Wall clock time and date at job start Fri Apr 10 2020 18:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47154 * 2 1 4 4 C 1.52998 * 109.47451 * 120.00384 * 2 1 3 5 5 O 1.42900 * 109.46970 * 53.48325 * 4 2 1 6 6 C 1.35909 * 117.00110 * 175.79739 * 5 4 2 7 7 C 1.38733 * 120.05310 * 4.78950 * 6 5 4 8 8 C 1.38143 * 119.94472 * 179.74051 * 7 6 5 9 9 C 1.38266 * 120.05379 * 0.50309 * 8 7 6 10 10 C 1.38271 * 120.11164 * 359.77437 * 9 8 7 11 11 C 1.38150 * 120.05387 * 359.97025 * 10 9 8 12 12 N 1.46907 * 109.47138 * 240.00186 * 2 1 3 13 13 C 1.46899 * 111.00244 * 170.88015 * 12 2 1 14 14 C 1.50697 * 109.46814 * 294.60551 * 13 12 2 15 15 H 1.07997 * 120.00627 * 4.10241 * 14 13 12 16 16 C 1.37888 * 119.99607 * 184.10403 * 14 13 12 17 17 N 1.31512 * 119.99709 * 184.96653 * 16 14 13 18 18 Si 1.86796 * 119.99799 * 4.96813 * 16 14 13 19 19 H 1.48496 * 109.47139 * 90.00089 * 18 16 14 20 20 H 1.48507 * 109.46717 * 209.99509 * 18 16 14 21 21 H 1.48499 * 109.47498 * 329.99582 * 18 16 14 22 22 C 1.46900 * 111.00118 * 294.83943 * 12 2 1 23 23 C 1.50697 * 109.47304 * 169.99993 * 22 12 2 24 24 C 1.38244 * 119.99586 * 269.72191 * 23 22 12 25 25 C 1.38229 * 119.99560 * 179.76863 * 24 23 22 26 26 C 1.38237 * 120.00342 * 0.50217 * 25 24 23 27 27 C 1.38233 * 119.99739 * 359.75293 * 26 25 24 28 28 C 1.38230 * 120.00230 * 89.99473 * 23 22 12 29 29 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46997 * 299.99779 * 1 2 3 31 31 H 1.08996 * 109.47225 * 59.99647 * 1 2 3 32 32 H 1.09000 * 109.47451 * 173.48321 * 4 2 1 33 33 H 1.08995 * 109.47306 * 293.48845 * 4 2 1 34 34 H 1.08004 * 120.02721 * 359.97438 * 7 6 5 35 35 H 1.07994 * 119.97452 * 180.27721 * 8 7 6 36 36 H 1.08000 * 119.94691 * 179.74179 * 9 8 7 37 37 H 1.07994 * 119.97275 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.02569 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.46833 * 54.60348 * 13 12 2 40 40 H 1.09002 * 109.47062 * 174.60275 * 13 12 2 41 41 H 0.97000 * 119.99974 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.46558 * 289.99706 * 22 12 2 43 43 H 1.09005 * 109.47286 * 49.99213 * 22 12 2 44 44 H 1.07999 * 120.00003 * 0.02562 * 24 23 22 45 45 H 1.08002 * 119.99730 * 180.23613 * 25 24 23 46 46 H 1.07997 * 120.00349 * 179.72997 * 26 25 24 47 47 H 1.07998 * 120.00278 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.00057 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.4430 -2.0172 1.3280 6 6 1.8579 -2.8273 2.3373 7 6 2.7451 -2.3502 3.2912 8 6 3.1612 -3.1739 4.3192 9 6 2.7022 -4.4761 4.3920 10 6 1.8223 -4.9558 3.4394 11 6 1.3991 -4.1344 2.4124 12 7 2.0197 -0.6925 -1.1995 13 6 3.4718 -0.5268 -1.3472 14 6 3.7885 0.9247 -1.5999 15 1 2.9988 1.6612 -1.5804 16 6 5.0867 1.3126 -1.8561 17 7 5.3794 2.5887 -1.9797 18 14 6.4294 0.0253 -2.0274 19 1 6.5366 -0.3920 -3.4485 20 1 7.7246 0.5987 -1.5809 21 1 6.0948 -1.1538 -1.1891 22 6 1.6520 -2.1145 -1.1735 23 6 1.9492 -2.7349 -2.5143 24 6 0.9806 -2.7462 -3.5005 25 6 1.2548 -3.3110 -4.7320 26 6 2.4940 -3.8737 -4.9739 27 6 3.4608 -3.8671 -3.9859 28 6 3.1884 -3.2976 -2.7561 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.1238 -0.8234 1.1927 33 1 1.7751 -0.1447 2.1353 34 1 3.1073 -1.3344 3.2322 35 1 3.8483 -2.8016 5.0644 36 1 3.0318 -5.1199 5.1941 37 1 1.4655 -5.9734 3.4982 38 1 0.7122 -4.5097 1.6683 39 1 3.9694 -0.8536 -0.4342 40 1 3.8224 -1.1268 -2.1869 41 1 6.2925 2.8616 -2.1603 42 1 2.2281 -2.6245 -0.4014 43 1 0.5882 -2.2108 -0.9562 44 1 0.0110 -2.3101 -3.3102 45 1 0.4993 -3.3164 -5.5038 46 1 2.7068 -4.3189 -5.9346 47 1 4.4288 -4.3071 -4.1746 48 1 3.9435 -3.2931 -1.9839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570009147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:03 Heat of formation + Delta-G solvation = 9.910596 kcal Electronic energy + Delta-G solvation = -28188.769069 eV Core-core repulsion = 24594.509015 eV Total energy + Delta-G solvation = -3594.260053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42893 -40.28083 -39.10489 -37.55851 -34.79771 -33.51278 -32.00303 -31.91868 -31.58928 -30.60561 -29.27868 -27.77603 -26.05889 -24.01189 -23.56517 -23.21663 -23.06684 -22.11835 -20.44828 -19.25658 -18.89545 -17.86883 -17.28044 -17.07801 -16.77879 -16.48488 -16.15174 -15.89626 -15.59581 -15.48141 -15.34826 -14.82887 -14.54346 -14.33796 -14.27461 -14.20936 -13.89953 -13.65070 -13.53072 -13.35288 -13.09091 -12.87141 -12.67823 -12.52163 -12.44765 -12.21594 -11.96733 -11.93624 -11.91770 -11.81289 -11.67820 -11.46749 -11.23366 -10.75157 -9.95281 -9.73132 -9.59418 -9.17733 -8.90690 -8.30638 -6.30513 0.39210 0.50067 0.52030 0.57233 1.27526 1.29344 1.38118 2.22629 2.29937 2.85514 2.86154 3.04022 3.39287 3.78901 3.94654 3.95150 4.01799 4.06097 4.07180 4.21795 4.22183 4.28691 4.31025 4.43069 4.48959 4.50836 4.58456 4.62303 4.69811 4.73289 4.74737 4.84993 4.95730 5.03866 5.06651 5.09087 5.20889 5.21624 5.26565 5.37755 5.41825 5.49457 5.54483 5.59388 5.63227 5.65963 5.81138 5.87351 6.01949 6.19498 6.39665 6.44690 6.64610 6.74833 7.32124 8.85498 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.005160 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.715525 B = 5424.757356 C = 6793.650162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.089 3.911 3 H 0.087 0.913 4 C 0.038 3.962 5 O -0.307 6.307 6 C 0.107 3.893 7 C -0.229 4.229 8 C -0.089 4.089 9 C -0.164 4.164 10 C -0.082 4.082 11 C -0.167 4.167 12 N -0.521 5.521 13 C 0.172 3.828 14 C -0.508 4.508 15 H 0.046 0.954 16 C 0.017 3.983 17 N -0.942 5.942 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.258 1.258 22 C 0.101 3.899 23 C -0.085 4.085 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.134 4.134 28 C -0.134 4.134 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.135 0.865 39 H -0.023 1.023 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.039 0.961 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.132 0.868 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 -17.142 6.927 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.020 4.020 3 H 0.104 0.896 4 C -0.039 4.039 5 O -0.221 6.221 6 C 0.062 3.938 7 C -0.247 4.247 8 C -0.107 4.107 9 C -0.182 4.182 10 C -0.099 4.099 11 C -0.185 4.185 12 N -0.244 5.244 13 C 0.045 3.955 14 C -0.546 4.546 15 H 0.064 0.936 16 C -0.180 4.180 17 N -0.583 5.583 18 Si 0.754 3.246 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.182 1.182 22 C -0.026 4.026 23 C -0.085 4.085 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.153 4.153 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.152 0.848 39 H -0.005 1.005 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.111 0.889 44 H 0.149 0.851 45 H 0.165 0.835 46 H 0.164 0.836 47 H 0.150 0.850 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.024 -16.824 6.336 20.115 hybrid contribution 1.782 0.185 0.657 1.908 sum -7.242 -16.639 6.993 19.448 Atomic orbital electron populations 1.21704 0.92216 1.02545 1.02137 1.21865 0.97261 0.97552 0.85286 0.89554 1.23484 0.97241 0.82289 1.00859 1.86224 1.63018 1.26163 1.46689 1.19457 0.94684 0.91630 0.88075 1.21465 1.03129 1.01777 0.98362 1.21257 0.98403 0.94150 0.96843 1.21407 0.99826 0.95968 1.01015 1.21329 0.95784 1.00181 0.92641 1.20699 1.04729 0.91075 1.02035 1.62074 1.14243 1.10842 1.37197 1.19962 0.85511 0.95582 0.94409 1.21235 0.93562 0.92750 1.47051 0.93596 1.25636 1.00726 0.96783 0.94886 1.70023 1.20412 1.16652 1.51196 0.85991 0.79014 0.80206 0.79433 1.19327 1.20620 1.18191 1.21174 1.01673 0.87614 0.92110 1.20055 0.94243 0.97332 0.96898 1.21208 0.99520 0.98928 0.93314 1.21460 0.97760 0.97949 0.97008 1.21424 0.93505 1.00086 0.99624 1.21344 1.00309 1.00128 0.93374 1.21137 0.96435 0.99656 0.98072 0.91554 0.91122 0.92284 0.93767 0.90696 0.86272 0.84190 0.83313 0.82674 0.84756 1.00504 0.95220 0.92528 0.94298 0.88937 0.85123 0.83519 0.83597 0.84962 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.91 71.98 0.64 -3.14 16 2 C 0.09 3.28 2.75 44.91 0.12 3.40 16 3 H 0.09 3.69 6.53 -2.39 -0.02 3.67 16 4 C 0.04 1.28 4.03 71.98 0.29 1.57 16 5 O -0.31 -9.59 5.70 -92.53 -0.53 -10.12 16 6 C 0.11 3.09 6.68 22.50 0.15 3.24 16 7 C -0.23 -6.31 9.03 22.37 0.20 -6.10 16 8 C -0.09 -1.98 10.04 22.25 0.22 -1.76 16 9 C -0.16 -3.13 10.04 22.28 0.22 -2.91 16 10 C -0.08 -1.59 10.04 22.26 0.22 -1.37 16 11 C -0.17 -4.08 9.99 22.37 0.22 -3.86 16 12 N -0.52 -21.40 4.45 -880.06 -3.92 -25.32 16 13 C 0.17 8.36 3.40 85.56 0.29 8.65 16 14 C -0.51 -29.10 9.02 25.60 0.23 -28.87 16 15 H 0.05 2.89 7.21 -2.91 -0.02 2.87 16 16 C 0.02 1.02 5.47 84.66 0.46 1.48 16 17 N -0.94 -58.63 13.96 21.45 0.30 -58.34 16 18 Si 0.93 45.16 27.37 68.60 1.88 47.03 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.26 -11.96 6.73 99.48 0.67 -11.29 16 22 C 0.10 3.57 3.50 85.56 0.30 3.87 16 23 C -0.08 -2.95 4.91 -19.87 -0.10 -3.05 16 24 C -0.11 -3.37 9.70 22.27 0.22 -3.15 16 25 C -0.12 -3.24 10.05 22.27 0.22 -3.01 16 26 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 27 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 28 C -0.13 -4.70 7.86 22.27 0.17 -4.53 16 29 H 0.07 1.84 5.74 -2.39 -0.01 1.83 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.70 5.81 -2.39 -0.01 1.68 16 33 H 0.07 2.22 7.70 -2.39 -0.02 2.21 16 34 H 0.12 3.36 6.32 -2.91 -0.02 3.34 16 35 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 39 H -0.02 -1.12 5.83 -2.39 -0.01 -1.13 16 40 H 0.03 1.48 4.57 -2.39 -0.01 1.47 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.04 1.45 5.99 -2.39 -0.01 1.44 16 43 H 0.09 2.96 5.77 -2.38 -0.01 2.94 16 44 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 46 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 47 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 48 H 0.10 3.66 7.88 -2.91 -0.02 3.63 16 Total: -1.00 -68.16 376.36 3.19 -64.97 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.91 Total: 28.18 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 4.55 Total: -46.41 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.62 Total: -83.65 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.53 Total: -10.12 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.03 kcal Total: -68.16 3.19 -64.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570009147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.881 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds