Wall clock time and date at job start Fri Apr 10 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00318 * 2 1 4 4 C 1.52991 * 109.47389 * 270.00612 * 3 2 1 5 5 N 1.46904 * 109.47049 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99900 * 190.00442 * 5 4 3 7 7 C 1.53242 * 109.33655 * 172.74674 * 6 5 4 8 8 N 1.47080 * 108.68439 * 53.73097 * 7 6 5 9 9 C 1.36939 * 120.88106 * 128.91205 * 8 7 6 10 10 H 1.07993 * 120.00178 * 333.02090 * 9 8 7 11 11 C 1.38817 * 119.99535 * 153.01389 * 9 8 7 12 12 N 1.31613 * 120.00436 * 343.77475 * 11 9 8 13 13 Si 1.86798 * 119.99529 * 163.77165 * 11 9 8 14 14 H 1.48505 * 109.47351 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47008 * 120.00262 * 13 11 9 16 16 H 1.48502 * 109.47324 * 240.00480 * 13 11 9 17 17 C 1.47142 * 118.19306 * 309.14998 * 8 7 6 18 18 C 1.46899 * 111.00115 * 65.69860 * 5 4 3 19 19 C 1.34784 * 119.99659 * 180.02562 * 2 1 3 20 20 O 1.21276 * 119.99806 * 179.97438 * 19 2 1 21 21 C 1.50697 * 120.00004 * 359.97438 * 19 2 1 22 22 H 1.09003 * 115.55081 * 34.28533 * 21 19 2 23 23 C 1.52996 * 117.50313 * 248.61203 * 21 19 2 24 24 C 1.52996 * 60.00030 * 252.51290 * 23 21 19 25 25 H 1.09000 * 117.49624 * 107.49277 * 24 23 21 26 26 C 1.50700 * 117.49595 * 252.50624 * 24 23 21 27 27 O 1.20835 * 119.99791 * 68.62888 * 26 24 23 28 28 O 1.34223 * 120.00048 * 248.62412 * 26 24 23 29 29 H 1.08997 * 109.47774 * 89.98769 * 1 2 3 30 30 H 1.09003 * 109.47093 * 209.99825 * 1 2 3 31 31 H 1.09003 * 109.46597 * 329.99325 * 1 2 3 32 32 H 1.09006 * 109.46729 * 150.00267 * 3 2 1 33 33 H 1.09000 * 109.46864 * 30.01003 * 3 2 1 34 34 H 1.09004 * 109.46958 * 60.00188 * 4 3 2 35 35 H 1.09000 * 109.47437 * 300.00041 * 4 3 2 36 36 H 1.08991 * 109.49552 * 52.78389 * 6 5 4 37 37 H 1.09005 * 109.48774 * 292.69882 * 6 5 4 38 38 H 1.09005 * 109.62396 * 173.53854 * 7 6 5 39 39 H 1.08996 * 109.62940 * 293.91618 * 7 6 5 40 40 H 0.96999 * 120.00074 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.46432 * 291.14415 * 17 8 7 42 42 H 1.08997 * 109.81080 * 170.74727 * 17 8 7 43 43 H 1.08995 * 109.49019 * 307.21471 * 18 5 4 44 44 H 1.09004 * 109.49145 * 67.29422 * 18 5 4 45 45 H 1.09003 * 117.49954 * 0.02562 * 23 21 19 46 46 H 1.09007 * 117.49973 * 145.01898 * 23 21 19 47 47 H 0.96704 * 116.99944 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1876 2.9823 -1.4423 6 6 3.2445 3.5576 -2.7928 7 6 3.8560 4.9609 -2.7213 8 7 5.1496 4.8762 -2.0265 9 6 6.2794 5.4215 -2.5758 10 1 6.3635 5.5237 -3.6475 11 6 7.3164 5.8428 -1.7547 12 7 7.1061 6.0208 -0.4677 13 14 9.0103 6.1570 -2.4766 14 1 8.9844 5.8862 -3.9365 15 1 9.3931 7.5727 -2.2430 16 1 10.0002 5.2625 -1.8244 17 6 5.1976 4.1854 -0.7283 18 6 4.5333 2.8126 -0.8782 19 6 2.1388 -1.1673 -0.0005 20 8 3.3516 -1.1673 -0.0010 21 6 1.3853 -2.4723 -0.0005 22 1 0.4463 -2.4730 -0.5541 23 6 1.4610 -3.3319 1.2629 24 6 2.2073 -3.7627 -0.0014 25 1 3.2931 -3.6678 -0.0018 26 6 1.6570 -4.9378 -0.7678 27 8 0.6037 -4.8386 -1.3515 28 8 2.3370 -6.0946 -0.8021 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 3.1500 1.1382 0.5138 33 1 1.6086 2.0283 0.5140 34 1 1.5000 1.8409 -1.9561 35 1 3.0415 0.9509 -1.9564 36 1 2.2371 3.6203 -3.2042 37 1 3.8602 2.9247 -3.4320 38 1 4.0064 5.3465 -3.7297 39 1 3.1879 5.6239 -2.1717 40 1 7.8309 6.3149 0.1060 41 1 4.6600 4.7729 0.0159 42 1 6.2340 4.0583 -0.4155 43 1 4.4605 2.3351 0.0989 44 1 5.1309 2.1901 -1.5441 45 1 2.0556 -2.9534 2.0943 46 1 0.5720 -3.8984 1.5403 47 1 1.9443 -6.8199 -1.3069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598488262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:19 Heat of formation + Delta-G solvation = -82.232511 kcal Electronic energy + Delta-G solvation = -27836.247228 eV Core-core repulsion = 23827.142287 eV Total energy + Delta-G solvation = -4009.104941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83755 -40.90093 -39.73054 -37.81735 -37.11783 -36.65881 -35.96315 -33.44073 -31.69115 -30.87841 -28.18373 -27.73165 -26.64941 -25.47140 -24.46635 -24.18789 -22.67917 -21.74080 -20.86772 -20.06396 -19.35063 -18.77594 -18.57219 -17.52168 -17.29375 -16.90574 -16.71294 -16.57730 -16.05032 -15.91434 -15.50179 -15.29826 -15.18797 -14.99546 -14.88086 -14.47211 -14.03177 -13.95376 -13.66618 -13.34911 -13.26271 -13.20181 -12.98127 -12.95525 -12.66978 -12.66459 -12.38158 -12.16569 -12.02994 -11.97801 -11.88795 -11.79914 -11.68428 -11.56960 -11.42273 -10.97381 -10.61879 -9.79412 -9.36029 -8.70159 -7.89557 -5.34711 0.90641 1.32364 1.44025 1.45697 1.56341 1.67139 2.11487 2.48846 2.63159 3.01169 3.26159 3.35442 3.46092 3.65162 3.67442 3.91333 4.02655 4.13202 4.24706 4.27550 4.29840 4.36258 4.46715 4.50385 4.57546 4.60969 4.66993 4.71751 4.75305 4.80710 4.82214 4.89196 4.97548 4.99302 5.00366 5.18327 5.34565 5.44504 5.50793 5.59358 5.65082 6.09181 6.17328 6.29616 6.35738 6.92069 7.04368 7.11252 7.81607 8.36210 9.17770 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002340 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.898549 B =11963.934971 C =12579.408156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.124 3.876 4 C 0.051 3.949 5 N -0.531 5.531 6 C 0.055 3.945 7 C 0.145 3.855 8 N -0.616 5.616 9 C -0.264 4.264 10 H 0.067 0.933 11 C -0.052 4.052 12 N -0.934 5.934 13 Si 0.969 3.031 14 H -0.268 1.268 15 H -0.288 1.288 16 H -0.291 1.291 17 C 0.188 3.812 18 C 0.053 3.947 19 C 0.534 3.466 20 O -0.580 6.580 21 C -0.157 4.157 22 H 0.154 0.846 23 C -0.086 4.086 24 C -0.156 4.156 25 H 0.136 0.864 26 C 0.522 3.478 27 O -0.541 6.541 28 O -0.506 6.506 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.007 0.993 36 H 0.101 0.899 37 H 0.015 0.985 38 H 0.061 0.939 39 H 0.023 0.977 40 H 0.251 0.749 41 H 0.005 0.995 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.005 0.995 45 H 0.123 0.877 46 H 0.141 0.859 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.955 -21.919 3.340 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.337 5.337 3 C 0.001 3.999 4 C -0.078 4.078 5 N -0.256 5.256 6 C -0.074 4.074 7 C 0.020 3.980 8 N -0.341 5.341 9 C -0.394 4.394 10 H 0.084 0.916 11 C -0.248 4.248 12 N -0.581 5.581 13 Si 0.797 3.203 14 H -0.192 1.192 15 H -0.215 1.215 16 H -0.217 1.217 17 C 0.062 3.938 18 C -0.077 4.077 19 C 0.323 3.677 20 O -0.460 6.460 21 C -0.178 4.178 22 H 0.171 0.829 23 C -0.123 4.123 24 C -0.176 4.176 25 H 0.154 0.846 26 C 0.365 3.635 27 O -0.432 6.432 28 O -0.320 6.320 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.026 0.974 36 H 0.119 0.881 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.141 0.859 46 H 0.159 0.841 47 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -18.606 -21.169 3.788 28.437 hybrid contribution 1.585 -0.544 -1.268 2.101 sum -17.021 -21.713 2.521 27.704 Atomic orbital electron populations 1.22190 0.76238 1.05410 1.03430 1.47813 1.08929 1.04721 1.72206 1.21392 0.97754 0.84700 0.96098 1.22387 0.98497 0.89170 0.97747 1.61901 1.16183 1.25036 1.22466 1.22505 1.00671 0.95970 0.88290 1.21128 0.86439 0.94371 0.96090 1.44407 1.04502 1.63801 1.21348 1.19550 0.94598 1.33925 0.91345 0.91557 1.25825 1.02978 0.99590 0.96386 1.70178 1.31894 1.50812 1.05180 0.85190 0.79973 0.76990 0.78192 1.19200 1.21517 1.21738 1.20589 0.97971 0.88695 0.86532 1.22582 0.88692 0.97938 0.98438 1.20047 0.86874 0.85509 0.75256 1.90736 1.15899 1.87840 1.51568 1.22286 1.01658 0.87289 1.06594 0.82874 1.23275 1.02245 0.97441 0.89343 1.21630 1.01354 0.90679 1.03906 0.84611 1.22110 0.81019 0.83317 0.77008 1.90722 1.24459 1.83966 1.44048 1.84472 1.53887 1.23206 1.70458 0.91417 0.88619 0.88930 0.92146 0.87486 0.88705 0.97442 0.88104 0.96700 0.92052 0.95864 0.94013 0.97654 0.92830 0.90486 0.97637 0.85862 0.84128 0.70492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.05 127.77 1.28 1.97 16 2 N -0.61 -11.90 2.87 -846.76 -2.43 -14.33 16 3 C 0.12 3.07 5.38 86.38 0.46 3.54 16 4 C 0.05 1.45 5.29 86.30 0.46 1.91 16 5 N -0.53 -18.91 4.63 -895.25 -4.14 -23.05 16 6 C 0.05 1.96 5.62 86.38 0.49 2.44 16 7 C 0.15 6.27 6.68 86.35 0.58 6.85 16 8 N -0.62 -32.81 3.05 -697.97 -2.13 -34.94 16 9 C -0.26 -15.17 9.63 84.03 0.81 -14.36 16 10 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 11 C -0.05 -3.04 4.96 84.86 0.42 -2.62 16 12 N -0.93 -56.99 11.15 21.65 0.24 -56.75 16 13 Si 0.97 46.36 29.58 68.60 2.03 48.39 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 17 C 0.19 9.73 5.40 86.34 0.47 10.20 16 18 C 0.05 2.24 5.46 86.38 0.47 2.71 16 19 C 0.53 12.47 7.46 87.65 0.65 13.12 16 20 O -0.58 -19.22 15.84 -3.02 -0.05 -19.26 16 21 C -0.16 -2.47 4.31 -11.54 -0.05 -2.52 16 22 H 0.15 2.00 6.79 -2.39 -0.02 1.99 16 23 C -0.09 -0.89 9.94 30.59 0.30 -0.58 16 24 C -0.16 -2.53 5.81 -11.54 -0.07 -2.60 16 25 H 0.14 2.64 7.67 -2.39 -0.02 2.62 16 26 C 0.52 8.44 8.11 71.24 0.58 9.02 16 27 O -0.54 -11.23 17.02 21.94 0.37 -10.86 16 28 O -0.51 -5.89 13.42 -51.35 -0.69 -6.58 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.56 6.64 -2.39 -0.02 0.54 16 31 H 0.09 0.69 7.89 -2.39 -0.02 0.67 16 32 H 0.06 1.86 5.68 -2.38 -0.01 1.85 16 33 H 0.11 2.26 7.89 -2.39 -0.02 2.24 16 34 H 0.09 2.21 7.97 -2.39 -0.02 2.19 16 35 H 0.01 0.24 8.12 -2.39 -0.02 0.23 16 36 H 0.10 2.83 7.99 -2.39 -0.02 2.81 16 37 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.06 2.53 7.95 -2.38 -0.02 2.51 16 39 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 42 H 0.05 3.11 6.16 -2.39 -0.01 3.09 16 43 H 0.08 3.03 6.16 -2.39 -0.01 3.01 16 44 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.43 1.06 9.10 -74.05 -0.67 0.38 16 Total: -1.00 -79.96 382.19 0.37 -79.60 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.31 Total: 8.70 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 6.85 Total: 29.08 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -8.46 Total: -129.07 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.36 Total: -36.70 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -79.96 0.37 -79.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598488262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.637 kcal (2) G-P(sol) polarization free energy of solvation -79.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds