Wall clock time and date at job start Fri Apr 10 2020 18:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99642 * 2 1 4 4 N 1.34774 * 120.00307 * 180.02562 * 2 1 3 5 5 C 1.46971 * 120.59129 * 354.80747 * 4 2 1 6 6 C 1.53365 * 108.63550 * 235.25219 * 5 4 2 7 7 N 1.46964 * 108.63422 * 310.57373 * 6 5 4 8 8 C 1.34772 * 120.59805 * 235.20369 * 7 6 5 9 9 O 1.21283 * 119.99866 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00525 * 179.97438 * 8 7 6 11 11 N 1.46899 * 109.47304 * 180.02562 * 10 8 7 12 12 C 1.47897 * 111.00073 * 69.87380 * 11 10 8 13 13 C 1.53994 * 107.05607 * 145.84087 * 12 11 10 14 14 C 1.54595 * 105.22749 * 358.72699 * 13 12 11 15 15 O 1.42903 * 110.72160 * 96.44744 * 14 13 12 16 16 C 1.50698 * 110.72413 * 219.72896 * 14 13 12 17 17 H 1.08001 * 119.99265 * 118.54758 * 16 14 13 18 18 C 1.37878 * 120.00192 * 298.54809 * 16 14 13 19 19 N 1.31515 * 119.99704 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99944 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47095 * 89.99622 * 20 18 16 22 22 H 1.48504 * 109.46820 * 210.00282 * 20 18 16 23 23 H 1.48500 * 109.46946 * 329.99735 * 20 18 16 24 24 C 1.48534 * 110.99920 * 187.27389 * 11 10 8 25 25 C 1.46968 * 118.81111 * 55.48262 * 7 6 5 26 26 C 1.46964 * 120.59833 * 174.83209 * 4 2 1 27 27 H 1.08996 * 109.47286 * 264.71147 * 1 2 3 28 28 H 1.09000 * 109.47524 * 24.71510 * 1 2 3 29 29 H 1.08997 * 109.47242 * 144.71202 * 1 2 3 30 30 H 1.09006 * 109.60873 * 115.50390 * 5 4 2 31 31 H 1.09001 * 109.61042 * 354.99557 * 5 4 2 32 32 H 1.09004 * 109.60862 * 190.83577 * 6 5 4 33 33 H 1.08996 * 109.75246 * 70.40245 * 6 5 4 34 34 H 1.09003 * 109.46429 * 59.99984 * 10 8 7 35 35 H 1.08996 * 109.46946 * 300.00381 * 10 8 7 36 36 H 1.08998 * 109.91561 * 26.49346 * 12 11 10 37 37 H 1.08995 * 109.92021 * 265.19694 * 12 11 10 38 38 H 1.09005 * 110.30370 * 117.69191 * 13 12 11 39 39 H 1.08999 * 110.31240 * 239.76169 * 13 12 11 40 40 H 0.96698 * 113.99872 * 61.45700 * 15 14 13 41 41 H 0.97003 * 119.99261 * 180.02562 * 19 18 16 42 42 H 1.09006 * 110.66151 * 318.71297 * 24 11 10 43 43 H 1.08998 * 110.66827 * 81.83762 * 24 11 10 44 44 H 1.09000 * 109.61157 * 64.26179 * 25 7 6 45 45 H 1.08996 * 109.61016 * 184.77826 * 25 7 6 46 46 H 1.08997 * 109.60919 * 244.49654 * 26 4 2 47 47 H 1.09004 * 109.60548 * 5.00852 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.4638 -2.4450 0.1134 6 6 2.0384 -3.2251 1.3023 7 7 3.5035 -3.2429 1.1883 8 6 4.1775 -4.4099 1.1888 9 8 3.5748 -5.4582 1.2833 10 6 5.6799 -4.4126 1.0706 11 7 6.1705 -5.7970 1.0948 12 6 5.7997 -6.5126 -0.1453 13 6 6.9463 -7.4903 -0.4627 14 6 7.9954 -7.2605 0.6493 15 8 7.8403 -8.2199 1.6970 16 6 9.3913 -7.3078 0.0834 17 1 10.0299 -6.4392 0.1482 18 6 9.8532 -8.4598 -0.5171 19 7 9.0756 -9.5175 -0.5956 20 14 11.5838 -8.5185 -1.2179 21 1 12.5269 -8.9831 -0.1693 22 1 11.6204 -9.4573 -2.3680 23 1 11.9795 -7.1617 -1.6737 24 6 7.6541 -5.8350 1.1561 25 6 4.2211 -1.9648 1.0801 26 6 3.6461 -1.1849 -0.1145 27 1 -0.3633 -0.0947 1.0232 28 1 -0.3634 0.9335 -0.4297 29 1 -0.3633 -0.8388 -0.5936 30 1 1.5971 -3.0221 -0.8017 31 1 0.4031 -2.2557 0.2783 32 1 1.6580 -4.2465 1.2878 33 1 1.7499 -2.7404 2.2349 34 1 6.1109 -3.8593 1.9051 35 1 5.9714 -3.9406 0.1324 36 1 5.6810 -5.8016 -0.9628 37 1 4.8725 -7.0647 0.0077 38 1 6.5851 -8.5184 -0.4354 39 1 7.3750 -7.2664 -1.4395 40 1 7.9650 -9.1358 1.4131 41 1 9.4008 -10.3281 -1.0177 42 1 8.0857 -5.0806 0.4981 43 1 8.0006 -5.6971 2.1803 44 1 4.0842 -1.3897 1.9959 45 1 5.2824 -2.1537 0.9189 46 1 3.9346 -1.6723 -1.0457 47 1 4.0265 -0.1635 -0.1000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647233518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:22 Heat of formation + Delta-G solvation = -118.376865 kcal Electronic energy + Delta-G solvation = -28609.289953 eV Core-core repulsion = 24598.617675 eV Total energy + Delta-G solvation = -4010.672278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62527 -40.65790 -39.63749 -37.98862 -36.39248 -35.24215 -34.15253 -32.89057 -32.08756 -30.75042 -29.80263 -28.75175 -27.63533 -25.94348 -24.67494 -23.65538 -22.08679 -21.43765 -20.99548 -19.50230 -18.95170 -18.42786 -17.48253 -17.36004 -17.15823 -16.86773 -16.75236 -16.60085 -16.32336 -15.82757 -15.67823 -15.02244 -14.99176 -14.67196 -14.61048 -14.21434 -14.07881 -13.88963 -13.69903 -13.31312 -13.15477 -13.12625 -12.99145 -12.85623 -12.75246 -12.70799 -12.46419 -12.39865 -12.37490 -12.24814 -12.15304 -11.64999 -11.11085 -10.94451 -10.79166 -10.56815 -10.34305 -10.07785 -9.42791 -9.23356 -8.19274 -6.35648 1.42214 1.44237 1.51643 1.53221 1.64788 1.66639 2.11799 2.39819 3.04530 3.13297 3.43763 3.63924 3.78655 3.84292 3.95775 4.08658 4.11621 4.13291 4.21207 4.29147 4.33845 4.38214 4.39716 4.47851 4.49542 4.63155 4.67000 4.70690 4.73813 4.77858 4.87719 4.93622 5.09692 5.12143 5.24192 5.34447 5.45335 5.48137 5.57461 5.75251 5.89914 6.04044 6.23205 6.29643 6.37739 6.71480 7.09258 7.18579 7.36313 7.48588 8.86429 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.002492 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.026058 B =11235.266116 C =11689.344890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.596 6.596 4 N -0.614 5.614 5 C 0.099 3.901 6 C 0.094 3.906 7 N -0.615 5.615 8 C 0.520 3.480 9 O -0.559 6.559 10 C 0.025 3.975 11 N -0.514 5.514 12 C 0.058 3.942 13 C -0.120 4.120 14 C 0.237 3.763 15 O -0.591 6.591 16 C -0.558 4.558 17 H 0.061 0.939 18 C 0.027 3.973 19 N -0.914 5.914 20 Si 0.961 3.039 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.063 3.937 25 C 0.096 3.904 26 C 0.094 3.906 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.370 0.630 41 H 0.267 0.733 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.742 17.839 -0.118 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.477 6.477 4 N -0.348 5.348 5 C -0.024 4.024 6 C -0.029 4.029 7 N -0.350 5.350 8 C 0.308 3.692 9 O -0.436 6.436 10 C -0.106 4.106 11 N -0.239 5.239 12 C -0.070 4.070 13 C -0.159 4.159 14 C 0.197 3.803 15 O -0.399 6.399 16 C -0.596 4.596 17 H 0.079 0.921 18 C -0.174 4.174 19 N -0.553 5.553 20 Si 0.787 3.213 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.065 4.065 25 C -0.027 4.027 26 C -0.029 4.029 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.130 0.870 46 H 0.095 0.905 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.133 17.950 0.673 24.823 hybrid contribution 1.509 -0.679 -1.445 2.196 sum -15.624 17.271 -0.772 23.303 Atomic orbital electron populations 1.21997 0.88307 1.06172 1.06403 1.21621 0.92335 0.82186 0.73932 1.90700 1.72003 1.32677 1.52367 1.48241 1.07332 1.06749 1.72465 1.22314 0.98593 0.83030 0.98432 1.22070 0.79229 1.02469 0.99114 1.48124 1.07683 1.05798 1.73417 1.20783 0.90179 0.83060 0.75155 1.90689 1.70525 1.32525 1.49855 1.22329 0.92039 0.91858 1.04335 1.64445 1.10341 1.12413 1.36670 1.22690 0.98191 0.96351 0.89743 1.22752 0.95692 0.97701 0.99781 1.19667 0.91682 0.85500 0.83448 1.86142 1.94402 1.19766 1.39544 1.21865 1.00153 0.99387 1.38231 0.92072 1.25749 1.01259 0.95172 0.95223 1.69856 1.37537 1.03267 1.44626 0.85512 0.79871 0.78143 0.77791 1.20381 1.20882 1.19094 1.23109 0.86044 0.96585 1.00718 1.22357 0.97934 0.83288 0.99109 1.22068 0.80274 1.02219 0.98354 0.86832 0.88960 0.87385 0.90703 0.84808 0.88891 0.89795 0.85988 0.89898 0.93942 0.92259 0.94071 0.93350 0.78138 0.92324 0.91900 0.90889 0.89826 0.87004 0.90515 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.13 71.24 0.65 -0.46 16 2 C 0.51 8.09 7.80 87.66 0.68 8.77 16 3 O -0.60 -15.19 16.51 -3.04 -0.05 -15.24 16 4 N -0.61 -8.41 2.95 -817.13 -2.41 -10.82 16 5 C 0.10 0.97 6.34 86.41 0.55 1.52 16 6 C 0.09 1.40 6.59 86.41 0.57 1.97 16 7 N -0.62 -11.79 2.94 -817.16 -2.40 -14.20 16 8 C 0.52 14.50 7.50 87.66 0.66 15.15 16 9 O -0.56 -20.70 14.48 -3.04 -0.04 -20.75 16 10 C 0.03 0.70 3.59 85.56 0.31 1.00 16 11 N -0.51 -19.98 4.96 -887.25 -4.40 -24.38 16 12 C 0.06 2.38 5.76 86.45 0.50 2.88 16 13 C -0.12 -5.80 5.26 31.47 0.17 -5.63 16 14 C 0.24 11.97 0.95 -10.28 -0.01 11.96 16 15 O -0.59 -32.57 13.09 -148.98 -1.95 -34.52 16 16 C -0.56 -29.68 8.14 25.60 0.21 -29.47 16 17 H 0.06 3.16 7.78 -2.91 -0.02 3.14 16 18 C 0.03 1.40 5.28 84.65 0.45 1.85 16 19 N -0.91 -49.83 11.02 21.45 0.24 -49.59 16 20 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.06 2.61 5.69 86.70 0.49 3.10 16 25 C 0.10 1.34 6.54 86.56 0.57 1.91 16 26 C 0.09 1.37 6.62 86.57 0.57 1.95 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.11 0.19 6.74 -2.39 -0.02 0.18 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.13 0.39 5.78 -2.39 -0.01 0.37 16 32 H 0.09 1.72 6.99 -2.38 -0.02 1.70 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.12 2.76 7.87 -2.39 -0.02 2.74 16 35 H 0.08 1.91 7.40 -2.39 -0.02 1.90 16 36 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 37 H 0.06 2.61 7.39 -2.39 -0.02 2.59 16 38 H 0.04 2.15 7.99 -2.38 -0.02 2.13 16 39 H 0.05 2.38 7.84 -2.39 -0.02 2.36 16 40 H 0.37 20.82 7.48 -74.06 -0.55 20.27 16 41 H 0.27 13.92 8.31 -92.71 -0.77 13.14 16 42 H 0.06 2.38 7.92 -2.38 -0.02 2.36 16 43 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 1.29 5.91 -2.39 -0.01 1.28 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.61 6.99 -2.38 -0.02 1.60 16 Total: -1.00 -74.87 368.94 -2.21 -77.08 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.43 Total: 32.00 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 6.36 Total: 16.49 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -8.98 Total: -98.99 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -2.04 Total: -70.51 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -74.87 -2.21 -77.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647233518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.299 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds