Wall clock time and date at job start Fri Apr 10 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47410 * 2 1 4 4 N 1.46901 * 109.46800 * 119.99635 * 2 1 3 5 5 C 1.46902 * 110.99943 * 274.99911 * 4 2 1 6 6 C 1.50697 * 109.47153 * 179.97438 * 5 4 2 7 7 C 1.38289 * 119.92635 * 89.99867 * 6 5 4 8 8 C 1.38100 * 120.07703 * 179.97438 * 7 6 5 9 9 C 1.38913 * 119.92613 * 359.97438 * 8 7 6 10 10 N 1.39673 * 120.07616 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.46506 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47289 * 89.99927 * 12 10 9 14 14 H 1.07994 * 119.99399 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 10 16 16 N 1.31518 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46762 * 60.00562 * 17 15 13 19 19 H 1.48506 * 109.46725 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00217 * 17 15 13 21 21 C 1.38912 * 119.84952 * 0.25994 * 9 8 7 22 22 C 1.38107 * 119.92242 * 359.48694 * 21 9 8 23 23 C 1.50699 * 109.47264 * 239.99308 * 2 1 3 24 24 C 1.38669 * 120.41875 * 99.72309 * 23 2 1 25 25 C 1.38624 * 118.42321 * 179.78051 * 24 23 2 26 26 C 1.38225 * 119.15759 * 0.52295 * 25 24 23 27 27 N 1.31855 * 120.76504 * 359.71533 * 26 25 24 28 28 C 1.31879 * 121.72498 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46654 * 60.00368 * 1 2 3 30 30 H 1.08994 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47346 * 300.00858 * 1 2 3 32 32 H 1.00903 * 111.00465 * 151.04491 * 4 2 1 33 33 H 1.09003 * 109.47406 * 60.00150 * 5 4 2 34 34 H 1.08995 * 109.47297 * 299.99986 * 5 4 2 35 35 H 1.07999 * 119.95876 * 359.95851 * 7 6 5 36 36 H 1.07996 * 120.04085 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46923 * 270.00426 * 11 10 9 38 38 H 1.08997 * 109.46694 * 29.99558 * 11 10 9 39 39 H 1.08995 * 109.47258 * 149.99834 * 11 10 9 40 40 H 1.09001 * 109.47060 * 210.00378 * 12 10 9 41 41 H 1.09004 * 109.47073 * 329.99866 * 12 10 9 42 42 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.03937 * 179.72354 * 21 9 8 44 44 H 1.08005 * 119.96225 * 180.25637 * 22 21 9 45 45 H 1.08005 * 120.78881 * 0.02651 * 24 23 2 46 46 H 1.07997 * 120.42308 * 180.22012 * 25 24 23 47 47 H 1.08006 * 119.61606 * 179.74647 * 26 25 24 48 48 H 1.07997 * 119.61580 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5871 -0.5216 3.5561 7 6 3.9441 -0.5734 3.8176 8 6 4.4101 -1.2541 4.9251 9 6 3.5139 -1.8869 5.7773 10 7 3.9818 -2.5768 6.8980 11 6 5.4190 -2.6332 7.1763 12 6 3.0352 -3.2440 7.7954 13 6 2.8139 -4.6599 7.3292 14 1 3.3273 -5.0262 6.4526 15 6 1.9568 -5.4879 8.0226 16 7 1.3320 -5.0419 9.0905 17 14 1.6819 -7.2428 7.4444 18 1 2.9737 -7.9750 7.4537 19 1 0.7225 -7.9190 8.3542 20 1 1.1304 -7.2290 6.0658 21 6 2.1519 -1.8371 5.5091 22 6 1.6923 -1.1501 4.4026 23 6 2.0324 -0.7105 -1.2304 24 6 2.4568 0.0127 -2.3347 25 6 2.9153 -0.6829 -3.4426 26 6 2.9238 -2.0649 -3.4140 27 7 2.5079 -2.7200 -2.3480 28 6 2.0701 -2.0911 -1.2746 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.9172 -1.1205 1.0289 33 1 1.0870 0.6165 2.5525 34 1 2.7588 1.0463 2.1182 35 1 4.6403 -0.0810 3.1547 36 1 5.4699 -1.2945 5.1285 37 1 5.8501 -3.5057 6.6855 38 1 5.8979 -1.7301 6.7981 39 1 5.5782 -2.7056 8.2521 40 1 3.4393 -3.2537 8.8077 41 1 2.0869 -2.7066 7.7879 42 1 0.7287 -5.6243 9.5781 43 1 1.4528 -2.3317 6.1671 44 1 0.6331 -1.1074 4.1957 45 1 2.4345 1.0925 -2.3303 46 1 3.2569 -0.1521 -4.3189 47 1 3.2756 -2.6144 -4.2747 48 1 1.7379 -2.6618 -0.4200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025365380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:20 Heat of formation + Delta-G solvation = 67.241714 kcal Electronic energy + Delta-G solvation = -26217.615010 eV Core-core repulsion = 22658.133772 eV Total energy + Delta-G solvation = -3559.481238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53049 -39.05448 -37.20071 -35.58555 -33.04254 -32.60818 -31.93489 -30.44178 -29.93225 -28.73328 -27.79387 -25.82689 -24.46733 -23.97519 -23.42132 -22.05231 -21.52275 -20.83110 -19.58996 -17.47854 -16.75083 -16.67391 -16.48388 -16.08863 -15.31854 -14.83450 -14.66798 -14.59843 -14.32873 -14.20964 -13.75589 -13.66585 -13.41492 -13.32512 -13.09244 -12.89220 -12.71584 -12.40801 -12.17909 -12.09653 -11.85206 -11.62118 -11.46046 -11.28624 -11.22702 -10.93393 -10.69537 -10.65877 -10.24272 -10.06257 -9.91343 -9.74900 -9.62630 -9.22746 -8.85710 -8.49115 -8.47428 -8.26326 -6.46666 -6.00861 -4.15779 0.85057 1.01910 2.11480 2.20617 3.30604 3.34562 3.38676 3.57093 4.02338 4.15699 4.19007 4.43062 4.50639 4.55632 4.63808 4.74451 4.82019 5.05756 5.11383 5.22948 5.26419 5.26682 5.34230 5.51753 5.54275 5.57745 5.63190 5.70311 5.77581 5.81419 5.83129 5.98515 6.01238 6.10797 6.12537 6.29209 6.38289 6.43313 6.46514 6.63568 6.89081 6.97774 7.04143 7.17281 7.26577 7.33270 7.38293 7.60394 7.77939 7.82484 8.16636 8.26757 8.48244 8.92790 9.51065 10.97145 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.002566 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.642061 B =10907.814008 C =11779.569910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.128 3.872 3 H 0.051 0.949 4 N -0.678 5.678 5 C 0.117 3.883 6 C -0.174 4.174 7 C -0.068 4.068 8 C -0.222 4.222 9 C 0.243 3.757 10 N -0.616 5.616 11 C 0.100 3.900 12 C 0.249 3.751 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.188 4.188 22 C -0.049 4.049 23 C -0.140 4.140 24 C -0.072 4.072 25 C -0.176 4.176 26 C 0.093 3.907 27 N -0.484 5.484 28 C 0.119 3.881 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.344 0.656 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.153 0.847 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 13.514 -20.114 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.018 3.982 3 H 0.069 0.931 4 N -0.310 5.310 5 C -0.011 4.011 6 C -0.177 4.177 7 C -0.087 4.087 8 C -0.245 4.245 9 C 0.135 3.865 10 N -0.321 5.321 11 C -0.044 4.044 12 C 0.130 3.870 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.211 4.211 22 C -0.069 4.069 23 C -0.143 4.143 24 C -0.099 4.099 25 C -0.196 4.196 26 C -0.064 4.064 27 N -0.192 5.192 28 C -0.038 4.038 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.149 0.851 44 H 0.130 0.870 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.171 0.829 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.099 12.170 -19.579 23.149 hybrid contribution 0.676 0.342 -0.500 0.908 sum 2.775 12.512 -20.080 23.821 Atomic orbital electron populations 1.21795 0.93347 1.02923 1.01319 1.20381 0.96247 0.95003 0.86595 0.93107 1.60703 1.33924 1.33188 1.03189 1.20697 1.00034 0.92112 0.88238 1.19137 0.93258 1.06847 0.98479 1.20495 0.94353 0.97788 0.96069 1.20511 0.98458 1.07032 0.98521 1.17956 0.92716 0.89107 0.86673 1.47107 1.05944 1.53892 1.25163 1.21457 0.82267 0.99945 1.00725 1.19301 0.87946 0.91687 0.88103 1.21531 1.26280 0.96876 1.12297 0.92320 1.24955 0.95481 0.98791 0.94810 1.69920 1.29003 1.36664 1.17909 0.86580 0.78044 0.84224 0.78782 1.20257 1.21201 1.19990 1.20907 0.94369 1.05191 1.00585 1.20635 0.98498 0.94684 0.93061 1.21032 1.00837 0.95704 0.96695 1.21484 0.95427 1.00401 0.92577 1.22104 1.02071 0.95942 0.99483 1.22820 0.95473 0.91769 0.96333 1.67791 1.09855 1.41248 1.00322 1.22853 0.93577 0.91479 0.95855 0.92834 0.91586 0.91957 0.83720 0.90801 0.95362 0.87848 0.86990 0.94090 0.92859 0.92052 0.95234 0.94632 0.92601 0.85051 0.86992 0.85076 0.84923 0.82946 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.40 37.16 0.35 -0.85 16 2 C 0.13 1.17 2.84 -68.86 -0.20 0.97 16 3 H 0.05 0.43 7.69 -51.93 -0.40 0.03 16 4 N -0.68 -7.51 5.70 -109.22 -0.62 -8.13 16 5 C 0.12 1.37 5.61 -4.98 -0.03 1.34 16 6 C -0.17 -2.59 5.40 -104.59 -0.56 -3.16 16 7 C -0.07 -1.02 9.69 -39.61 -0.38 -1.41 16 8 C -0.22 -3.82 9.21 -39.38 -0.36 -4.19 16 9 C 0.24 4.89 6.55 -83.79 -0.55 4.34 16 10 N -0.62 -13.20 2.99 -181.00 -0.54 -13.74 16 11 C 0.10 1.76 10.23 59.85 0.61 2.38 16 12 C 0.25 6.26 4.95 -5.19 -0.03 6.24 16 13 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 17 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 C -0.19 -3.79 9.20 -39.38 -0.36 -4.15 16 22 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 23 C -0.14 -1.33 4.72 -104.48 -0.49 -1.82 16 24 C -0.07 -0.58 9.82 -39.28 -0.39 -0.96 16 25 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16 26 C 0.09 0.85 11.18 -17.55 -0.20 0.65 16 27 N -0.48 -5.74 10.36 -13.25 -0.14 -5.88 16 28 C 0.12 1.34 10.19 -17.55 -0.18 1.16 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 32 H 0.34 3.98 7.99 -39.29 -0.31 3.66 16 33 H 0.07 0.83 7.38 -51.93 -0.38 0.45 16 34 H 0.03 0.30 8.00 -51.93 -0.42 -0.11 16 35 H 0.10 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.79 6.20 -51.93 -0.32 0.47 16 39 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 40 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 41 H 0.04 0.94 6.21 -51.93 -0.32 0.62 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.13 2.94 6.15 -52.49 -0.32 2.61 16 44 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 45 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 48 H 0.17 1.90 7.72 -52.49 -0.41 1.50 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -30.06 394.38 -10.95 -41.01 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.34 Total: 5.02 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -3.97 Total: -15.71 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.56 Total: -52.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.06 -10.95 -41.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025365380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.250 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds