Wall clock time and date at job start Fri Apr 10 2020 18:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99642 * 2 1 4 4 N 1.34774 * 120.00307 * 180.02562 * 2 1 3 5 5 C 1.46971 * 120.59129 * 354.80747 * 4 2 1 6 6 C 1.53365 * 108.63550 * 235.25219 * 5 4 2 7 7 N 1.46964 * 108.63422 * 310.57373 * 6 5 4 8 8 C 1.34772 * 120.59805 * 235.20369 * 7 6 5 9 9 O 1.21283 * 119.99866 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00525 * 179.97438 * 8 7 6 11 11 N 1.46899 * 109.47304 * 180.02562 * 10 8 7 12 12 C 1.47897 * 111.00073 * 69.87380 * 11 10 8 13 13 C 1.53994 * 107.05607 * 145.84087 * 12 11 10 14 14 C 1.54595 * 105.22749 * 358.72699 * 13 12 11 15 15 O 1.42903 * 110.72160 * 96.44744 * 14 13 12 16 16 C 1.50698 * 110.72413 * 219.72896 * 14 13 12 17 17 H 1.08001 * 119.99265 * 118.54758 * 16 14 13 18 18 C 1.37878 * 120.00192 * 298.54809 * 16 14 13 19 19 N 1.31515 * 119.99704 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99944 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47095 * 89.99622 * 20 18 16 22 22 H 1.48504 * 109.46820 * 210.00282 * 20 18 16 23 23 H 1.48500 * 109.46946 * 329.99735 * 20 18 16 24 24 C 1.48534 * 110.99920 * 187.27389 * 11 10 8 25 25 C 1.46968 * 118.81111 * 55.48262 * 7 6 5 26 26 C 1.46964 * 120.59833 * 174.83209 * 4 2 1 27 27 H 1.08996 * 109.47286 * 264.71147 * 1 2 3 28 28 H 1.09000 * 109.47524 * 24.71510 * 1 2 3 29 29 H 1.08997 * 109.47242 * 144.71202 * 1 2 3 30 30 H 1.09006 * 109.60873 * 115.50390 * 5 4 2 31 31 H 1.09001 * 109.61042 * 354.99557 * 5 4 2 32 32 H 1.09004 * 109.60862 * 190.83577 * 6 5 4 33 33 H 1.08996 * 109.75246 * 70.40245 * 6 5 4 34 34 H 1.09003 * 109.46429 * 59.99984 * 10 8 7 35 35 H 1.08996 * 109.46946 * 300.00381 * 10 8 7 36 36 H 1.08998 * 109.91561 * 26.49346 * 12 11 10 37 37 H 1.08995 * 109.92021 * 265.19694 * 12 11 10 38 38 H 1.09005 * 110.30370 * 117.69191 * 13 12 11 39 39 H 1.08999 * 110.31240 * 239.76169 * 13 12 11 40 40 H 0.96698 * 113.99872 * 61.45700 * 15 14 13 41 41 H 0.97003 * 119.99261 * 180.02562 * 19 18 16 42 42 H 1.09006 * 110.66151 * 318.71297 * 24 11 10 43 43 H 1.08998 * 110.66827 * 81.83762 * 24 11 10 44 44 H 1.09000 * 109.61157 * 64.26179 * 25 7 6 45 45 H 1.08996 * 109.61016 * 184.77826 * 25 7 6 46 46 H 1.08997 * 109.60919 * 244.49654 * 26 4 2 47 47 H 1.09004 * 109.60548 * 5.00852 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.4638 -2.4450 0.1134 6 6 2.0384 -3.2251 1.3023 7 7 3.5035 -3.2429 1.1883 8 6 4.1775 -4.4099 1.1888 9 8 3.5748 -5.4582 1.2833 10 6 5.6799 -4.4126 1.0706 11 7 6.1705 -5.7970 1.0948 12 6 5.7997 -6.5126 -0.1453 13 6 6.9463 -7.4903 -0.4627 14 6 7.9954 -7.2605 0.6493 15 8 7.8403 -8.2199 1.6970 16 6 9.3913 -7.3078 0.0834 17 1 10.0299 -6.4392 0.1482 18 6 9.8532 -8.4598 -0.5171 19 7 9.0756 -9.5175 -0.5956 20 14 11.5838 -8.5185 -1.2179 21 1 12.5269 -8.9831 -0.1693 22 1 11.6204 -9.4573 -2.3680 23 1 11.9795 -7.1617 -1.6737 24 6 7.6541 -5.8350 1.1561 25 6 4.2211 -1.9648 1.0801 26 6 3.6461 -1.1849 -0.1145 27 1 -0.3633 -0.0947 1.0232 28 1 -0.3634 0.9335 -0.4297 29 1 -0.3633 -0.8388 -0.5936 30 1 1.5971 -3.0221 -0.8017 31 1 0.4031 -2.2557 0.2783 32 1 1.6580 -4.2465 1.2878 33 1 1.7499 -2.7404 2.2349 34 1 6.1109 -3.8593 1.9051 35 1 5.9714 -3.9406 0.1324 36 1 5.6810 -5.8016 -0.9628 37 1 4.8725 -7.0647 0.0077 38 1 6.5851 -8.5184 -0.4354 39 1 7.3750 -7.2664 -1.4395 40 1 7.9650 -9.1358 1.4131 41 1 9.4008 -10.3281 -1.0177 42 1 8.0857 -5.0806 0.4981 43 1 8.0006 -5.6971 2.1803 44 1 4.0842 -1.3897 1.9959 45 1 5.2824 -2.1537 0.9189 46 1 3.9346 -1.6723 -1.0457 47 1 4.0265 -0.1635 -0.1000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647233518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:23 Heat of formation + Delta-G solvation = -91.511858 kcal Electronic energy + Delta-G solvation = -28608.124999 eV Core-core repulsion = 24598.617675 eV Total energy + Delta-G solvation = -4009.507324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78839 -39.63321 -38.11110 -37.00635 -34.60093 -34.39382 -32.17968 -32.09962 -30.79079 -29.89821 -28.02328 -27.83043 -26.31262 -24.39665 -23.78937 -22.81291 -20.70720 -19.96332 -19.58773 -18.63937 -17.57599 -17.01976 -16.63459 -16.42604 -16.00861 -15.97326 -15.73325 -15.07693 -14.86251 -14.50036 -14.16913 -14.13720 -13.89915 -13.67258 -13.46589 -13.20526 -12.73383 -12.58455 -12.50715 -12.42659 -12.21409 -12.04899 -11.78531 -11.69767 -11.59510 -11.25347 -11.16305 -11.02594 -10.63753 -10.43471 -10.33498 -10.22253 -9.78741 -9.61585 -9.53918 -9.14084 -8.62685 -8.57915 -8.06237 -7.72907 -6.19511 -4.28213 2.20502 2.39764 2.71102 2.87438 3.22596 3.29820 3.32037 4.08525 4.27516 4.34478 4.41887 4.52938 4.65459 4.70307 4.75835 4.84973 4.87920 4.97724 5.00897 5.08720 5.28265 5.30825 5.36113 5.41428 5.43919 5.48893 5.56071 5.72677 5.95839 5.98831 6.00786 6.20307 6.25194 6.49757 6.62484 6.92144 6.93775 7.07476 7.18426 7.39020 7.53247 7.56543 7.63568 7.73881 7.83188 8.18082 8.26783 8.74192 9.40738 9.58863 10.87509 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.002492 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.026058 B =11235.266116 C =11689.344890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.514 3.486 3 O -0.547 6.547 4 N -0.615 5.615 5 C 0.092 3.908 6 C 0.099 3.901 7 N -0.624 5.624 8 C 0.520 3.480 9 O -0.510 6.510 10 C 0.028 3.972 11 N -0.496 5.496 12 C 0.043 3.957 13 C -0.129 4.129 14 C 0.258 3.742 15 O -0.579 6.579 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.052 3.948 25 C 0.096 3.904 26 C 0.095 3.905 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.377 0.623 41 H 0.267 0.733 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 15.961 0.153 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.303 3.697 3 O -0.425 6.425 4 N -0.349 5.349 5 C -0.031 4.031 6 C -0.025 4.025 7 N -0.361 5.361 8 C 0.308 3.692 9 O -0.383 6.383 10 C -0.103 4.103 11 N -0.220 5.220 12 C -0.085 4.085 13 C -0.168 4.168 14 C 0.218 3.782 15 O -0.387 6.387 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.132 4.132 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.075 4.075 25 C -0.029 4.029 26 C -0.029 4.029 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.226 0.774 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.118 0.882 46 H 0.093 0.907 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.429 16.031 0.942 22.973 hybrid contribution 1.339 -0.133 -1.555 2.056 sum -15.090 15.898 -0.613 21.928 Atomic orbital electron populations 1.21956 0.91645 1.05147 1.04722 1.20866 0.90724 0.82895 0.75210 1.90721 1.70730 1.30999 1.50014 1.48123 1.07334 1.06269 1.73200 1.22242 0.97017 0.84256 0.99607 1.21889 0.80636 1.02618 0.97354 1.48120 1.06599 1.06152 1.75277 1.20846 0.90273 0.82669 0.75415 1.90698 1.69788 1.30661 1.47144 1.22197 0.91614 0.94450 1.02087 1.64599 1.11348 1.09051 1.37026 1.22936 1.00396 0.96609 0.88550 1.22952 0.94871 0.98315 1.00702 1.19328 0.91727 0.83990 0.83191 1.86147 1.94317 1.19810 1.38421 1.21578 0.99213 0.99091 1.37764 0.92127 1.25006 0.97759 0.95464 0.94947 1.69749 1.36128 1.02939 1.44355 0.86487 0.84289 0.77958 0.78605 1.20440 1.21136 1.19883 1.23272 0.84872 0.98675 1.00685 1.22209 0.97451 0.84551 0.98653 1.22107 0.79736 1.02668 0.98342 0.88778 0.88827 0.89759 0.90488 0.88306 0.87542 0.91212 0.88388 0.92317 0.96005 0.90828 0.91443 0.92164 0.77357 0.92356 0.93578 0.90710 0.90704 0.88224 0.90702 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 9.13 36.01 0.33 -0.52 16 2 C 0.51 4.61 7.80 -10.99 -0.09 4.53 16 3 O -0.55 -7.18 16.51 5.56 0.09 -7.09 16 4 N -0.61 -4.94 2.95 -172.21 -0.51 -5.45 16 5 C 0.09 0.59 6.34 -3.60 -0.02 0.57 16 6 C 0.10 0.84 6.59 -3.60 -0.02 0.82 16 7 N -0.62 -6.66 2.94 -172.21 -0.51 -7.16 16 8 C 0.52 7.65 7.50 -10.99 -0.08 7.57 16 9 O -0.51 -9.52 14.48 5.55 0.08 -9.44 16 10 C 0.03 0.42 3.59 -4.97 -0.02 0.40 16 11 N -0.50 -9.89 4.96 -231.79 -1.15 -11.04 16 12 C 0.04 0.88 5.76 -2.76 -0.02 0.86 16 13 C -0.13 -3.06 5.26 -25.37 -0.13 -3.20 16 14 C 0.26 6.46 0.95 -89.83 -0.09 6.38 16 15 O -0.58 -15.58 13.09 -35.23 -0.46 -16.04 16 16 C -0.54 -14.29 8.14 -34.44 -0.28 -14.57 16 17 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 18 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 19 N -0.89 -23.96 11.02 55.43 0.61 -23.35 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.05 1.11 5.69 -1.81 -0.01 1.10 16 25 C 0.10 0.79 6.54 -3.36 -0.02 0.77 16 26 C 0.09 0.78 6.62 -3.37 -0.02 0.76 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.25 6.74 -51.93 -0.35 -0.10 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.35 5.78 -51.93 -0.30 0.05 16 32 H 0.11 1.05 6.99 -51.93 -0.36 0.68 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.26 7.87 -51.93 -0.41 0.85 16 35 H 0.06 0.78 7.40 -51.93 -0.38 0.39 16 36 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 37 H 0.07 1.59 7.39 -51.93 -0.38 1.21 16 38 H 0.07 1.70 7.99 -51.93 -0.41 1.28 16 39 H 0.06 1.46 7.84 -51.93 -0.41 1.05 16 40 H 0.38 10.20 7.48 45.56 0.34 10.54 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.05 0.92 7.92 -51.93 -0.41 0.50 16 43 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.73 5.91 -51.93 -0.31 0.42 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.92 6.99 -51.93 -0.36 0.56 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -33.76 368.94 -8.52 -42.28 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.65 Total: 9.01 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.57 Total: 7.23 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -1.55 Total: -47.00 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.29 Total: -32.57 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.76 -8.52 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647233518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.233 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds