Wall clock time and date at job start Fri Apr 10 2020 18:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99770 * 2 1 4 4 C 1.53006 * 109.46800 * 269.99666 * 3 2 1 5 5 N 1.46897 * 109.46965 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00133 * 294.30689 * 5 4 3 7 7 C 1.53242 * 109.34034 * 172.74467 * 6 5 4 8 8 N 1.47082 * 108.52022 * 53.83054 * 7 6 5 9 9 C 1.36938 * 120.88168 * 128.79770 * 8 7 6 10 10 H 1.07999 * 119.99575 * 208.68761 * 9 8 7 11 11 C 1.38811 * 120.00111 * 28.68337 * 9 8 7 12 12 N 1.31618 * 120.00068 * 16.01588 * 11 9 8 13 13 Si 1.86794 * 119.99815 * 196.01361 * 11 9 8 14 14 H 1.48508 * 109.47292 * 60.00139 * 13 11 9 15 15 H 1.48504 * 109.47100 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47589 * 300.00390 * 13 11 9 17 17 C 1.47078 * 118.23401 * 308.81314 * 8 7 6 18 18 C 1.46893 * 111.00148 * 169.99915 * 5 4 3 19 19 C 1.34777 * 120.00179 * 179.97438 * 2 1 3 20 20 O 1.21282 * 120.00135 * 179.97438 * 19 2 1 21 21 C 1.50697 * 119.99633 * 359.97438 * 19 2 1 22 22 H 1.09005 * 115.56193 * 47.80601 * 21 19 2 23 23 C 1.53073 * 117.51567 * 262.09521 * 21 19 2 24 24 C 1.53003 * 59.98686 * 252.52485 * 23 21 19 25 25 H 1.08996 * 117.50174 * 252.50236 * 24 23 21 26 26 C 1.50696 * 117.49784 * 107.49890 * 24 23 21 27 27 O 1.20825 * 120.00555 * 8.72672 * 26 24 23 28 28 O 1.34234 * 119.99722 * 188.45788 * 26 24 23 29 29 H 1.09006 * 109.47366 * 270.00120 * 1 2 3 30 30 H 1.09005 * 109.47343 * 30.00052 * 1 2 3 31 31 H 1.09004 * 109.47431 * 149.99930 * 1 2 3 32 32 H 1.08992 * 109.47465 * 29.99966 * 3 2 1 33 33 H 1.09001 * 109.47047 * 150.00432 * 3 2 1 34 34 H 1.08998 * 109.47330 * 299.99953 * 4 3 2 35 35 H 1.09001 * 109.46695 * 60.00550 * 4 3 2 36 36 H 1.09000 * 109.49349 * 292.69959 * 6 5 4 37 37 H 1.08996 * 109.49450 * 52.78795 * 6 5 4 38 38 H 1.09002 * 109.62758 * 294.11641 * 7 6 5 39 39 H 1.09001 * 109.62794 * 173.53652 * 7 6 5 40 40 H 0.96999 * 119.99637 * 179.97438 * 12 11 9 41 41 H 1.09009 * 109.62963 * 291.47380 * 17 8 7 42 42 H 1.09002 * 109.62585 * 170.89678 * 17 8 7 43 43 H 1.08998 * 109.50011 * 307.21808 * 18 5 4 44 44 H 1.09002 * 109.49181 * 67.29925 * 18 5 4 45 45 H 1.08997 * 117.49430 * 145.04371 * 23 21 19 46 46 H 1.09001 * 117.52950 * 359.97438 * 23 21 19 47 47 H 0.96707 * 116.99780 * 180.28206 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1864 2.9829 -1.4426 6 6 2.3666 4.0634 -0.8784 7 6 3.2234 5.3251 -0.7286 8 7 3.8414 5.6273 -2.0286 9 6 3.7448 6.8774 -2.5791 10 1 3.7641 6.9978 -3.6522 11 6 3.6221 7.9898 -1.7579 12 7 3.9103 7.8973 -0.4770 13 14 3.0481 9.6182 -2.4708 14 1 1.6929 9.4525 -3.0552 15 1 3.0009 10.6405 -1.3947 16 1 3.9933 10.0560 -3.5292 17 6 4.5654 4.5510 -2.7218 18 6 3.6559 3.3198 -2.7931 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0001 21 6 1.3854 -2.4722 0.0017 22 1 0.5779 -2.5498 -0.7265 23 6 1.1939 -3.1771 1.3469 24 6 2.1752 -3.7438 0.3188 25 1 1.8876 -4.6576 -0.2011 26 6 3.6470 -3.5951 0.6061 27 8 4.0144 -3.1900 1.6835 28 8 4.5501 -3.9180 -0.3331 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 3.0416 0.9508 -1.9564 35 1 1.5000 1.8407 -1.9564 36 1 1.5286 4.2698 -1.5442 37 1 1.9896 3.7617 0.0988 38 1 4.0011 5.1533 0.0156 39 1 2.5946 6.1600 -0.4192 40 1 3.8249 8.6747 0.0967 41 1 5.4723 4.3048 -2.1693 42 1 4.8240 4.8741 -3.7302 43 1 4.2139 2.4787 -3.2047 44 1 2.7999 3.5365 -3.4322 45 1 0.2607 -3.7181 1.5032 46 1 1.6133 -2.6973 2.2313 47 1 5.4827 -3.8097 -0.1011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598488259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:10 Heat of formation + Delta-G solvation = -53.598941 kcal Electronic energy + Delta-G solvation = -28263.398944 eV Core-core repulsion = 24255.535647 eV Total energy + Delta-G solvation = -4007.863297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04645 -39.66967 -38.18481 -36.90549 -35.92441 -35.78743 -34.30087 -31.58364 -29.92607 -29.50519 -27.05224 -26.55564 -25.57910 -24.34439 -23.08855 -22.49261 -21.40539 -20.83348 -19.35934 -19.08627 -18.40268 -17.59462 -16.90132 -16.57681 -16.11917 -15.94781 -15.31882 -14.93340 -14.77046 -14.54377 -14.38641 -13.87494 -13.63552 -13.49704 -13.42676 -13.26457 -13.11043 -12.91659 -12.63654 -12.46253 -12.25642 -11.86146 -11.63879 -11.40530 -11.26147 -11.16932 -11.04808 -10.91769 -10.72334 -10.63081 -10.44404 -10.28621 -10.04553 -10.02052 -9.74516 -9.61135 -8.86605 -8.48868 -7.80849 -6.61778 -5.76621 -3.19638 1.95911 2.28544 2.59226 2.86593 3.35970 3.38745 3.44270 3.45336 4.02174 4.13327 4.21128 4.45026 4.52241 4.57838 4.85542 4.94082 5.00600 5.10462 5.15488 5.30362 5.35570 5.39374 5.41340 5.45628 5.50525 5.59399 5.81462 5.91536 5.99368 6.08968 6.15576 6.22411 6.30832 6.38447 6.50096 6.55634 6.71420 6.97520 7.12022 7.25617 7.61123 7.65559 7.71717 7.83024 7.86186 7.93811 8.46373 9.23207 9.86069 10.46310 11.32327 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.002377 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.623903 B =11778.964175 C =12181.608901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.607 5.607 3 C 0.118 3.882 4 C 0.045 3.955 5 N -0.530 5.530 6 C 0.032 3.968 7 C 0.180 3.820 8 N -0.595 5.595 9 C -0.254 4.254 10 H 0.064 0.936 11 C 0.003 3.997 12 N -0.903 5.903 13 Si 0.903 3.097 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.149 3.851 18 C 0.047 3.953 19 C 0.535 3.465 20 O -0.520 6.520 21 C -0.162 4.162 22 H 0.142 0.858 23 C -0.119 4.119 24 C -0.138 4.138 25 H 0.144 0.856 26 C 0.523 3.477 27 O -0.510 6.510 28 O -0.512 6.512 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.254 0.746 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 -24.582 1.421 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.341 5.341 3 C -0.004 4.004 4 C -0.084 4.084 5 N -0.255 5.255 6 C -0.097 4.097 7 C 0.054 3.946 8 N -0.319 5.319 9 C -0.383 4.383 10 H 0.082 0.918 11 C -0.196 4.196 12 N -0.547 5.547 13 Si 0.733 3.267 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.022 3.978 18 C -0.082 4.082 19 C 0.322 3.678 20 O -0.396 6.396 21 C -0.183 4.183 22 H 0.159 0.841 23 C -0.156 4.156 24 C -0.158 4.158 25 H 0.162 0.838 26 C 0.365 3.635 27 O -0.398 6.398 28 O -0.323 6.323 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.140 0.860 46 H 0.133 0.867 47 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -9.461 -24.381 2.038 26.232 hybrid contribution -0.591 1.051 -0.852 1.476 sum -10.052 -23.330 1.186 25.431 Atomic orbital electron populations 1.21855 0.79224 1.03323 1.02183 1.47702 1.07148 1.05978 1.73225 1.21568 0.98218 0.83027 0.97600 1.22348 0.96579 0.93300 0.96184 1.61857 1.39063 1.01725 1.22855 1.22974 0.95526 0.93692 0.97463 1.20821 0.94504 0.92001 0.87315 1.44092 1.59674 1.07308 1.20778 1.19135 1.45395 0.82774 0.91044 0.91820 1.25080 1.00803 0.97614 0.96109 1.70018 1.50628 1.29616 1.04432 0.86365 0.78882 0.83472 0.77988 1.21132 1.21605 1.20865 1.20987 0.92974 0.87407 0.96424 1.22600 0.98522 0.99021 0.88056 1.19535 0.87434 0.84362 0.76475 1.90750 1.13541 1.86484 1.48833 1.22453 1.02443 0.90276 1.03124 0.84069 1.23191 0.99656 1.00238 0.92552 1.21688 0.87966 0.99331 1.06766 0.83783 1.21656 0.87907 0.72574 0.81329 1.90700 1.81201 1.42075 1.25814 1.84403 1.21414 1.80400 1.46124 0.92145 0.90688 0.91003 0.90056 0.88783 0.91209 0.95689 0.95749 0.92117 0.95451 0.89707 0.93563 0.95571 0.92606 0.92067 0.95533 0.86039 0.86674 0.72928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.26 59.84 0.61 1.13 16 2 N -0.61 -6.68 2.87 -181.56 -0.52 -7.20 16 3 C 0.12 1.61 5.34 -4.04 -0.02 1.59 16 4 C 0.05 0.69 5.29 -3.82 -0.02 0.67 16 5 N -0.53 -9.79 4.63 -234.33 -1.08 -10.88 16 6 C 0.03 0.63 5.46 -3.70 -0.02 0.61 16 7 C 0.18 4.39 5.40 -3.60 -0.02 4.37 16 8 N -0.60 -15.42 3.03 -172.01 -0.52 -15.94 16 9 C -0.25 -7.09 9.61 -15.06 -0.14 -7.24 16 10 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 11 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 12 N -0.90 -26.51 11.25 55.49 0.62 -25.89 16 13 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.15 3.29 6.69 -3.60 -0.02 3.27 16 18 C 0.05 0.90 5.62 -3.71 -0.02 0.87 16 19 C 0.54 6.55 7.36 -10.99 -0.08 6.47 16 20 O -0.52 -8.64 13.51 -10.92 -0.15 -8.78 16 21 C -0.16 -1.24 4.95 -91.73 -0.45 -1.70 16 22 H 0.14 0.62 7.03 -51.93 -0.36 0.26 16 23 C -0.12 -0.76 9.75 -26.69 -0.26 -1.02 16 24 C -0.14 -1.10 6.30 -91.77 -0.58 -1.68 16 25 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 26 C 0.52 6.27 5.58 36.00 0.20 6.47 16 27 O -0.51 -7.85 16.56 -24.55 -0.41 -8.26 16 28 O -0.51 -5.36 13.42 -39.27 -0.53 -5.88 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.07 0.31 6.26 -51.93 -0.32 -0.01 16 32 H 0.08 1.03 6.33 -51.93 -0.33 0.70 16 33 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 34 H 0.07 1.11 7.97 -51.93 -0.41 0.70 16 35 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 2.27 6.25 -51.93 -0.32 1.94 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 41 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 43 H 0.06 1.03 7.99 -51.93 -0.41 0.62 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.11 1.00 7.70 -51.93 -0.40 0.60 16 47 H 0.41 2.93 9.10 45.56 0.41 3.35 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -36.69 378.26 -9.45 -46.14 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.62 Total: 0.39 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -0.92 Total: 13.82 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -1.50 Total: -59.91 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.08 Total: -22.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.69 -9.45 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598488259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.462 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds