Wall clock time and date at job start Fri Apr 10 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00318 * 2 1 4 4 C 1.52991 * 109.47389 * 270.00612 * 3 2 1 5 5 N 1.46904 * 109.47049 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99900 * 190.00442 * 5 4 3 7 7 C 1.53242 * 109.33655 * 172.74674 * 6 5 4 8 8 N 1.47080 * 108.68439 * 53.73097 * 7 6 5 9 9 C 1.36939 * 120.88106 * 128.91205 * 8 7 6 10 10 H 1.07993 * 120.00178 * 333.02090 * 9 8 7 11 11 C 1.38817 * 119.99535 * 153.01389 * 9 8 7 12 12 N 1.31613 * 120.00436 * 343.77475 * 11 9 8 13 13 Si 1.86798 * 119.99529 * 163.77165 * 11 9 8 14 14 H 1.48505 * 109.47351 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47008 * 120.00262 * 13 11 9 16 16 H 1.48502 * 109.47324 * 240.00480 * 13 11 9 17 17 C 1.47142 * 118.19306 * 309.14998 * 8 7 6 18 18 C 1.46899 * 111.00115 * 65.69860 * 5 4 3 19 19 C 1.34784 * 119.99659 * 180.02562 * 2 1 3 20 20 O 1.21276 * 119.99806 * 179.97438 * 19 2 1 21 21 C 1.50697 * 120.00004 * 359.97438 * 19 2 1 22 22 H 1.09003 * 115.55081 * 34.28533 * 21 19 2 23 23 C 1.52996 * 117.50313 * 248.61203 * 21 19 2 24 24 C 1.52996 * 60.00030 * 252.51290 * 23 21 19 25 25 H 1.09000 * 117.49624 * 107.49277 * 24 23 21 26 26 C 1.50700 * 117.49595 * 252.50624 * 24 23 21 27 27 O 1.20835 * 119.99791 * 68.62888 * 26 24 23 28 28 O 1.34223 * 120.00048 * 248.62412 * 26 24 23 29 29 H 1.08997 * 109.47774 * 89.98769 * 1 2 3 30 30 H 1.09003 * 109.47093 * 209.99825 * 1 2 3 31 31 H 1.09003 * 109.46597 * 329.99325 * 1 2 3 32 32 H 1.09006 * 109.46729 * 150.00267 * 3 2 1 33 33 H 1.09000 * 109.46864 * 30.01003 * 3 2 1 34 34 H 1.09004 * 109.46958 * 60.00188 * 4 3 2 35 35 H 1.09000 * 109.47437 * 300.00041 * 4 3 2 36 36 H 1.08991 * 109.49552 * 52.78389 * 6 5 4 37 37 H 1.09005 * 109.48774 * 292.69882 * 6 5 4 38 38 H 1.09005 * 109.62396 * 173.53854 * 7 6 5 39 39 H 1.08996 * 109.62940 * 293.91618 * 7 6 5 40 40 H 0.96999 * 120.00074 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.46432 * 291.14415 * 17 8 7 42 42 H 1.08997 * 109.81080 * 170.74727 * 17 8 7 43 43 H 1.08995 * 109.49019 * 307.21471 * 18 5 4 44 44 H 1.09004 * 109.49145 * 67.29422 * 18 5 4 45 45 H 1.09003 * 117.49954 * 0.02562 * 23 21 19 46 46 H 1.09007 * 117.49973 * 145.01898 * 23 21 19 47 47 H 0.96704 * 116.99944 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1876 2.9823 -1.4423 6 6 3.2445 3.5576 -2.7928 7 6 3.8560 4.9609 -2.7213 8 7 5.1496 4.8762 -2.0265 9 6 6.2794 5.4215 -2.5758 10 1 6.3635 5.5237 -3.6475 11 6 7.3164 5.8428 -1.7547 12 7 7.1061 6.0208 -0.4677 13 14 9.0103 6.1570 -2.4766 14 1 8.9844 5.8862 -3.9365 15 1 9.3931 7.5727 -2.2430 16 1 10.0002 5.2625 -1.8244 17 6 5.1976 4.1854 -0.7283 18 6 4.5333 2.8126 -0.8782 19 6 2.1388 -1.1673 -0.0005 20 8 3.3516 -1.1673 -0.0010 21 6 1.3853 -2.4723 -0.0005 22 1 0.4463 -2.4730 -0.5541 23 6 1.4610 -3.3319 1.2629 24 6 2.2073 -3.7627 -0.0014 25 1 3.2931 -3.6678 -0.0018 26 6 1.6570 -4.9378 -0.7678 27 8 0.6037 -4.8386 -1.3515 28 8 2.3370 -6.0946 -0.8021 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 3.1500 1.1382 0.5138 33 1 1.6086 2.0283 0.5140 34 1 1.5000 1.8409 -1.9561 35 1 3.0415 0.9509 -1.9564 36 1 2.2371 3.6203 -3.2042 37 1 3.8602 2.9247 -3.4320 38 1 4.0064 5.3465 -3.7297 39 1 3.1879 5.6239 -2.1717 40 1 7.8309 6.3149 0.1060 41 1 4.6600 4.7729 0.0159 42 1 6.2340 4.0583 -0.4155 43 1 4.4605 2.3351 0.0989 44 1 5.1309 2.1901 -1.5441 45 1 2.0556 -2.9534 2.0943 46 1 0.5720 -3.8984 1.5403 47 1 1.9443 -6.8199 -1.3069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598488262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:19 Heat of formation + Delta-G solvation = -56.308438 kcal Electronic energy + Delta-G solvation = -27835.123076 eV Core-core repulsion = 23827.142287 eV Total energy + Delta-G solvation = -4007.980789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11997 -40.06342 -38.18134 -37.08375 -36.25831 -35.75134 -34.29697 -31.57469 -29.88209 -29.50354 -27.07868 -26.69535 -25.66674 -24.25515 -23.01721 -22.49697 -21.56420 -20.93311 -19.28844 -19.05297 -18.64138 -17.86841 -16.87045 -16.56109 -16.40488 -16.04157 -15.65830 -14.99199 -14.66935 -14.50220 -14.33104 -14.12017 -13.59208 -13.44976 -13.38717 -13.29399 -12.98854 -12.93991 -12.75430 -12.52271 -12.32140 -12.05179 -11.84489 -11.38934 -11.34636 -11.20231 -11.02861 -11.01301 -10.89807 -10.71473 -10.38046 -10.24513 -10.04927 -10.00735 -9.71489 -9.57199 -8.86967 -8.47164 -7.80659 -6.61668 -5.74149 -3.15708 1.55877 2.12385 2.36939 2.83772 3.29826 3.40198 3.47736 3.49999 4.00970 4.10639 4.25428 4.48268 4.55032 4.63906 4.82684 4.85386 5.01902 5.08243 5.13385 5.33391 5.36614 5.42482 5.43462 5.43855 5.47732 5.62324 5.85020 5.97491 5.98990 6.00904 6.01949 6.17740 6.26820 6.38643 6.42389 6.58817 6.74080 6.96173 7.12170 7.29447 7.43200 7.61980 7.68934 7.74717 7.85951 7.92932 8.47834 9.25455 9.88758 10.47581 11.34824 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002340 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.898549 B =11963.934971 C =12579.408156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.118 3.882 4 C 0.042 3.958 5 N -0.530 5.530 6 C 0.046 3.954 7 C 0.150 3.850 8 N -0.596 5.596 9 C -0.250 4.250 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.289 1.289 17 C 0.179 3.821 18 C 0.033 3.967 19 C 0.541 3.459 20 O -0.528 6.528 21 C -0.155 4.155 22 H 0.140 0.860 23 C -0.114 4.114 24 C -0.140 4.140 25 H 0.151 0.849 26 C 0.514 3.486 27 O -0.515 6.515 28 O -0.508 6.508 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.055 0.945 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.640 -20.633 3.642 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.342 5.342 3 C -0.004 4.004 4 C -0.088 4.088 5 N -0.256 5.256 6 C -0.084 4.084 7 C 0.023 3.977 8 N -0.319 5.319 9 C -0.380 4.380 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.548 5.548 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.216 1.216 17 C 0.053 3.947 18 C -0.096 4.096 19 C 0.328 3.672 20 O -0.404 6.404 21 C -0.177 4.177 22 H 0.158 0.842 23 C -0.152 4.152 24 C -0.160 4.160 25 H 0.169 0.831 26 C 0.356 3.644 27 O -0.403 6.403 28 O -0.320 6.320 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -16.228 -19.853 4.112 25.969 hybrid contribution 0.920 -0.917 -1.349 1.873 sum -15.308 -20.770 2.763 25.949 Atomic orbital electron populations 1.21881 0.79144 1.03475 1.02203 1.47730 1.07264 1.05977 1.73191 1.21594 0.98134 0.83051 0.97652 1.22363 0.98458 0.91678 0.96258 1.61942 1.17920 1.23063 1.22652 1.22610 0.99031 0.98461 0.88257 1.20960 0.88176 0.92183 0.96373 1.44119 1.03284 1.63544 1.20981 1.19227 0.93403 1.34270 0.91075 0.91683 1.25036 0.99507 0.99264 0.95974 1.70029 1.31083 1.49717 1.03979 0.86227 0.84646 0.77424 0.78499 1.20342 1.21723 1.21576 1.20862 0.99833 0.86905 0.87137 1.22957 0.87656 1.01127 0.97814 1.19444 0.87274 0.84176 0.76327 1.90759 1.13546 1.87031 1.49112 1.22371 1.01812 0.89093 1.04381 0.84207 1.23113 1.02036 0.99490 0.90532 1.21631 1.01963 0.90490 1.01883 0.83099 1.22186 0.81527 0.82956 0.77701 1.90734 1.23304 1.83413 1.42861 1.84508 1.54061 1.23087 1.70314 0.92365 0.90849 0.90410 0.89332 0.89360 0.91509 0.95202 0.92121 0.95493 0.92681 0.95667 0.93700 0.95580 0.89429 0.91893 0.95627 0.86250 0.86798 0.72730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.05 59.85 0.60 1.11 16 2 N -0.61 -6.54 2.87 -181.57 -0.52 -7.06 16 3 C 0.12 1.54 5.38 -4.05 -0.02 1.52 16 4 C 0.04 0.63 5.29 -3.83 -0.02 0.61 16 5 N -0.53 -9.70 4.63 -234.32 -1.08 -10.79 16 6 C 0.05 0.86 5.62 -3.70 -0.02 0.83 16 7 C 0.15 3.27 6.68 -3.60 -0.02 3.24 16 8 N -0.60 -15.55 3.05 -171.96 -0.52 -16.07 16 9 C -0.25 -7.06 9.63 -15.06 -0.15 -7.21 16 10 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 11 C 0.00 0.01 4.96 -17.43 -0.09 -0.07 16 12 N -0.90 -26.72 11.15 55.49 0.62 -26.11 16 13 Si 0.90 22.16 29.58 -169.99 -5.03 17.14 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.18 4.45 5.40 -3.57 -0.02 4.43 16 18 C 0.03 0.69 5.46 -3.70 -0.02 0.67 16 19 C 0.54 6.51 7.46 -10.98 -0.08 6.43 16 20 O -0.53 -8.51 15.84 5.56 0.09 -8.42 16 21 C -0.16 -1.35 4.31 -91.78 -0.40 -1.75 16 22 H 0.14 1.10 6.79 -51.93 -0.35 0.75 16 23 C -0.11 -0.73 9.94 -26.74 -0.27 -0.99 16 24 C -0.14 -1.21 5.81 -91.78 -0.53 -1.74 16 25 H 0.15 1.43 7.67 -51.93 -0.40 1.03 16 26 C 0.51 4.51 8.11 36.01 0.29 4.81 16 27 O -0.51 -5.75 17.02 -18.76 -0.32 -6.07 16 28 O -0.51 -3.33 13.42 -39.24 -0.53 -3.86 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.36 6.64 -51.93 -0.34 0.01 16 31 H 0.08 0.44 7.89 -51.93 -0.41 0.03 16 32 H 0.09 1.36 5.68 -51.93 -0.29 1.06 16 33 H 0.09 1.04 7.89 -51.93 -0.41 0.63 16 34 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 35 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.06 0.96 7.99 -51.93 -0.41 0.54 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 43 H 0.06 1.20 6.16 -51.93 -0.32 0.88 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.11 0.52 8.14 -51.92 -0.42 0.09 16 47 H 0.41 0.87 9.10 45.56 0.41 1.28 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -35.60 382.19 -8.89 -44.49 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.61 Total: -0.90 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -0.74 Total: 11.89 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.51 Total: -60.03 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.76 Total: -18.35 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.60 -8.89 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598488262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.819 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds