Wall clock time and date at job start Fri Apr 10 2020 18:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47154 * 2 1 4 4 C 1.52998 * 109.47451 * 120.00384 * 2 1 3 5 5 O 1.42900 * 109.46970 * 53.48325 * 4 2 1 6 6 C 1.35909 * 117.00110 * 175.79739 * 5 4 2 7 7 C 1.38733 * 120.05310 * 4.78950 * 6 5 4 8 8 C 1.38143 * 119.94472 * 179.74051 * 7 6 5 9 9 C 1.38266 * 120.05379 * 0.50309 * 8 7 6 10 10 C 1.38271 * 120.11164 * 359.77437 * 9 8 7 11 11 C 1.38150 * 120.05387 * 359.97025 * 10 9 8 12 12 N 1.46907 * 109.47138 * 240.00186 * 2 1 3 13 13 C 1.46899 * 111.00244 * 170.88015 * 12 2 1 14 14 C 1.50697 * 109.46814 * 294.60551 * 13 12 2 15 15 H 1.07997 * 120.00627 * 4.10241 * 14 13 12 16 16 C 1.37888 * 119.99607 * 184.10403 * 14 13 12 17 17 N 1.31512 * 119.99709 * 184.96653 * 16 14 13 18 18 Si 1.86796 * 119.99799 * 4.96813 * 16 14 13 19 19 H 1.48496 * 109.47139 * 90.00089 * 18 16 14 20 20 H 1.48507 * 109.46717 * 209.99509 * 18 16 14 21 21 H 1.48499 * 109.47498 * 329.99582 * 18 16 14 22 22 C 1.46900 * 111.00118 * 294.83943 * 12 2 1 23 23 C 1.50697 * 109.47304 * 169.99993 * 22 12 2 24 24 C 1.38244 * 119.99586 * 269.72191 * 23 22 12 25 25 C 1.38229 * 119.99560 * 179.76863 * 24 23 22 26 26 C 1.38237 * 120.00342 * 0.50217 * 25 24 23 27 27 C 1.38233 * 119.99739 * 359.75293 * 26 25 24 28 28 C 1.38230 * 120.00230 * 89.99473 * 23 22 12 29 29 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46997 * 299.99779 * 1 2 3 31 31 H 1.08996 * 109.47225 * 59.99647 * 1 2 3 32 32 H 1.09000 * 109.47451 * 173.48321 * 4 2 1 33 33 H 1.08995 * 109.47306 * 293.48845 * 4 2 1 34 34 H 1.08004 * 120.02721 * 359.97438 * 7 6 5 35 35 H 1.07994 * 119.97452 * 180.27721 * 8 7 6 36 36 H 1.08000 * 119.94691 * 179.74179 * 9 8 7 37 37 H 1.07994 * 119.97275 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.02569 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.46833 * 54.60348 * 13 12 2 40 40 H 1.09002 * 109.47062 * 174.60275 * 13 12 2 41 41 H 0.97000 * 119.99974 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.46558 * 289.99706 * 22 12 2 43 43 H 1.09005 * 109.47286 * 49.99213 * 22 12 2 44 44 H 1.07999 * 120.00003 * 0.02562 * 24 23 22 45 45 H 1.08002 * 119.99730 * 180.23613 * 25 24 23 46 46 H 1.07997 * 120.00349 * 179.72997 * 26 25 24 47 47 H 1.07998 * 120.00278 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.00057 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.4430 -2.0172 1.3280 6 6 1.8579 -2.8273 2.3373 7 6 2.7451 -2.3502 3.2912 8 6 3.1612 -3.1739 4.3192 9 6 2.7022 -4.4761 4.3920 10 6 1.8223 -4.9558 3.4394 11 6 1.3991 -4.1344 2.4124 12 7 2.0197 -0.6925 -1.1995 13 6 3.4718 -0.5268 -1.3472 14 6 3.7885 0.9247 -1.5999 15 1 2.9988 1.6612 -1.5804 16 6 5.0867 1.3126 -1.8561 17 7 5.3794 2.5887 -1.9797 18 14 6.4294 0.0253 -2.0274 19 1 6.5366 -0.3920 -3.4485 20 1 7.7246 0.5987 -1.5809 21 1 6.0948 -1.1538 -1.1891 22 6 1.6520 -2.1145 -1.1735 23 6 1.9492 -2.7349 -2.5143 24 6 0.9806 -2.7462 -3.5005 25 6 1.2548 -3.3110 -4.7320 26 6 2.4940 -3.8737 -4.9739 27 6 3.4608 -3.8671 -3.9859 28 6 3.1884 -3.2976 -2.7561 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.1238 -0.8234 1.1927 33 1 1.7751 -0.1447 2.1353 34 1 3.1073 -1.3344 3.2322 35 1 3.8483 -2.8016 5.0644 36 1 3.0318 -5.1199 5.1941 37 1 1.4655 -5.9734 3.4982 38 1 0.7122 -4.5097 1.6683 39 1 3.9694 -0.8536 -0.4342 40 1 3.8224 -1.1268 -2.1869 41 1 6.2925 2.8616 -2.1603 42 1 2.2281 -2.6245 -0.4014 43 1 0.5882 -2.2108 -0.9562 44 1 0.0110 -2.3101 -3.3102 45 1 0.4993 -3.3164 -5.5038 46 1 2.7068 -4.3189 -5.9346 47 1 4.4288 -4.3071 -4.1746 48 1 3.9435 -3.2931 -1.9839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570009147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:04 Heat of formation + Delta-G solvation = 25.603058 kcal Electronic energy + Delta-G solvation = -28188.088592 eV Core-core repulsion = 24594.509015 eV Total energy + Delta-G solvation = -3593.579577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25342 -39.07746 -37.92922 -36.27980 -32.69168 -32.22560 -30.99907 -30.61203 -30.20103 -29.54088 -27.62324 -26.47003 -24.55522 -22.69343 -22.38301 -22.15362 -21.56091 -20.89063 -18.99159 -18.16098 -16.83579 -16.60448 -16.08343 -15.93401 -15.53761 -15.15875 -14.78717 -14.48174 -14.29571 -14.11959 -13.93298 -13.57791 -13.37776 -13.07890 -12.84967 -12.69493 -12.52812 -12.41428 -12.17945 -12.04970 -11.71684 -11.54546 -11.32783 -11.22830 -10.89422 -10.73820 -10.71124 -10.57771 -10.49612 -10.42144 -10.03854 -9.87550 -9.26457 -9.01168 -8.60654 -8.47176 -8.34432 -8.11926 -7.34749 -6.08917 -4.05034 1.33368 1.47240 1.73200 1.77796 3.26295 3.33408 3.35284 3.40078 3.80894 4.11259 4.39542 4.81766 4.84222 4.89355 5.10377 5.19961 5.22803 5.24079 5.28548 5.35871 5.36489 5.38032 5.44318 5.48260 5.61091 5.65338 5.78743 5.88407 5.91342 5.96849 5.99394 6.00189 6.14008 6.28111 6.33705 6.39725 6.42307 6.49483 6.51111 6.56618 6.64091 6.78566 6.81016 6.83575 6.91383 6.94618 7.09065 7.37618 7.55604 7.58653 7.89959 8.01979 8.62191 8.99055 9.54015 11.03992 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.005160 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.715525 B = 5424.757356 C = 6793.650162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 H 0.118 0.882 4 C 0.024 3.976 5 O -0.303 6.303 6 C 0.135 3.865 7 C -0.209 4.209 8 C -0.081 4.081 9 C -0.168 4.168 10 C -0.084 4.084 11 C -0.157 4.157 12 N -0.511 5.511 13 C 0.155 3.845 14 C -0.509 4.509 15 H 0.081 0.919 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.868 3.132 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.269 1.269 22 C 0.088 3.912 23 C -0.061 4.061 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.110 4.110 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.128 0.872 39 H -0.015 1.015 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -14.102 6.828 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 H 0.135 0.865 4 C -0.053 4.053 5 O -0.216 6.216 6 C 0.089 3.911 7 C -0.228 4.228 8 C -0.099 4.099 9 C -0.186 4.186 10 C -0.102 4.102 11 C -0.176 4.176 12 N -0.234 5.234 13 C 0.029 3.971 14 C -0.547 4.547 15 H 0.099 0.901 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.696 3.304 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.039 4.039 23 C -0.061 4.061 24 C -0.119 4.119 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.002 0.998 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.367 -13.767 6.223 17.270 hybrid contribution 1.665 -0.719 0.644 1.925 sum -6.702 -14.486 6.867 17.376 Atomic orbital electron populations 1.21802 0.94844 1.01848 1.01363 1.21917 0.95295 0.99199 0.85174 0.86459 1.23840 0.98968 0.81339 1.01143 1.86283 1.62987 1.26629 1.45718 1.19170 0.93254 0.90910 0.87737 1.21362 1.02487 1.01557 0.97415 1.20942 0.98224 0.93696 0.97067 1.20992 1.00853 0.96188 1.00613 1.20923 0.96523 0.99086 0.93676 1.20452 1.04447 0.91577 1.01122 1.62143 1.16710 1.08811 1.35689 1.20316 0.82979 0.98605 0.95172 1.21016 0.94367 0.91243 1.48087 0.90123 1.24856 0.98263 0.94924 0.94953 1.69889 1.19706 1.14640 1.49475 0.86973 0.81875 0.82461 0.79123 1.19974 1.21301 1.19345 1.21267 1.01277 0.89538 0.91804 1.19948 0.93468 0.96217 0.96472 1.20971 0.99337 0.98682 0.92951 1.21056 0.96944 0.99308 0.97006 1.21009 0.94020 1.00979 0.98768 1.21049 0.98979 1.00386 0.93804 1.21081 0.96452 0.98069 0.97266 0.92367 0.93102 0.91848 0.91140 0.92227 0.85433 0.86116 0.86325 0.85774 0.85433 0.99797 0.94742 0.92683 0.93372 0.90281 0.86289 0.86612 0.86760 0.86704 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.91 37.16 0.33 -1.75 16 2 C 0.09 1.65 2.75 -67.71 -0.19 1.46 16 3 H 0.12 2.33 6.53 -51.93 -0.34 1.99 16 4 C 0.02 0.38 4.03 37.16 0.15 0.53 16 5 O -0.30 -4.67 5.70 -19.45 -0.11 -4.78 16 6 C 0.14 1.96 6.68 -39.22 -0.26 1.70 16 7 C -0.21 -2.88 9.03 -39.43 -0.36 -3.24 16 8 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 9 C -0.17 -1.84 10.04 -39.56 -0.40 -2.24 16 10 C -0.08 -0.93 10.04 -39.60 -0.40 -1.33 16 11 C -0.16 -2.02 9.99 -39.43 -0.39 -2.41 16 12 N -0.51 -10.18 4.45 -229.52 -1.02 -11.20 16 13 C 0.16 3.64 3.40 -4.98 -0.02 3.63 16 14 C -0.51 -13.96 9.02 -34.44 -0.31 -14.27 16 15 H 0.08 2.39 7.21 -52.49 -0.38 2.01 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 18 Si 0.87 21.50 27.37 -169.99 -4.65 16.84 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.40 6.73 56.52 0.38 -6.02 16 22 C 0.09 1.54 3.50 -4.98 -0.02 1.53 16 23 C -0.06 -1.06 4.91 -104.62 -0.51 -1.57 16 24 C -0.10 -1.60 9.70 -39.58 -0.38 -1.98 16 25 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 27 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.11 -1.94 7.86 -39.58 -0.31 -2.25 16 29 H 0.06 0.83 5.74 -51.93 -0.30 0.54 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.27 5.81 -51.93 -0.30 0.97 16 33 H 0.06 0.85 7.70 -51.93 -0.40 0.45 16 34 H 0.13 1.72 6.32 -52.48 -0.33 1.39 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 39 H -0.02 -0.37 5.83 -51.93 -0.30 -0.67 16 40 H 0.03 0.84 4.57 -51.93 -0.24 0.61 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.05 0.88 5.99 -51.93 -0.31 0.57 16 43 H 0.08 1.28 5.77 -51.93 -0.30 0.98 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 46 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 48 H 0.11 2.04 7.88 -52.49 -0.41 1.63 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -30.44 376.36 -11.09 -41.53 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.00 Total: 6.64 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -4.75 Total: -28.44 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.25 Total: -37.47 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.11 Total: -4.78 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.65 Total: 16.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.44 -11.09 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570009147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.134 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds