Wall clock time and date at job start Fri Apr 10 2020 18:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.34777 * 120.00168 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99916 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99931 * 180.02562 * 6 5 4 9 9 H 1.09001 * 110.66976 * 59.29812 * 8 6 5 10 10 C 1.55003 * 110.74805 * 296.07919 * 8 6 5 11 11 C 1.55818 * 102.78964 * 241.67363 * 10 8 6 12 12 H 1.09006 * 115.38425 * 158.10917 * 11 10 8 13 13 C 1.55821 * 105.33141 * 287.31476 * 11 10 8 14 14 C 1.55351 * 102.85234 * 72.59210 * 13 11 10 15 15 C 1.55817 * 102.75512 * 0.07167 * 14 13 11 16 16 H 1.09007 * 115.93561 * 158.52823 * 15 14 13 17 17 O 1.46538 * 101.24411 * 32.42112 * 11 10 8 18 18 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 19 19 C 1.46897 * 111.00355 * 84.99974 * 18 2 1 20 20 C 1.50696 * 109.47624 * 179.97438 * 19 18 2 21 21 O 1.21293 * 119.99780 * 0.02562 * 20 19 18 22 22 N 1.34771 * 120.00018 * 180.02562 * 20 19 18 23 23 C 1.37100 * 119.99754 * 180.02562 * 22 20 19 24 24 H 1.08006 * 120.00149 * 359.97438 * 23 22 20 25 25 C 1.38958 * 120.00022 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99678 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99909 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47180 * 59.99969 * 27 25 23 29 29 H 1.48504 * 109.47092 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47388 * 299.99769 * 27 25 23 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 35 35 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 36 36 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 37 37 H 1.08996 * 110.74783 * 0.02562 * 10 8 6 38 38 H 1.09001 * 110.74727 * 123.17057 * 10 8 6 39 39 H 1.08996 * 110.74879 * 191.01408 * 13 11 10 40 40 H 1.09003 * 110.74483 * 314.36101 * 13 11 10 41 41 H 1.09002 * 110.68711 * 241.79630 * 14 13 11 42 42 H 1.08999 * 111.00673 * 118.49824 * 14 13 11 43 43 H 1.00901 * 110.99869 * 321.04664 * 18 2 1 44 44 H 1.09006 * 109.46948 * 300.00869 * 19 18 2 45 45 H 1.09006 * 109.47033 * 59.99701 * 19 18 2 46 46 H 0.96994 * 120.00456 * 359.97438 * 22 20 19 47 47 H 0.97003 * 119.99548 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5698 -1.8841 3.1396 8 6 5.6748 -1.5368 2.1308 9 1 6.1294 -0.5478 2.0725 10 6 6.1149 -2.4150 0.9317 11 6 6.8570 -3.5973 1.6241 12 1 6.9310 -4.5116 1.0352 13 6 8.2052 -2.9995 2.1271 14 6 7.7655 -2.1170 3.3276 15 6 6.2214 -2.3241 3.3594 16 1 5.7309 -2.1082 4.3086 17 8 6.1083 -3.7090 2.8788 18 7 2.0198 -0.6925 -1.1994 19 6 2.0826 0.2225 -2.3469 20 6 2.5887 -0.5215 -3.5557 21 8 2.8690 -1.6985 -3.4699 22 7 2.7298 0.1208 -4.7320 23 6 3.1898 -0.5563 -5.8319 24 1 3.4394 -1.6043 -5.7555 25 6 3.3358 0.1061 -7.0447 26 7 3.0326 1.3813 -7.1375 27 14 3.9632 -0.8163 -8.5430 28 1 3.0416 -1.9380 -8.8555 29 1 4.0273 0.1088 -9.7028 30 1 5.3189 -1.3532 -8.2620 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7516 -0.1583 2.1369 35 1 1.6053 -1.7198 1.2952 36 1 3.9825 -0.4622 0.4320 37 1 5.2479 -2.7743 0.3775 38 1 6.7888 -1.8635 0.2760 39 1 8.8799 -3.7904 2.4547 40 1 8.6703 -2.3901 1.3522 41 1 8.0111 -1.0706 3.1466 42 1 8.2208 -2.4640 4.2551 43 1 1.4496 -1.4979 -1.4100 44 1 1.0872 0.6163 -2.5525 45 1 2.7590 1.0462 -2.1182 46 1 2.5053 1.0619 -4.8008 47 1 3.1349 1.8437 -7.9840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491585599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:40 Heat of formation + Delta-G solvation = -110.669260 kcal Electronic energy + Delta-G solvation = -27968.505077 eV Core-core repulsion = 23958.167026 eV Total energy + Delta-G solvation = -4010.338051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16814 -39.12397 -38.38527 -36.88037 -34.16098 -33.76678 -32.48210 -31.43896 -31.18780 -30.43166 -29.81644 -26.59489 -26.16496 -24.00887 -23.17258 -21.77305 -21.01704 -20.70481 -19.70863 -19.33374 -17.97000 -17.50461 -16.69286 -16.43561 -15.99058 -15.60169 -15.26025 -15.22082 -14.94091 -14.57330 -14.23917 -14.19309 -13.89367 -13.56570 -13.23708 -13.07848 -12.75905 -12.61617 -12.56823 -12.22246 -11.97093 -11.81998 -11.76963 -11.62384 -11.60121 -11.42974 -11.30976 -11.14681 -11.06712 -11.00518 -10.68525 -10.48245 -10.26035 -10.07445 -9.64334 -9.54848 -8.93334 -8.54757 -8.15595 -8.01407 -6.46666 -3.87683 2.70868 3.16330 3.20074 3.22608 3.26754 3.69748 3.84985 4.02096 4.25092 4.29103 4.37180 4.51213 4.67998 4.76417 4.82572 4.91181 4.97153 4.98368 5.08068 5.09273 5.17366 5.23203 5.25432 5.34069 5.48240 5.60517 5.61412 5.64708 5.67146 5.72795 5.79373 5.83639 5.85681 5.91344 5.96448 5.97247 6.02558 6.20900 6.41406 6.53943 7.10353 7.50236 7.54938 7.64876 8.00802 8.32832 8.55734 9.12823 9.48843 10.00063 10.70897 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.002845 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.940965 B = 9838.396901 C =11680.224334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.134 3.866 5 N -0.712 5.712 6 C 0.522 3.478 7 O -0.546 6.546 8 C -0.140 4.140 9 H 0.106 0.894 10 C -0.139 4.139 11 C 0.060 3.940 12 H 0.132 0.868 13 C -0.148 4.148 14 C -0.149 4.149 15 C 0.089 3.911 16 H 0.135 0.865 17 O -0.367 6.367 18 N -0.663 5.663 19 C 0.049 3.951 20 C 0.439 3.561 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.102 0.898 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.409 0.591 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 0.477 17.797 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.101 0.899 4 C 0.010 3.990 5 N -0.363 5.363 6 C 0.308 3.692 7 O -0.423 6.423 8 C -0.162 4.162 9 H 0.124 0.876 10 C -0.177 4.177 11 C 0.002 3.998 12 H 0.149 0.851 13 C -0.186 4.186 14 C -0.186 4.186 15 C 0.031 3.969 16 H 0.153 0.847 17 O -0.285 6.285 18 N -0.296 5.296 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.467 6.467 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.178 4.178 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.992 -0.627 18.604 19.273 hybrid contribution -0.543 0.804 -1.709 1.965 sum 4.448 0.177 16.896 17.472 Atomic orbital electron populations 1.22435 0.96277 1.02736 1.02580 1.21852 0.93367 0.98262 0.90784 0.89854 1.21308 0.80382 1.00850 0.96504 1.45799 1.07628 1.59324 1.23537 1.20295 0.89318 0.77275 0.82292 1.90676 1.70164 1.47629 1.33874 1.23059 0.93262 1.01544 0.98324 0.87571 1.23288 1.01868 0.96235 0.96338 1.24708 0.90360 0.98144 0.86543 0.85069 1.23317 0.97699 0.99567 0.98025 1.23308 0.95632 1.00499 0.99207 1.24566 0.94124 0.81379 0.96880 0.84694 1.90215 1.74642 1.27759 1.35919 1.60182 1.57712 1.09174 1.02509 1.21720 1.00033 0.95629 0.90936 1.19794 0.85300 0.88249 0.84187 1.90534 1.55337 1.16213 1.84602 1.41858 1.57682 1.12445 1.07955 1.19653 1.40150 0.96415 0.86801 0.87976 1.25259 0.97581 0.95762 0.99247 1.69601 1.48525 1.08841 1.27331 0.85925 0.79478 0.78846 0.80029 1.19900 1.20965 1.19852 0.91866 0.91952 0.91973 0.91521 0.91634 0.75531 0.89549 0.89465 0.90817 0.90361 0.90488 0.90554 0.82649 0.93727 0.89696 0.77493 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.16 37.16 0.34 -1.39 16 2 C 0.07 0.74 2.75 -67.71 -0.19 0.55 16 3 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.56 5.37 -4.04 -0.02 1.54 16 5 N -0.71 -8.63 5.37 -60.30 -0.32 -8.95 16 6 C 0.52 7.02 6.99 -10.99 -0.08 6.94 16 7 O -0.55 -9.24 15.89 5.56 0.09 -9.15 16 8 C -0.14 -1.49 2.88 -89.21 -0.26 -1.75 16 9 H 0.11 0.87 7.81 -51.93 -0.41 0.46 16 10 C -0.14 -1.49 6.13 -24.17 -0.15 -1.63 16 11 C 0.06 0.63 5.71 -23.72 -0.14 0.49 16 12 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 13 C -0.15 -1.22 6.53 -23.98 -0.16 -1.37 16 14 C -0.15 -1.21 6.54 -23.98 -0.16 -1.36 16 15 C 0.09 0.97 4.65 -23.72 -0.11 0.86 16 16 H 0.14 1.51 7.75 -51.92 -0.40 1.11 16 17 O -0.37 -5.00 11.66 -35.23 -0.41 -5.41 16 18 N -0.66 -9.42 5.32 -107.99 -0.57 -9.99 16 19 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 20 C 0.44 9.76 7.82 -10.99 -0.09 9.67 16 21 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 22 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 23 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 24 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 27 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 30 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.41 4.76 8.14 -40.82 -0.33 4.42 16 37 H 0.09 1.11 7.76 -51.93 -0.40 0.71 16 38 H 0.09 0.79 7.81 -51.93 -0.41 0.38 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.55 7.81 -51.93 -0.41 0.15 16 41 H 0.08 0.51 7.81 -51.93 -0.41 0.10 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.35 5.51 8.17 -39.29 -0.32 5.18 16 44 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 45 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 46 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -32.90 383.04 -8.45 -41.35 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -7.47 Total: 17.21 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.26 Total: 5.53 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.23 Total: -55.90 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.23 Total: -29.54 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.90 -8.45 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491585599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.323 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds