Wall clock time and date at job start Fri Apr 10 2020 18:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99770 * 2 1 4 4 C 1.53006 * 109.46800 * 269.99666 * 3 2 1 5 5 N 1.46897 * 109.46965 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00133 * 294.30689 * 5 4 3 7 7 C 1.53242 * 109.34034 * 172.74467 * 6 5 4 8 8 N 1.47082 * 108.52022 * 53.83054 * 7 6 5 9 9 C 1.36938 * 120.88168 * 128.79770 * 8 7 6 10 10 H 1.07999 * 119.99575 * 208.68761 * 9 8 7 11 11 C 1.38811 * 120.00111 * 28.68337 * 9 8 7 12 12 N 1.31618 * 120.00068 * 16.01588 * 11 9 8 13 13 Si 1.86794 * 119.99815 * 196.01361 * 11 9 8 14 14 H 1.48508 * 109.47292 * 60.00139 * 13 11 9 15 15 H 1.48504 * 109.47100 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47589 * 300.00390 * 13 11 9 17 17 C 1.47078 * 118.23401 * 308.81314 * 8 7 6 18 18 C 1.46893 * 111.00148 * 169.99915 * 5 4 3 19 19 C 1.34777 * 120.00179 * 179.97438 * 2 1 3 20 20 O 1.21282 * 120.00135 * 179.97438 * 19 2 1 21 21 C 1.50697 * 119.99633 * 359.97438 * 19 2 1 22 22 H 1.09005 * 115.56193 * 47.80601 * 21 19 2 23 23 C 1.53073 * 117.51567 * 262.09521 * 21 19 2 24 24 C 1.53003 * 59.98686 * 252.52485 * 23 21 19 25 25 H 1.08996 * 117.50174 * 252.50236 * 24 23 21 26 26 C 1.50696 * 117.49784 * 107.49890 * 24 23 21 27 27 O 1.20825 * 120.00555 * 8.72672 * 26 24 23 28 28 O 1.34234 * 119.99722 * 188.45788 * 26 24 23 29 29 H 1.09006 * 109.47366 * 270.00120 * 1 2 3 30 30 H 1.09005 * 109.47343 * 30.00052 * 1 2 3 31 31 H 1.09004 * 109.47431 * 149.99930 * 1 2 3 32 32 H 1.08992 * 109.47465 * 29.99966 * 3 2 1 33 33 H 1.09001 * 109.47047 * 150.00432 * 3 2 1 34 34 H 1.08998 * 109.47330 * 299.99953 * 4 3 2 35 35 H 1.09001 * 109.46695 * 60.00550 * 4 3 2 36 36 H 1.09000 * 109.49349 * 292.69959 * 6 5 4 37 37 H 1.08996 * 109.49450 * 52.78795 * 6 5 4 38 38 H 1.09002 * 109.62758 * 294.11641 * 7 6 5 39 39 H 1.09001 * 109.62794 * 173.53652 * 7 6 5 40 40 H 0.96999 * 119.99637 * 179.97438 * 12 11 9 41 41 H 1.09009 * 109.62963 * 291.47380 * 17 8 7 42 42 H 1.09002 * 109.62585 * 170.89678 * 17 8 7 43 43 H 1.08998 * 109.50011 * 307.21808 * 18 5 4 44 44 H 1.09002 * 109.49181 * 67.29925 * 18 5 4 45 45 H 1.08997 * 117.49430 * 145.04371 * 23 21 19 46 46 H 1.09001 * 117.52950 * 359.97438 * 23 21 19 47 47 H 0.96707 * 116.99780 * 180.28206 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1864 2.9829 -1.4426 6 6 2.3666 4.0634 -0.8784 7 6 3.2234 5.3251 -0.7286 8 7 3.8414 5.6273 -2.0286 9 6 3.7448 6.8774 -2.5791 10 1 3.7641 6.9978 -3.6522 11 6 3.6221 7.9898 -1.7579 12 7 3.9103 7.8973 -0.4770 13 14 3.0481 9.6182 -2.4708 14 1 1.6929 9.4525 -3.0552 15 1 3.0009 10.6405 -1.3947 16 1 3.9933 10.0560 -3.5292 17 6 4.5654 4.5510 -2.7218 18 6 3.6559 3.3198 -2.7931 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0001 21 6 1.3854 -2.4722 0.0017 22 1 0.5779 -2.5498 -0.7265 23 6 1.1939 -3.1771 1.3469 24 6 2.1752 -3.7438 0.3188 25 1 1.8876 -4.6576 -0.2011 26 6 3.6470 -3.5951 0.6061 27 8 4.0144 -3.1900 1.6835 28 8 4.5501 -3.9180 -0.3331 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 3.0416 0.9508 -1.9564 35 1 1.5000 1.8407 -1.9564 36 1 1.5286 4.2698 -1.5442 37 1 1.9896 3.7617 0.0988 38 1 4.0011 5.1533 0.0156 39 1 2.5946 6.1600 -0.4192 40 1 3.8249 8.6747 0.0967 41 1 5.4723 4.3048 -2.1693 42 1 4.8240 4.8741 -3.7302 43 1 4.2139 2.4787 -3.2047 44 1 2.7999 3.5365 -3.4322 45 1 0.2607 -3.7181 1.5032 46 1 1.6133 -2.6973 2.2313 47 1 5.4827 -3.8097 -0.1011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598488259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:10 Heat of formation + Delta-G solvation = -80.494195 kcal Electronic energy + Delta-G solvation = -28264.565209 eV Core-core repulsion = 24255.535647 eV Total energy + Delta-G solvation = -4009.029562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85910 -40.61885 -39.71559 -37.69495 -37.01130 -36.67795 -35.94204 -33.44598 -31.69720 -30.87437 -28.16162 -27.64555 -26.51347 -25.54104 -24.53641 -24.18932 -22.59708 -21.62618 -20.87569 -20.15944 -19.22220 -18.76329 -18.42496 -17.64118 -17.14271 -16.91951 -16.63008 -16.26099 -16.02829 -15.83997 -15.51416 -15.35177 -15.17595 -14.91844 -14.86966 -14.57386 -14.03011 -13.92889 -13.83768 -13.27425 -13.17221 -13.05062 -13.00620 -12.91569 -12.61567 -12.52405 -12.47750 -12.19946 -12.05690 -11.89130 -11.83385 -11.72058 -11.59996 -11.47753 -11.41239 -10.92666 -10.60577 -9.78614 -9.28989 -8.68626 -7.89311 -5.36847 1.16822 1.44007 1.46216 1.48326 1.55755 1.80734 2.17766 2.49688 2.73963 3.01660 3.26332 3.43656 3.55526 3.63855 3.64683 3.88604 4.04390 4.13499 4.22183 4.30315 4.38020 4.39416 4.41209 4.50455 4.57775 4.65440 4.68029 4.74737 4.77915 4.82989 4.85800 4.94580 4.97146 5.00514 5.04012 5.15417 5.31590 5.42641 5.59609 5.64511 5.72225 6.12938 6.19572 6.32336 6.36213 7.03470 7.08680 7.11407 7.80569 8.37038 9.17716 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.002377 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.623903 B =11778.964175 C =12181.608901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.125 3.875 4 C 0.058 3.942 5 N -0.546 5.546 6 C 0.052 3.948 7 C 0.187 3.813 8 N -0.614 5.614 9 C -0.269 4.269 10 H 0.067 0.933 11 C -0.050 4.050 12 N -0.936 5.936 13 Si 0.972 3.028 14 H -0.276 1.276 15 H -0.293 1.293 16 H -0.276 1.276 17 C 0.145 3.855 18 C 0.059 3.941 19 C 0.520 3.480 20 O -0.577 6.577 21 C -0.156 4.156 22 H 0.187 0.813 23 C -0.101 4.101 24 C -0.151 4.151 25 H 0.183 0.817 26 C 0.513 3.487 27 O -0.558 6.558 28 O -0.514 6.514 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.026 0.974 37 H 0.085 0.915 38 H -0.006 1.006 39 H 0.057 0.943 40 H 0.251 0.749 41 H 0.010 0.990 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.030 0.970 45 H 0.170 0.830 46 H 0.084 0.916 47 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -26.445 0.025 29.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.337 5.337 3 C 0.002 3.998 4 C -0.070 4.070 5 N -0.272 5.272 6 C -0.077 4.077 7 C 0.061 3.939 8 N -0.338 5.338 9 C -0.399 4.399 10 H 0.085 0.915 11 C -0.246 4.246 12 N -0.582 5.582 13 Si 0.800 3.200 14 H -0.201 1.201 15 H -0.219 1.219 16 H -0.201 1.201 17 C 0.019 3.981 18 C -0.070 4.070 19 C 0.309 3.691 20 O -0.457 6.457 21 C -0.176 4.176 22 H 0.204 0.796 23 C -0.138 4.138 24 C -0.170 4.170 25 H 0.201 0.799 26 C 0.358 3.642 27 O -0.450 6.450 28 O -0.327 6.327 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.012 0.988 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.187 0.813 46 H 0.103 0.897 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -12.786 -26.283 0.609 29.234 hybrid contribution 0.537 1.602 -0.410 1.739 sum -12.249 -24.681 0.199 27.554 Atomic orbital electron populations 1.22189 0.76124 1.05186 1.03707 1.47806 1.08911 1.04625 1.72376 1.21279 0.97361 0.84877 0.96310 1.22252 0.96653 0.90925 0.97215 1.61765 1.39994 1.02676 1.22752 1.22635 0.94268 0.91830 0.98985 1.20598 0.93659 0.93482 0.86207 1.44388 1.60531 1.07695 1.21181 1.19492 1.45044 0.83914 0.91414 0.91520 1.25896 1.01137 1.01079 0.96448 1.70191 1.51893 1.30346 1.05739 0.85277 0.78642 0.78971 0.77133 1.20146 1.21894 1.20134 1.21109 0.92970 0.88016 0.96023 1.22411 0.98109 0.98019 0.88464 1.20465 0.87208 0.86119 0.75300 1.90728 1.16208 1.87431 1.51311 1.22567 1.02623 0.87186 1.05217 0.79591 1.23341 1.00644 0.99185 0.90649 1.22026 0.85299 1.01085 1.08574 0.79932 1.22631 0.89798 0.71136 0.80643 1.90669 1.82267 1.44335 1.27705 1.84397 1.22312 1.80008 1.45956 0.90801 0.90349 0.87676 0.89041 0.92370 0.91978 0.93836 0.95558 0.89715 0.98772 0.92452 0.93972 0.97213 0.91937 0.89797 0.95215 0.81257 0.89711 0.71932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.26 127.77 1.31 1.96 16 2 N -0.61 -12.10 2.87 -846.73 -2.43 -14.54 16 3 C 0.13 3.32 5.34 86.38 0.46 3.78 16 4 C 0.06 1.68 5.29 86.31 0.46 2.14 16 5 N -0.55 -19.87 4.63 -895.28 -4.14 -24.01 16 6 C 0.05 2.00 5.46 86.38 0.47 2.47 16 7 C 0.19 9.41 5.40 86.35 0.47 9.88 16 8 N -0.61 -32.47 3.03 -698.10 -2.11 -34.58 16 9 C -0.27 -15.20 9.61 84.03 0.81 -14.39 16 10 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 11 C -0.05 -2.85 4.94 84.86 0.42 -2.43 16 12 N -0.94 -56.61 11.25 21.65 0.24 -56.36 16 13 Si 0.97 45.23 29.58 68.60 2.03 47.26 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.14 6.47 6.69 86.35 0.58 7.05 16 18 C 0.06 2.18 5.62 86.38 0.49 2.66 16 19 C 0.52 12.05 7.36 87.66 0.65 12.69 16 20 O -0.58 -19.61 13.51 12.72 0.17 -19.44 16 21 C -0.16 -1.82 4.95 -11.51 -0.06 -1.88 16 22 H 0.19 0.47 7.03 -2.38 -0.02 0.45 16 23 C -0.10 -0.95 9.75 30.62 0.30 -0.65 16 24 C -0.15 -2.00 6.30 -11.54 -0.07 -2.07 16 25 H 0.18 0.92 8.14 -2.39 -0.02 0.90 16 26 C 0.51 12.29 5.58 71.23 0.40 12.69 16 27 O -0.56 -18.02 16.56 27.52 0.46 -17.56 16 28 O -0.51 -10.87 13.42 -51.46 -0.69 -11.56 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 0.73 8.07 -2.38 -0.02 0.71 16 31 H 0.10 0.31 6.26 -2.38 -0.01 0.30 16 32 H 0.09 2.20 6.33 -2.39 -0.02 2.18 16 33 H 0.06 1.98 7.42 -2.39 -0.02 1.96 16 34 H 0.06 1.91 7.97 -2.39 -0.02 1.89 16 35 H 0.04 1.12 8.12 -2.39 -0.02 1.10 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 2.84 6.16 -2.39 -0.01 2.82 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.06 3.18 6.25 -2.39 -0.01 3.17 16 40 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.06 2.65 7.95 -2.39 -0.02 2.63 16 43 H 0.08 2.70 7.99 -2.39 -0.02 2.68 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.08 1.38 7.70 -2.39 -0.02 1.36 16 47 H 0.42 6.47 9.10 -74.05 -0.67 5.80 16 Total: -1.00 -85.54 378.26 0.50 -85.04 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.31 Total: 11.84 kcal Atomic # 6 Polarization: 27.25 SS G_CDS: 6.67 Total: 33.91 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -8.45 Total: -129.50 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -0.06 Total: -48.56 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -85.54 0.50 -85.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598488259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.546 kcal (2) G-P(sol) polarization free energy of solvation -85.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds