18.85877 -18.53512 -18.04129 -17.35393 -17.02586 -16.96916 -16.89903 -16.23206 -16.08031 -15.94491 -15.58085 -15.33467 -15.23277 -14.89398 -14.64505 -14.46989 -14.42276 -13.83505 -13.45622 -13.30934 -13.20322 -13.10871 -12.94376 -12.89730 -12.66387 -12.65191 -12.49349 -12.32857 -12.27204 -12.18411 -12.12171 -11.83067 -11.20564 -11.14524 -10.83796 -10.59867 -10.47210 -10.06685 -9.64780 -8.75237 -7.94692 -5.40792 1.40131 1.43245 1.51194 1.61041 1.71523 1.73187 2.42357 2.42774 2.75006 3.19388 3.32924 3.47422 3.62472 3.75880 3.94795 3.96982 4.19023 4.22147 4.25594 4.33428 4.35040 4.40084 4.41567 4.54109 4.55518 4.64481 4.68302 4.76452 4.78012 4.89808 4.92260 4.98094 5.08096 5.09955 5.20705 5.24113 5.28846 5.30649 5.50875 5.51539 5.57669 6.25730 6.32737 6.53300 6.63680 7.03670 7.19154 7.39511 7.71612 8.24701 9.10594 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002877 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.552466 B = 9729.337025 C =10760.987789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.715 5.715 4 C 0.501 3.499 5 O -0.564 6.564 6 C -0.142 4.142 7 C 0.512 3.488 8 O -0.568 6.568 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.110 4.110 12 C 0.096 3.904 13 C 0.105 3.895 14 C 0.128 3.872 15 N -0.613 5.613 16 C -0.261 4.261 17 H 0.062 0.938 18 C -0.045 4.045 19 N -0.930 5.930 20 Si 0.962 3.038 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.272 1.272 24 C 0.146 3.854 25 C 0.048 3.952 26 O -0.368 6.368 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.421 0.579 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.252 0.748 44 H 0.010 0.990 45 H 0.062 0.938 46 H 0.112 0.888 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.995 0.968 -0.563 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.371 5.371 4 C 0.287 3.713 5 O -0.440 6.440 6 C -0.183 4.183 7 C 0.300 3.700 8 O -0.445 6.445 9 N -0.352 5.352 10 C -0.019 4.019 11 C -0.148 4.148 12 C 0.054 3.946 13 C -0.018 4.018 14 C 0.002 3.998 15 N -0.337 5.337 16 C -0.391 4.391 17 H 0.080 0.920 18 C -0.241 4.241 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.197 1.197 24 C 0.021 3.979 25 C -0.030 4.030 26 O -0.286 6.286 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.259 0.741 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.105 0.895 36 H 0.145 0.855 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.081 0.919 46 H 0.130 0.870 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -29.127 -0.190 -0.678 29.135 hybrid contribution 1.767 -0.846 0.194 1.969 sum -27.360 -1.036 -0.484 27.384 Atomic orbital electron populations 1.21935 0.91259 1.04097 1.03661 1.21326 0.96520 0.82755 1.00850 1.45866 1.05975 1.09764 1.75497 1.20659 0.82927 0.91465 0.76254 1.90881 1.56436 1.47705 1.49018 1.21610 0.90274 0.95816 1.10626 1.20679 0.91064 0.81774 0.76442 1.90863 1.71144 1.32388 1.50138 1.48724 1.06255 1.07207 1.73035 1.22764 0.97314 0.78823 1.03028 1.22873 0.89571 1.00878 1.01506 1.22331 0.96707 0.90757 0.84777 1.22088 0.81691 0.97787 1.00280 1.21559 0.85766 0.97620 0.94864 1.44337 1.20842 1.58530 1.10016 1.19410 0.88092 1.15245 1.16367 0.91991 1.25701 0.97930 0.99384 1.01125 1.70158 1.13862 1.30561 1.43005 0.85334 0.78314 0.79216 0.78107 1.21620 1.21457 1.19652 1.21247 0.95593 0.96660 0.84438 1.23192 0.85960 0.97070 0.96762 1.87669 1.46541 1.65667 1.28755 0.90659 0.90718 0.90247 0.93410 0.93338 0.74124 0.81854 0.81397 0.89488 0.85462 0.87665 0.86776 0.93606 0.94252 0.94798 0.91821 0.93866 0.97169 0.91917 0.86979 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.03 71.98 0.72 -0.15 16 2 C 0.11 1.56 6.39 86.38 0.55 2.12 16 3 N -0.72 -9.30 5.56 -463.06 -2.57 -11.88 16 4 C 0.50 11.46 7.82 87.66 0.69 12.15 16 5 O -0.56 -21.39 14.18 20.39 0.29 -21.10 16 6 C -0.14 -2.15 5.19 29.10 0.15 -2.00 16 7 C 0.51 15.46 7.84 87.66 0.69 16.15 16 8 O -0.57 -25.44 14.51 20.40 0.30 -25.15 16 9 N -0.62 -17.04 3.33 -811.85 -2.70 -19.74 16 10 C 0.10 1.61 6.70 86.96 0.58 2.19 16 11 C -0.11 -2.24 6.22 31.87 0.20 -2.04 16 12 C 0.10 3.20 0.81 -10.22 -0.01 3.19 16 13 C 0.11 3.90 5.95 86.48 0.51 4.42 16 14 C 0.13 5.23 5.30 86.06 0.46 5.69 16 15 N -0.61 -31.39 2.97 -698.66 -2.07 -33.46 16 16 C -0.26 -14.82 9.66 84.03 0.81 -14.01 16 17 H 0.06 3.51 7.89 -2.91 -0.02 3.49 16 18 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 19 N -0.93 -55.54 11.18 21.65 0.24 -55.30 16 20 Si 0.96 46.79 29.59 68.60 2.03 48.82 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 24 C 0.15 7.19 5.45 86.34 0.47 7.66 16 25 C 0.05 1.88 6.75 72.07 0.49 2.37 16 26 O -0.37 -13.12 10.26 -148.97 -1.53 -14.65 16 27 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.42 1.55 8.47 -92.71 -0.79 0.76 16 33 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.17 0.94 7.86 -2.39 -0.02 0.92 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.13 0.75 7.48 -2.38 -0.02 0.73 16 37 H 0.10 1.85 8.01 -2.39 -0.02 1.83 16 38 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.96 7.61 -2.39 -0.02 1.94 16 40 H 0.04 1.71 6.02 -2.39 -0.01 1.69 16 41 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.06 2.56 7.70 -2.39 -0.02 2.54 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 3.47 6.15 -2.39 -0.01 3.45 16 46 H 0.11 3.75 8.14 -2.38 -0.02 3.73 16 47 H 0.03 1.43 6.23 -2.38 -0.01 1.42 16 Total: -1.00 -91.47 373.23 0.90 -90.57 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 0.19 Total: 6.33 kcal Atomic # 6 Polarization: 28.82 SS G_CDS: 6.73 Total: 35.55 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -7.11 Total: -120.37 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -0.94 Total: -60.90 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -91.47 0.90 -90.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485554427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.475 kcal (2) G-P(sol) polarization free energy of solvation -91.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds