Wall clock time and date at job start Fri Apr 10 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99858 * 2 1 4 4 N 1.34769 * 120.00018 * 179.97438 * 2 1 3 5 5 C 1.46967 * 120.59676 * 4.29861 * 4 2 1 6 6 C 1.53365 * 108.63574 * 235.25017 * 5 4 2 7 7 N 1.46961 * 108.63447 * 310.57173 * 6 5 4 8 8 C 1.34782 * 120.59782 * 235.20223 * 7 6 5 9 9 O 1.21283 * 119.99685 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00366 * 179.97438 * 8 7 6 11 11 N 1.46902 * 109.47274 * 187.19168 * 10 8 7 12 12 C 1.47905 * 110.99824 * 177.55109 * 11 10 8 13 13 C 1.53991 * 107.05161 * 214.15474 * 12 11 10 14 14 C 1.54595 * 105.14451 * 1.22445 * 13 12 11 15 15 O 1.42899 * 110.72622 * 263.41927 * 14 13 12 16 16 C 1.50707 * 110.72551 * 140.31219 * 14 13 12 17 17 H 1.07996 * 119.99990 * 241.45817 * 16 14 13 18 18 C 1.37880 * 119.99781 * 61.45702 * 16 14 13 19 19 N 1.31514 * 119.99887 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99933 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47396 * 59.99648 * 20 18 16 22 22 H 1.48501 * 109.46870 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47076 * 299.99531 * 20 18 16 24 24 C 1.48534 * 110.99862 * 60.15236 * 11 10 8 25 25 C 1.46961 * 118.81092 * 55.48092 * 7 6 5 26 26 C 1.46961 * 120.59470 * 184.32027 * 4 2 1 27 27 H 1.08997 * 109.47377 * 264.89357 * 1 2 3 28 28 H 1.09001 * 109.47259 * 24.89654 * 1 2 3 29 29 H 1.08999 * 109.47362 * 144.89092 * 1 2 3 30 30 H 1.08997 * 109.61504 * 115.49975 * 5 4 2 31 31 H 1.09004 * 109.74545 * 355.07433 * 5 4 2 32 32 H 1.09006 * 109.61071 * 190.82846 * 6 5 4 33 33 H 1.09002 * 109.75477 * 70.39988 * 6 5 4 34 34 H 1.09004 * 109.47054 * 67.19234 * 10 8 7 35 35 H 1.08999 * 109.47475 * 307.19632 * 10 8 7 36 36 H 1.09001 * 109.91445 * 333.50707 * 12 11 10 37 37 H 1.08999 * 109.91426 * 94.80461 * 12 11 10 38 38 H 1.09008 * 110.30841 * 120.14406 * 13 12 11 39 39 H 1.09000 * 110.31177 * 242.20792 * 13 12 11 40 40 H 0.96698 * 113.99870 * 298.54794 * 15 14 13 41 41 H 0.97005 * 120.00266 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.66289 * 278.15504 * 24 11 10 43 43 H 1.08996 * 110.66584 * 41.28809 * 24 11 10 44 44 H 1.08998 * 109.61183 * 64.26871 * 25 7 6 45 45 H 1.09004 * 109.60956 * 184.77907 * 25 7 6 46 46 H 1.08996 * 109.61087 * 244.49684 * 26 4 2 47 47 H 1.09001 * 109.61016 * 4.83516 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 1.4624 -2.4458 -0.0937 6 6 1.8659 -3.3236 1.0973 7 7 3.3323 -3.3406 1.1926 8 6 4.0062 -4.5078 1.1941 9 8 3.4024 -5.5567 1.1159 10 6 5.5100 -4.5096 1.2918 11 7 6.0115 -5.8772 1.1010 12 6 7.4899 -5.9087 1.1323 13 6 7.9392 -7.0018 0.1451 14 6 6.6318 -7.5584 -0.4637 15 8 6.2184 -8.7420 0.2220 16 6 6.8023 -7.8296 -1.9363 17 1 6.1933 -7.3033 -2.6564 18 6 7.7357 -8.7497 -2.3643 19 7 8.4776 -9.3902 -1.4874 20 14 7.9476 -9.0854 -4.1896 21 1 8.3371 -7.8307 -4.8817 22 1 9.0071 -10.1074 -4.3852 23 1 6.6676 -9.5846 -4.7529 24 6 5.6233 -6.4053 -0.2319 25 6 4.0504 -2.0623 1.2926 26 6 3.6473 -1.1841 0.0958 27 1 -0.3634 -0.0915 1.0235 28 1 -0.3634 0.9322 -0.4326 29 1 -0.3634 -0.8407 -0.5910 30 1 1.7282 -2.9471 -1.0243 31 1 0.3874 -2.2669 -0.0687 32 1 1.4974 -4.3382 0.9455 33 1 1.4444 -2.9149 2.0157 34 1 5.8107 -4.1462 2.2745 35 1 5.9250 -3.8596 0.5216 36 1 7.8885 -4.9424 0.8231 37 1 7.8349 -6.1514 2.1373 38 1 8.5670 -6.5717 -0.6355 39 1 8.4782 -7.7892 0.6720 40 1 6.8542 -9.4688 0.1703 41 1 9.1347 -10.0373 -1.7884 42 1 4.6020 -6.7855 -0.2123 43 1 5.7344 -5.6373 -0.9973 44 1 3.7810 -1.5631 2.2233 45 1 5.1251 -2.2436 1.2696 46 1 4.0687 -1.5956 -0.8213 47 1 4.0160 -0.1692 0.2446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647233519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:26 Heat of formation + Delta-G solvation = -88.472943 kcal Electronic energy + Delta-G solvation = -28881.369638 eV Core-core repulsion = 24871.994091 eV Total energy + Delta-G solvation = -4009.375547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76536 -39.63377 -38.08649 -36.96240 -34.59810 -34.35653 -32.16112 -32.06521 -30.76906 -29.86672 -27.98312 -27.82372 -26.21085 -24.47924 -23.81590 -22.74715 -20.59716 -20.00790 -19.54476 -18.62846 -17.57651 -16.98833 -16.66059 -16.40716 -15.93780 -15.92307 -15.60312 -15.02972 -14.84317 -14.51891 -14.16725 -14.06800 -14.03780 -13.65132 -13.46911 -13.14401 -12.77050 -12.60150 -12.49841 -12.27641 -12.10260 -11.95225 -11.78730 -11.64991 -11.63110 -11.28883 -11.18338 -10.88388 -10.63272 -10.48920 -10.33179 -10.18248 -9.77610 -9.56830 -9.48178 -9.05503 -8.59021 -8.53262 -8.04203 -7.72706 -6.17160 -4.25266 2.24244 2.43518 2.73828 2.90718 3.25093 3.30134 3.33154 4.12474 4.30722 4.36104 4.44904 4.55260 4.65539 4.71847 4.78973 4.88211 4.92219 4.98770 5.05729 5.10765 5.29314 5.35122 5.39750 5.42674 5.46453 5.53536 5.60008 5.71943 5.92835 6.01536 6.02784 6.16246 6.27015 6.47353 6.68741 6.96131 6.97673 7.12088 7.21301 7.39505 7.54702 7.57096 7.65008 7.77548 7.85473 8.23713 8.29973 8.76868 9.43434 9.64263 10.89790 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002864 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.339167 B = 9773.946468 C =10281.580000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.514 3.486 3 O -0.548 6.548 4 N -0.614 5.614 5 C 0.090 3.910 6 C 0.099 3.901 7 N -0.624 5.624 8 C 0.517 3.483 9 O -0.503 6.503 10 C 0.029 3.971 11 N -0.497 5.497 12 C 0.036 3.964 13 C -0.129 4.129 14 C 0.257 3.743 15 O -0.577 6.577 16 C -0.537 4.537 17 H 0.058 0.942 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.054 3.946 25 C 0.096 3.904 26 C 0.094 3.906 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.375 0.625 41 H 0.267 0.733 42 H 0.089 0.911 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 16.809 5.373 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.303 3.697 3 O -0.426 6.426 4 N -0.348 5.348 5 C -0.034 4.034 6 C -0.025 4.025 7 N -0.361 5.361 8 C 0.305 3.695 9 O -0.376 6.376 10 C -0.102 4.102 11 N -0.222 5.222 12 C -0.091 4.091 13 C -0.168 4.168 14 C 0.216 3.784 15 O -0.384 6.384 16 C -0.575 4.575 17 H 0.077 0.923 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.073 4.073 25 C -0.028 4.028 26 C -0.029 4.029 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.224 0.776 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.975 16.691 5.905 21.374 hybrid contribution 1.127 0.080 -1.753 2.086 sum -10.848 16.771 4.152 20.401 Atomic orbital electron populations 1.21976 0.91676 1.05129 1.04784 1.20851 0.90720 0.82894 0.75232 1.90715 1.70737 1.31011 1.50129 1.48113 1.07207 1.06243 1.73241 1.22287 0.97667 0.83769 0.99647 1.21895 0.80859 1.02157 0.97570 1.48112 1.06563 1.06020 1.75443 1.20770 0.90285 0.82773 0.75666 1.90736 1.69716 1.30394 1.46723 1.22210 0.91524 0.93982 1.02520 1.64703 1.09360 1.15296 1.32811 1.22966 0.87087 0.98539 1.00550 1.22941 1.00683 0.96556 0.96627 1.19316 0.87059 0.82464 0.89533 1.86184 1.50053 1.24989 1.77186 1.21568 1.20140 1.23719 0.92088 0.92336 1.24993 0.94821 0.95186 0.98126 1.69729 1.23255 1.26596 1.33803 0.86556 0.77890 0.77999 0.84952 1.20259 1.21153 1.20062 1.23277 1.01745 0.96161 0.86094 1.22203 0.98056 0.84151 0.98397 1.22100 0.80075 1.02036 0.98679 0.88714 0.88875 0.89681 0.90326 0.88158 0.87466 0.91220 0.88459 0.92608 0.95247 0.91559 0.92034 0.91352 0.77583 0.92347 0.89251 0.94530 0.90793 0.88272 0.90677 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 9.42 36.01 0.34 -0.60 16 2 C 0.51 4.86 7.80 -10.99 -0.09 4.77 16 3 O -0.55 -7.43 16.52 5.56 0.09 -7.33 16 4 N -0.61 -5.29 2.95 -172.22 -0.51 -5.80 16 5 C 0.09 0.64 6.43 -3.60 -0.02 0.62 16 6 C 0.10 0.89 6.59 -3.60 -0.02 0.87 16 7 N -0.62 -6.89 2.94 -172.22 -0.51 -7.39 16 8 C 0.52 7.88 7.32 -10.99 -0.08 7.80 16 9 O -0.50 -9.88 13.82 5.55 0.08 -9.80 16 10 C 0.03 0.44 3.72 -4.98 -0.02 0.42 16 11 N -0.50 -9.91 5.09 -231.90 -1.18 -11.09 16 12 C 0.04 0.69 6.70 -2.75 -0.02 0.67 16 13 C -0.13 -2.99 5.26 -25.38 -0.13 -3.13 16 14 C 0.26 6.58 0.95 -89.91 -0.09 6.49 16 15 O -0.58 -15.89 13.10 -35.23 -0.46 -16.35 16 16 C -0.54 -14.64 8.14 -34.44 -0.28 -14.92 16 17 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 18 C 0.07 1.90 5.28 -17.82 -0.09 1.81 16 19 N -0.89 -24.12 11.00 55.43 0.61 -23.51 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 C 0.05 1.24 4.76 -1.90 -0.01 1.23 16 25 C 0.10 0.80 6.53 -3.37 -0.02 0.78 16 26 C 0.09 0.83 6.60 -3.37 -0.02 0.81 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.29 6.26 -51.93 -0.33 -0.03 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.42 5.48 -51.93 -0.28 0.14 16 32 H 0.11 1.13 6.99 -51.93 -0.36 0.77 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.21 8.13 -51.93 -0.42 0.78 16 35 H 0.06 0.74 7.20 -51.93 -0.37 0.36 16 36 H 0.03 0.49 7.70 -51.93 -0.40 0.09 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.47 7.84 -51.92 -0.41 1.06 16 39 H 0.07 1.66 7.99 -51.93 -0.41 1.25 16 40 H 0.38 10.27 7.46 45.56 0.34 10.61 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.09 2.24 6.52 -51.93 -0.34 1.90 16 43 H 0.04 0.80 7.90 -51.93 -0.41 0.39 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.73 5.86 -51.93 -0.30 0.42 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.95 7.01 -51.93 -0.36 0.59 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -34.35 367.18 -8.49 -42.84 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.57 Total: 9.50 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.56 Total: 7.61 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -1.58 Total: -47.79 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.29 Total: -33.48 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.35 -8.49 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647233519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.628 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds