Wall clock time and date at job start Fri Apr 10 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99858 * 2 1 4 4 N 1.34769 * 120.00018 * 179.97438 * 2 1 3 5 5 C 1.46967 * 120.59676 * 4.29861 * 4 2 1 6 6 C 1.53365 * 108.63574 * 235.25017 * 5 4 2 7 7 N 1.46961 * 108.63447 * 310.57173 * 6 5 4 8 8 C 1.34782 * 120.59782 * 235.20223 * 7 6 5 9 9 O 1.21283 * 119.99685 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00366 * 179.97438 * 8 7 6 11 11 N 1.46902 * 109.47274 * 187.19168 * 10 8 7 12 12 C 1.47905 * 110.99824 * 177.55109 * 11 10 8 13 13 C 1.53991 * 107.05161 * 214.15474 * 12 11 10 14 14 C 1.54595 * 105.14451 * 1.22445 * 13 12 11 15 15 O 1.42899 * 110.72622 * 263.41927 * 14 13 12 16 16 C 1.50707 * 110.72551 * 140.31219 * 14 13 12 17 17 H 1.07996 * 119.99990 * 241.45817 * 16 14 13 18 18 C 1.37880 * 119.99781 * 61.45702 * 16 14 13 19 19 N 1.31514 * 119.99887 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99933 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47396 * 59.99648 * 20 18 16 22 22 H 1.48501 * 109.46870 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47076 * 299.99531 * 20 18 16 24 24 C 1.48534 * 110.99862 * 60.15236 * 11 10 8 25 25 C 1.46961 * 118.81092 * 55.48092 * 7 6 5 26 26 C 1.46961 * 120.59470 * 184.32027 * 4 2 1 27 27 H 1.08997 * 109.47377 * 264.89357 * 1 2 3 28 28 H 1.09001 * 109.47259 * 24.89654 * 1 2 3 29 29 H 1.08999 * 109.47362 * 144.89092 * 1 2 3 30 30 H 1.08997 * 109.61504 * 115.49975 * 5 4 2 31 31 H 1.09004 * 109.74545 * 355.07433 * 5 4 2 32 32 H 1.09006 * 109.61071 * 190.82846 * 6 5 4 33 33 H 1.09002 * 109.75477 * 70.39988 * 6 5 4 34 34 H 1.09004 * 109.47054 * 67.19234 * 10 8 7 35 35 H 1.08999 * 109.47475 * 307.19632 * 10 8 7 36 36 H 1.09001 * 109.91445 * 333.50707 * 12 11 10 37 37 H 1.08999 * 109.91426 * 94.80461 * 12 11 10 38 38 H 1.09008 * 110.30841 * 120.14406 * 13 12 11 39 39 H 1.09000 * 110.31177 * 242.20792 * 13 12 11 40 40 H 0.96698 * 113.99870 * 298.54794 * 15 14 13 41 41 H 0.97005 * 120.00266 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.66289 * 278.15504 * 24 11 10 43 43 H 1.08996 * 110.66584 * 41.28809 * 24 11 10 44 44 H 1.08998 * 109.61183 * 64.26871 * 25 7 6 45 45 H 1.09004 * 109.60956 * 184.77907 * 25 7 6 46 46 H 1.08996 * 109.61087 * 244.49684 * 26 4 2 47 47 H 1.09001 * 109.61016 * 4.83516 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 1.4624 -2.4458 -0.0937 6 6 1.8659 -3.3236 1.0973 7 7 3.3323 -3.3406 1.1926 8 6 4.0062 -4.5078 1.1941 9 8 3.4024 -5.5567 1.1159 10 6 5.5100 -4.5096 1.2918 11 7 6.0115 -5.8772 1.1010 12 6 7.4899 -5.9087 1.1323 13 6 7.9392 -7.0018 0.1451 14 6 6.6318 -7.5584 -0.4637 15 8 6.2184 -8.7420 0.2220 16 6 6.8023 -7.8296 -1.9363 17 1 6.1933 -7.3033 -2.6564 18 6 7.7357 -8.7497 -2.3643 19 7 8.4776 -9.3902 -1.4874 20 14 7.9476 -9.0854 -4.1896 21 1 8.3371 -7.8307 -4.8817 22 1 9.0071 -10.1074 -4.3852 23 1 6.6676 -9.5846 -4.7529 24 6 5.6233 -6.4053 -0.2319 25 6 4.0504 -2.0623 1.2926 26 6 3.6473 -1.1841 0.0958 27 1 -0.3634 -0.0915 1.0235 28 1 -0.3634 0.9322 -0.4326 29 1 -0.3634 -0.8407 -0.5910 30 1 1.7282 -2.9471 -1.0243 31 1 0.3874 -2.2669 -0.0687 32 1 1.4974 -4.3382 0.9455 33 1 1.4444 -2.9149 2.0157 34 1 5.8107 -4.1462 2.2745 35 1 5.9250 -3.8596 0.5216 36 1 7.8885 -4.9424 0.8231 37 1 7.8349 -6.1514 2.1373 38 1 8.5670 -6.5717 -0.6355 39 1 8.4782 -7.7892 0.6720 40 1 6.8542 -9.4688 0.1703 41 1 9.1347 -10.0373 -1.7884 42 1 4.6020 -6.7855 -0.2123 43 1 5.7344 -5.6373 -0.9973 44 1 3.7810 -1.5631 2.2233 45 1 5.1251 -2.2436 1.2696 46 1 4.0687 -1.5956 -0.8213 47 1 4.0160 -0.1692 0.2446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647233519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:25 Heat of formation + Delta-G solvation = -116.329673 kcal Electronic energy + Delta-G solvation = -28882.577596 eV Core-core repulsion = 24871.994091 eV Total energy + Delta-G solvation = -4010.583505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65046 -40.69192 -39.60693 -37.99618 -36.41383 -35.25175 -34.16361 -32.91338 -32.07755 -30.73438 -29.79065 -28.74284 -27.57552 -26.10940 -24.68443 -23.61343 -21.97464 -21.49497 -21.00162 -19.52480 -18.96474 -18.48046 -17.60034 -17.31368 -16.95081 -16.79855 -16.76348 -16.60911 -16.48194 -15.79464 -15.71620 -15.11013 -14.93881 -14.77955 -14.61361 -14.16427 -14.02968 -13.84403 -13.70982 -13.34761 -13.24112 -13.13263 -13.05792 -12.92104 -12.68741 -12.56429 -12.50657 -12.40202 -12.35363 -12.31265 -12.11257 -11.67219 -11.07992 -10.93566 -10.72212 -10.57331 -10.34245 -10.08127 -9.43244 -9.22481 -8.20828 -6.37085 1.40090 1.42040 1.49488 1.50925 1.64039 1.67419 2.11528 2.38021 3.03149 3.14833 3.42451 3.63280 3.77955 3.82904 3.97892 4.03202 4.09873 4.17152 4.20858 4.28295 4.35553 4.39367 4.41971 4.48298 4.49265 4.61669 4.66461 4.71198 4.75153 4.77499 4.91900 4.93459 5.10057 5.14993 5.26417 5.33681 5.46566 5.48758 5.58761 5.76668 5.89185 6.03952 6.23618 6.30804 6.38552 6.68151 7.08125 7.19597 7.34559 7.51514 8.84458 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002864 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.339167 B = 9773.946468 C =10281.580000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.596 6.596 4 N -0.614 5.614 5 C 0.096 3.904 6 C 0.095 3.905 7 N -0.615 5.615 8 C 0.514 3.486 9 O -0.559 6.559 10 C 0.027 3.973 11 N -0.515 5.515 12 C 0.045 3.955 13 C -0.120 4.120 14 C 0.235 3.765 15 O -0.591 6.591 16 C -0.564 4.564 17 H 0.050 0.950 18 C 0.031 3.969 19 N -0.910 5.910 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.277 1.277 24 C 0.072 3.928 25 C 0.098 3.902 26 C 0.093 3.907 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.370 0.630 41 H 0.269 0.731 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.069 0.931 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 18.681 5.603 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.477 6.477 4 N -0.347 5.347 5 C -0.026 4.026 6 C -0.028 4.028 7 N -0.350 5.350 8 C 0.302 3.698 9 O -0.436 6.436 10 C -0.104 4.104 11 N -0.240 5.240 12 C -0.082 4.082 13 C -0.159 4.159 14 C 0.196 3.804 15 O -0.399 6.399 16 C -0.602 4.602 17 H 0.068 0.932 18 C -0.170 4.170 19 N -0.549 5.549 20 Si 0.784 3.216 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.056 4.056 25 C -0.025 4.025 26 C -0.031 4.031 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.218 0.782 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.132 0.868 46 H 0.088 0.912 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.484 18.606 6.147 23.234 hybrid contribution 1.246 -0.464 -1.801 2.239 sum -11.238 18.143 4.346 21.779 Atomic orbital electron populations 1.22016 0.88316 1.06144 1.06480 1.21602 0.92334 0.82148 0.73946 1.90695 1.71996 1.32614 1.52415 1.48228 1.07232 1.06660 1.72576 1.22336 0.99554 0.82571 0.98183 1.22062 0.79612 1.01789 0.99371 1.48139 1.07587 1.05792 1.73529 1.20879 0.90541 0.83091 0.75244 1.90724 1.70624 1.32522 1.49703 1.22374 0.91427 0.91572 1.05052 1.64551 1.09793 1.18953 1.30711 1.22893 0.86735 0.98493 1.00118 1.22711 0.99040 0.97249 0.96939 1.19648 0.89273 0.82533 0.88994 1.86179 1.50387 1.25714 1.77581 1.21817 1.20680 1.24635 0.93094 0.93211 1.25690 0.94381 0.94818 1.02121 1.69816 1.23230 1.26522 1.35298 0.85605 0.77689 0.78119 0.80151 1.19434 1.20398 1.20276 1.22915 0.99275 0.95385 0.88008 1.22377 0.98690 0.82612 0.98842 1.22072 0.80564 1.01801 0.98626 0.86717 0.88915 0.87425 0.91349 0.84597 0.89255 0.89166 0.85173 0.90197 0.91996 0.90094 0.93305 0.93316 0.78192 0.92154 0.92166 0.94197 0.89229 0.86831 0.91229 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.42 71.24 0.67 -0.62 16 2 C 0.51 8.64 7.80 87.66 0.68 9.33 16 3 O -0.60 -15.67 16.52 -3.02 -0.05 -15.72 16 4 N -0.61 -9.31 2.95 -817.19 -2.41 -11.72 16 5 C 0.10 1.15 6.43 86.41 0.56 1.71 16 6 C 0.09 1.53 6.59 86.41 0.57 2.10 16 7 N -0.62 -12.43 2.94 -817.16 -2.40 -14.83 16 8 C 0.51 15.10 7.32 87.65 0.64 15.74 16 9 O -0.56 -22.29 13.82 -3.04 -0.04 -22.34 16 10 C 0.03 0.72 3.72 85.55 0.32 1.04 16 11 N -0.52 -19.99 5.09 -887.58 -4.52 -24.51 16 12 C 0.04 1.63 6.70 86.44 0.58 2.21 16 13 C -0.12 -5.61 5.26 31.47 0.17 -5.44 16 14 C 0.24 12.33 0.95 -10.33 -0.01 12.32 16 15 O -0.59 -33.71 13.10 -148.98 -1.95 -35.66 16 16 C -0.56 -31.41 8.14 25.60 0.21 -31.20 16 17 H 0.05 2.77 7.78 -2.91 -0.02 2.75 16 18 C 0.03 1.66 5.28 84.66 0.45 2.11 16 19 N -0.91 -49.66 11.00 21.45 0.24 -49.43 16 20 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 C 0.07 3.33 4.76 86.65 0.41 3.74 16 25 C 0.10 1.37 6.53 86.57 0.57 1.93 16 26 C 0.09 1.47 6.60 86.57 0.57 2.04 16 27 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.11 0.32 6.26 -2.39 -0.01 0.30 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.14 0.65 5.48 -2.39 -0.01 0.63 16 32 H 0.09 1.85 6.99 -2.38 -0.02 1.83 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.13 2.71 8.13 -2.39 -0.02 2.69 16 35 H 0.08 1.84 7.20 -2.39 -0.02 1.82 16 36 H 0.06 1.85 7.70 -2.39 -0.02 1.83 16 37 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.05 2.34 7.84 -2.38 -0.02 2.32 16 39 H 0.05 2.40 7.99 -2.39 -0.02 2.38 16 40 H 0.37 21.08 7.46 -74.06 -0.55 20.53 16 41 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 42 H 0.06 3.14 6.52 -2.39 -0.02 3.12 16 43 H 0.04 1.77 7.90 -2.39 -0.02 1.75 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.11 1.27 5.86 -2.38 -0.01 1.26 16 46 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.10 1.71 7.01 -2.39 -0.02 1.69 16 Total: -1.00 -77.71 367.18 -2.29 -80.00 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.44 Total: 32.37 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.38 Total: 17.01 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -9.09 Total: -100.49 kcal Atomic # 8 Polarization: -71.67 SS G_CDS: -2.04 Total: -73.71 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -77.71 -2.29 -80.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647233519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.330 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds